Coexpression cluster: Cluster_63 (Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003735 structural constituent of ribosome 26.32% (25/95) 4.68 0.0 0.0
GO:0009059 macromolecule biosynthetic process 31.58% (30/95) 4.01 0.0 0.0
GO:0043043 peptide biosynthetic process 26.32% (25/95) 4.65 0.0 0.0
GO:0005198 structural molecule activity 27.37% (26/95) 4.54 0.0 0.0
GO:0006412 translation 26.32% (25/95) 4.69 0.0 0.0
GO:0006518 peptide metabolic process 26.32% (25/95) 4.57 0.0 0.0
GO:0043604 amide biosynthetic process 26.32% (25/95) 4.56 0.0 0.0
GO:0043603 amide metabolic process 26.32% (25/95) 4.41 0.0 0.0
GO:0005840 ribosome 24.21% (23/95) 4.68 0.0 0.0
GO:0009058 biosynthetic process 36.84% (35/95) 3.06 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 24.21% (23/95) 4.29 0.0 0.0
GO:0043228 non-membrane-bounded organelle 24.21% (23/95) 4.29 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 28.42% (27/95) 3.76 0.0 0.0
GO:0044249 cellular biosynthetic process 34.74% (33/95) 3.2 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 29.47% (28/95) 3.61 0.0 0.0
GO:1901576 organic substance biosynthetic process 34.74% (33/95) 3.1 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 36.84% (35/95) 2.74 0.0 0.0
GO:0043226 organelle 26.32% (25/95) 3.25 0.0 0.0
GO:0043229 intracellular organelle 26.32% (25/95) 3.25 0.0 0.0
GO:0005575 cellular_component 40.0% (38/95) 1.94 0.0 0.0
GO:0043170 macromolecule metabolic process 43.16% (41/95) 1.76 0.0 0.0
GO:0044237 cellular metabolic process 44.21% (42/95) 1.71 0.0 0.0
GO:0009987 cellular process 54.74% (52/95) 1.4 0.0 0.0
GO:0006807 nitrogen compound metabolic process 43.16% (41/95) 1.59 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 36.84% (35/95) 1.73 0.0 0.0
GO:0110165 cellular anatomical entity 30.53% (29/95) 2.0 0.0 0.0
GO:0071704 organic substance metabolic process 47.37% (45/95) 1.34 0.0 0.0
GO:0008152 metabolic process 48.42% (46/95) 1.29 0.0 0.0
GO:0019538 protein metabolic process 30.53% (29/95) 1.75 0.0 0.0
GO:0044238 primary metabolic process 43.16% (41/95) 1.32 0.0 0.0
GO:0008150 biological_process 62.11% (59/95) 0.86 0.0 0.0
GO:0006414 translational elongation 4.21% (4/95) 5.38 3e-06 3.5e-05
GO:0003676 nucleic acid binding 23.16% (22/95) 1.57 3e-06 3.8e-05
GO:0003674 molecular_function 71.58% (68/95) 0.48 4.3e-05 0.000535
GO:0140640 catalytic activity, acting on a nucleic acid 9.47% (9/95) 2.4 5.3e-05 0.000644
GO:0140098 catalytic activity, acting on RNA 7.37% (7/95) 2.83 6.1e-05 0.000714
GO:0003746 translation elongation factor activity 3.16% (3/95) 5.23 7e-05 0.000796
GO:0015935 small ribosomal subunit 3.16% (3/95) 5.19 7.7e-05 0.000838
GO:0044391 ribosomal subunit 4.21% (4/95) 4.17 7.6e-05 0.000841
GO:0003723 RNA binding 9.47% (9/95) 2.12 0.000235 0.002483
GO:0034660 ncRNA metabolic process 5.26% (5/95) 3.08 0.000333 0.003437
GO:0008186 ATP-dependent activity, acting on RNA 3.16% (3/95) 4.42 0.00038 0.003738
GO:0003724 RNA helicase activity 3.16% (3/95) 4.42 0.00038 0.003738
GO:0032991 protein-containing complex 11.58% (11/95) 1.75 0.00042 0.004035
GO:0004812 aminoacyl-tRNA ligase activity 3.16% (3/95) 4.03 0.000847 0.007311
GO:0006418 tRNA aminoacylation for protein translation 3.16% (3/95) 4.03 0.000847 0.007311
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.16% (3/95) 4.03 0.000847 0.007311
GO:0043038 amino acid activation 3.16% (3/95) 4.03 0.000847 0.007311
GO:0043039 tRNA aminoacylation 3.16% (3/95) 4.03 0.000847 0.007311
GO:0072655 establishment of protein localization to mitochondrion 2.11% (2/95) 5.26 0.001238 0.010272
GO:0070585 protein localization to mitochondrion 2.11% (2/95) 5.26 0.001238 0.010272
GO:0006520 amino acid metabolic process 5.26% (5/95) 2.63 0.001353 0.011003
GO:0016070 RNA metabolic process 8.42% (8/95) 1.89 0.001469 0.011726
GO:0004386 helicase activity 4.21% (4/95) 3.02 0.001531 0.011994
GO:1990904 ribonucleoprotein complex 4.21% (4/95) 2.97 0.001761 0.013547
GO:0008135 translation factor activity, RNA binding 3.16% (3/95) 3.62 0.001922 0.014263
GO:0090079 translation regulator activity, nucleic acid binding 3.16% (3/95) 3.62 0.001922 0.014263
GO:0045182 translation regulator activity 3.16% (3/95) 3.54 0.002246 0.016382
GO:0140101 catalytic activity, acting on a tRNA 3.16% (3/95) 3.43 0.002754 0.018493
GO:0090730 Las1 complex 1.05% (1/95) 8.51 0.002747 0.018741
GO:0032422 purine-rich negative regulatory element binding 1.05% (1/95) 8.51 0.002747 0.018741
GO:0070204 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity 1.05% (1/95) 8.51 0.002747 0.018741
GO:0035266 meristem growth 1.05% (1/95) 8.51 0.002747 0.018741
GO:0097159 organic cyclic compound binding 30.53% (29/95) 0.7 0.003782 0.024995
GO:0090304 nucleic acid metabolic process 9.47% (9/95) 1.52 0.00425 0.027658
GO:0009234 menaquinone biosynthetic process 1.05% (1/95) 7.51 0.005486 0.031791
GO:0047623 adenosine-phosphate deaminase activity 1.05% (1/95) 7.51 0.005486 0.031791
GO:0106380 purine ribonucleotide salvage 1.05% (1/95) 7.51 0.005486 0.031791
GO:0009233 menaquinone metabolic process 1.05% (1/95) 7.51 0.005486 0.031791
GO:0048589 developmental growth 1.05% (1/95) 7.51 0.005486 0.031791
GO:0032264 IMP salvage 1.05% (1/95) 7.51 0.005486 0.031791
GO:0032261 purine nucleotide salvage 1.05% (1/95) 7.51 0.005486 0.031791
GO:0003876 AMP deaminase activity 1.05% (1/95) 7.51 0.005486 0.031791
GO:0006399 tRNA metabolic process 3.16% (3/95) 3.06 0.005704 0.032605
GO:0006839 mitochondrial transport 2.11% (2/95) 4.12 0.005985 0.033312
GO:0006139 nucleobase-containing compound metabolic process 10.53% (10/95) 1.35 0.005951 0.033564
GO:0098800 inner mitochondrial membrane protein complex 2.11% (2/95) 3.95 0.007448 0.040914
GO:0106035 protein maturation by [4Fe-4S] cluster transfer 1.05% (1/95) 6.92 0.008218 0.041386
GO:0031965 nuclear membrane 1.05% (1/95) 6.92 0.008218 0.041386
GO:0006429 leucyl-tRNA aminoacylation 1.05% (1/95) 6.92 0.008218 0.041386
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex 1.05% (1/95) 6.92 0.008218 0.041386
GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity 1.05% (1/95) 6.92 0.008218 0.041386
GO:0010073 meristem maintenance 1.05% (1/95) 6.92 0.008218 0.041386
GO:0004823 leucine-tRNA ligase activity 1.05% (1/95) 6.92 0.008218 0.041386
GO:0044281 small molecule metabolic process 7.37% (7/95) 1.6 0.008652 0.043057
GO:0004826 phenylalanine-tRNA ligase activity 1.05% (1/95) 6.51 0.010943 0.049773
GO:0043173 nucleotide salvage 1.05% (1/95) 6.51 0.010943 0.049773
GO:0040007 growth 1.05% (1/95) 6.51 0.010943 0.049773
GO:0006432 phenylalanyl-tRNA aminoacylation 1.05% (1/95) 6.51 0.010943 0.049773
GO:0006434 seryl-tRNA aminoacylation 1.05% (1/95) 6.51 0.010943 0.049773
GO:0004828 serine-tRNA ligase activity 1.05% (1/95) 6.51 0.010943 0.049773
GO:0005854 nascent polypeptide-associated complex 1.05% (1/95) 6.51 0.010943 0.049773
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (95) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms