Coexpression cluster: Cluster_251 (Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 18.18% (10/55) 3.0 0.0 0.000119
GO:0052890 oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor 3.64% (2/55) 8.3 1.5e-05 0.0011
GO:0003995 acyl-CoA dehydrogenase activity 3.64% (2/55) 8.3 1.5e-05 0.0011
GO:0034660 ncRNA metabolic process 9.09% (5/55) 3.86 2.4e-05 0.001449
GO:0090304 nucleic acid metabolic process 18.18% (10/55) 2.46 1.1e-05 0.001686
GO:0034470 ncRNA processing 7.27% (4/55) 4.14 8.1e-05 0.003431
GO:0006139 nucleobase-containing compound metabolic process 18.18% (10/55) 2.14 7.6e-05 0.003758
GO:0006364 rRNA processing 5.45% (3/55) 4.63 0.000246 0.00521
GO:1901360 organic cyclic compound metabolic process 18.18% (10/55) 1.94 0.000237 0.00539
GO:0006396 RNA processing 9.09% (5/55) 3.12 0.000277 0.005461
GO:0006725 cellular aromatic compound metabolic process 18.18% (10/55) 1.96 0.000207 0.005575
GO:0034641 cellular nitrogen compound metabolic process 20.0% (11/55) 1.86 0.000174 0.005729
GO:0046483 heterocycle metabolic process 18.18% (10/55) 2.01 0.000157 0.005821
GO:0005488 binding 56.36% (31/55) 0.79 0.000237 0.005835
GO:0016072 rRNA metabolic process 5.45% (3/55) 4.51 0.00032 0.005912
GO:0097159 organic cyclic compound binding 40.0% (22/55) 1.09 0.000201 0.00594
GO:0003674 molecular_function 74.55% (41/55) 0.54 0.00035 0.006097
GO:0032774 RNA biosynthetic process 7.27% (4/55) 3.53 0.000407 0.006696
GO:0017056 structural constituent of nuclear pore 3.64% (2/55) 5.97 0.000463 0.007216
GO:0009059 macromolecule biosynthetic process 10.91% (6/55) 2.48 0.000712 0.010537
GO:0006351 DNA-templated transcription 5.45% (3/55) 3.7 0.001614 0.020778
GO:0062105 RNA 2'-O-methyltransferase activity 1.82% (1/55) 9.3 0.00159 0.021397
GO:0106050 tRNA 2'-O-methyltransferase activity 1.82% (1/55) 9.3 0.00159 0.021397
GO:0044237 cellular metabolic process 29.09% (16/55) 1.11 0.001924 0.023727
GO:0048586 regulation of long-day photoperiodism, flowering 1.82% (1/55) 8.3 0.003178 0.025425
GO:0044770 cell cycle phase transition 1.82% (1/55) 8.3 0.003178 0.025425
GO:0044772 mitotic cell cycle phase transition 1.82% (1/55) 8.3 0.003178 0.025425
GO:0044843 cell cycle G1/S phase transition 1.82% (1/55) 8.3 0.003178 0.025425
GO:0000082 G1/S transition of mitotic cell cycle 1.82% (1/55) 8.3 0.003178 0.025425
GO:0048578 positive regulation of long-day photoperiodism, flowering 1.82% (1/55) 8.3 0.003178 0.025425
GO:2000243 positive regulation of reproductive process 1.82% (1/55) 8.3 0.003178 0.025425
GO:0001055 RNA polymerase II activity 1.82% (1/55) 8.3 0.003178 0.025425
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 3.64% (2/55) 4.54 0.00337 0.026251
GO:0008194 UDP-glycosyltransferase activity 7.27% (4/55) 2.84 0.002366 0.026942
GO:0009987 cellular process 38.18% (21/55) 0.88 0.00229 0.027112
GO:0034654 nucleobase-containing compound biosynthetic process 7.27% (4/55) 2.8 0.002618 0.02768
GO:0140098 catalytic activity, acting on RNA 7.27% (4/55) 2.81 0.002541 0.027857
GO:0003676 nucleic acid binding 20.0% (11/55) 1.36 0.003046 0.031095
GO:0006426 glycyl-tRNA aminoacylation 1.82% (1/55) 7.71 0.004764 0.031334
GO:0008180 COP9 signalosome 1.82% (1/55) 7.71 0.004764 0.031334
GO:0004820 glycine-tRNA ligase activity 1.82% (1/55) 7.71 0.004764 0.031334
GO:0097747 RNA polymerase activity 3.64% (2/55) 4.32 0.004557 0.032903
GO:0034062 5'-3' RNA polymerase activity 3.64% (2/55) 4.32 0.004557 0.032903
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 3.64% (2/55) 4.3 0.0047 0.033122
GO:0051082 unfolded protein binding 3.64% (2/55) 4.34 0.004417 0.033526
GO:0019438 aromatic compound biosynthetic process 7.27% (4/55) 2.47 0.005896 0.037942
GO:0005665 RNA polymerase II, core complex 1.82% (1/55) 7.3 0.006346 0.038338
GO:0048582 positive regulation of post-embryonic development 1.82% (1/55) 7.3 0.006346 0.038338
GO:0018130 heterocycle biosynthetic process 7.27% (4/55) 2.45 0.006219 0.039166
GO:0017111 ribonucleoside triphosphate phosphatase activity 7.27% (4/55) 2.4 0.007 0.040626
GO:1901363 heterocyclic compound binding 21.82% (12/55) 1.13 0.006991 0.041386
GO:0036094 small molecule binding 21.82% (12/55) 1.12 0.007447 0.042392
GO:1901362 organic cyclic compound biosynthetic process 7.27% (4/55) 2.34 0.008064 0.042624
GO:0051287 NAD binding 3.64% (2/55) 3.9 0.007963 0.042858
GO:0043170 macromolecule metabolic process 25.45% (14/55) 0.99 0.007948 0.043567
GO:2000028 regulation of photoperiodism, flowering 1.82% (1/55) 6.97 0.007927 0.044271
GO:0016462 pyrophosphatase activity 7.27% (4/55) 2.31 0.008634 0.044836
GO:0071704 organic substance metabolic process 32.73% (18/55) 0.81 0.009033 0.046101
GO:0016817 hydrolase activity, acting on acid anhydrides 7.27% (4/55) 2.28 0.009352 0.046136
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 7.27% (4/55) 2.28 0.00923 0.046305
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (55) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms