Coexpression cluster: Cluster_217 (Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003723 RNA binding 17.91% (12/67) 3.04 0.0 5e-06
GO:0042254 ribosome biogenesis 5.97% (4/67) 6.62 0.0 1e-05
GO:0022613 ribonucleoprotein complex biogenesis 5.97% (4/67) 6.26 0.0 1.8e-05
GO:0016072 rRNA metabolic process 7.46% (5/67) 4.96 1e-06 3.8e-05
GO:0005730 nucleolus 4.48% (3/67) 6.9 2e-06 0.0001
GO:0016070 RNA metabolic process 14.93% (10/67) 2.72 3e-06 0.000113
GO:0034660 ncRNA metabolic process 8.96% (6/67) 3.84 4e-06 0.000146
GO:0006396 RNA processing 10.45% (7/67) 3.32 7e-06 0.000209
GO:0034470 ncRNA processing 7.46% (5/67) 4.17 9e-06 0.00025
GO:0006364 rRNA processing 5.97% (4/67) 4.76 1.5e-05 0.000377
GO:0044085 cellular component biogenesis 5.97% (4/67) 4.64 2.1e-05 0.000486
GO:1990904 ribonucleoprotein complex 7.46% (5/67) 3.79 3.1e-05 0.000665
GO:0017111 ribonucleoside triphosphate phosphatase activity 10.45% (7/67) 2.92 3.9e-05 0.000756
GO:0003676 nucleic acid binding 23.88% (16/67) 1.62 4.3e-05 0.000775
GO:0090304 nucleic acid metabolic process 14.93% (10/67) 2.17 6.8e-05 0.000953
GO:0016462 pyrophosphatase activity 10.45% (7/67) 2.83 5.7e-05 0.000962
GO:0016817 hydrolase activity, acting on acid anhydrides 10.45% (7/67) 2.8 6.6e-05 0.000983
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 10.45% (7/67) 2.81 6.4e-05 0.001019
GO:0043229 intracellular organelle 13.43% (9/67) 2.28 9.1e-05 0.001153
GO:0043226 organelle 13.43% (9/67) 2.28 9.1e-05 0.001153
GO:0051082 unfolded protein binding 4.48% (3/67) 4.64 0.000242 0.002929
GO:0097159 organic cyclic compound binding 37.31% (25/67) 0.99 0.000278 0.003075
GO:0034641 cellular nitrogen compound metabolic process 17.91% (12/67) 1.7 0.000268 0.003096
GO:0009451 RNA modification 5.97% (4/67) 3.65 0.000303 0.003207
GO:0006139 nucleobase-containing compound metabolic process 14.93% (10/67) 1.85 0.000412 0.003879
GO:0031428 box C/D RNP complex 2.99% (2/67) 6.1 0.000382 0.003881
GO:0005575 cellular_component 25.37% (17/67) 1.28 0.000398 0.003884
GO:0140098 catalytic activity, acting on RNA 7.46% (5/67) 2.85 0.00066 0.005986
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 2.99% (2/67) 5.69 0.000687 0.006016
GO:0071840 cellular component organization or biogenesis 10.45% (7/67) 2.23 0.000715 0.006054
GO:0030515 snoRNA binding 2.99% (2/67) 5.62 0.000758 0.006212
GO:0032040 small-subunit processome 2.99% (2/67) 5.55 0.000833 0.006411
GO:0046483 heterocycle metabolic process 14.93% (10/67) 1.72 0.000817 0.006485
GO:0005634 nucleus 7.46% (5/67) 2.72 0.001001 0.007266
GO:0001522 pseudouridine synthesis 2.99% (2/67) 5.37 0.001078 0.007398
GO:0030684 preribosome 2.99% (2/67) 5.43 0.000993 0.007416
GO:0006725 cellular aromatic compound metabolic process 14.93% (10/67) 1.67 0.001058 0.007462
GO:1901360 organic cyclic compound metabolic process 14.93% (10/67) 1.65 0.001198 0.00801
GO:0022618 protein-RNA complex assembly 2.99% (2/67) 5.26 0.001258 0.008192
GO:0005488 binding 50.75% (34/67) 0.64 0.001557 0.009886
GO:0071826 protein-RNA complex organization 2.99% (2/67) 5.01 0.001766 0.010942
GO:0006457 protein folding 4.48% (3/67) 3.64 0.001823 0.011025
GO:0001510 RNA methylation 2.99% (2/67) 4.92 0.001993 0.011771
GO:0016887 ATP hydrolysis activity 5.97% (4/67) 2.81 0.002576 0.014869
GO:0009987 cellular process 35.82% (24/67) 0.79 0.003137 0.017709
GO:0065003 protein-containing complex assembly 4.48% (3/67) 3.35 0.003246 0.017921
GO:0035639 purine ribonucleoside triphosphate binding 17.91% (12/67) 1.25 0.003882 0.018603
GO:0045116 protein neddylation 1.49% (1/67) 8.01 0.003871 0.018908
GO:0019781 NEDD8 activating enzyme activity 1.49% (1/67) 8.01 0.003871 0.018908
GO:0004824 lysine-tRNA ligase activity 1.49% (1/67) 8.01 0.003871 0.018908
GO:0006430 lysyl-tRNA aminoacylation 1.49% (1/67) 8.01 0.003871 0.018908
GO:0043227 membrane-bounded organelle 7.46% (5/67) 2.29 0.003583 0.018962
GO:0043231 intracellular membrane-bounded organelle 7.46% (5/67) 2.29 0.003583 0.018962
GO:0003724 RNA helicase activity 2.99% (2/67) 4.34 0.004434 0.020111
GO:0015934 large ribosomal subunit 2.99% (2/67) 4.34 0.004434 0.020111
GO:0008186 ATP-dependent activity, acting on RNA 2.99% (2/67) 4.34 0.004434 0.020111
GO:0006913 nucleocytoplasmic transport 2.99% (2/67) 4.26 0.004958 0.022093
GO:0003924 GTPase activity 4.48% (3/67) 3.09 0.005364 0.023095
GO:0051169 nuclear transport 2.99% (2/67) 4.2 0.005322 0.023308
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 2.99% (2/67) 4.01 0.006898 0.029203
GO:0140640 catalytic activity, acting on a nucleic acid 7.46% (5/67) 2.06 0.007014 0.029206
GO:0006269 DNA replication, synthesis of RNA primer 1.49% (1/67) 7.01 0.007727 0.031154
GO:0003896 DNA primase activity 1.49% (1/67) 7.01 0.007727 0.031154
GO:0022607 cellular component assembly 4.48% (3/67) 2.88 0.007948 0.031545
GO:0005198 structural molecule activity 5.97% (4/67) 2.34 0.008156 0.031871
GO:0000027 ribosomal large subunit assembly 1.49% (1/67) 6.69 0.00965 0.035014
GO:0032561 guanyl ribonucleotide binding 4.48% (3/67) 2.8 0.009245 0.035047
GO:0005525 GTP binding 4.48% (3/67) 2.8 0.009245 0.035047
GO:0043228 non-membrane-bounded organelle 5.97% (4/67) 2.27 0.009604 0.035355
GO:0043232 intracellular non-membrane-bounded organelle 5.97% (4/67) 2.27 0.009604 0.035355
GO:0019001 guanyl nucleotide binding 4.48% (3/67) 2.76 0.009937 0.035548
GO:0044391 ribosomal subunit 2.99% (2/67) 3.67 0.010855 0.038295
GO:0043933 protein-containing complex organization 4.48% (3/67) 2.71 0.011029 0.038377
GO:0043414 macromolecule methylation 2.99% (2/67) 3.64 0.011373 0.039037
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.49% (1/67) 6.43 0.011569 0.039179
GO:0003674 molecular_function 65.67% (44/67) 0.36 0.012062 0.039788
GO:0032555 purine ribonucleotide binding 17.91% (12/67) 1.05 0.011913 0.039814
GO:0110165 cellular anatomical entity 16.42% (11/67) 1.1 0.012318 0.040114
GO:0008168 methyltransferase activity 4.48% (3/67) 2.64 0.012591 0.040483
GO:0032553 ribonucleotide binding 17.91% (12/67) 1.03 0.013075 0.041514
GO:0097367 carbohydrate derivative binding 17.91% (12/67) 1.02 0.013887 0.043546
GO:0000470 maturation of LSU-rRNA 1.49% (1/67) 6.01 0.015395 0.04547
GO:0003725 double-stranded RNA binding 1.49% (1/67) 6.01 0.015395 0.04547
GO:0008134 transcription factor binding 1.49% (1/67) 6.01 0.015395 0.04547
GO:0016741 transferase activity, transferring one-carbon groups 4.48% (3/67) 2.55 0.014713 0.045574
GO:0032259 methylation 2.99% (2/67) 3.41 0.015293 0.046801
GO:0017076 purine nucleotide binding 17.91% (12/67) 0.98 0.016902 0.049345
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (67) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms