Coexpression cluster: Cluster_4 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003735 structural constituent of ribosome 33.7% (61/181) 5.08 0.0 0.0
GO:0005840 ribosome 32.6% (59/181) 5.17 0.0 0.0
GO:0006412 translation 31.49% (57/181) 5.03 0.0 0.0
GO:0006518 peptide metabolic process 31.49% (57/181) 4.92 0.0 0.0
GO:0043226 organelle 33.7% (61/181) 3.63 0.0 0.0
GO:0043228 non-membrane-bounded organelle 33.15% (60/181) 4.8 0.0 0.0
GO:0043229 intracellular organelle 33.7% (61/181) 3.63 0.0 0.0
GO:0009059 macromolecule biosynthetic process 34.81% (63/181) 4.23 0.0 0.0
GO:0005198 structural molecule activity 34.25% (62/181) 4.9 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 33.15% (60/181) 4.8 0.0 0.0
GO:0043603 amide metabolic process 31.49% (57/181) 4.73 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 32.04% (58/181) 4.01 0.0 0.0
GO:0043043 peptide biosynthetic process 31.49% (57/181) 5.0 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 32.6% (59/181) 3.83 0.0 0.0
GO:0043604 amide biosynthetic process 31.49% (57/181) 4.88 0.0 0.0
GO:0044249 cellular biosynthetic process 35.36% (64/181) 3.3 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 39.78% (72/181) 2.97 0.0 0.0
GO:0005575 cellular_component 51.38% (93/181) 2.35 0.0 0.0
GO:1901576 organic substance biosynthetic process 35.36% (64/181) 3.17 0.0 0.0
GO:0009058 biosynthetic process 35.36% (64/181) 3.05 0.0 0.0
GO:0110165 cellular anatomical entity 40.88% (74/181) 2.44 0.0 0.0
GO:0043170 macromolecule metabolic process 45.3% (82/181) 1.95 0.0 0.0
GO:0044237 cellular metabolic process 43.65% (79/181) 1.83 0.0 0.0
GO:0019538 protein metabolic process 35.36% (64/181) 2.09 0.0 0.0
GO:0009987 cellular process 52.49% (95/181) 1.44 0.0 0.0
GO:0006807 nitrogen compound metabolic process 43.09% (78/181) 1.71 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 35.91% (65/181) 1.81 0.0 0.0
GO:0071704 organic substance metabolic process 45.86% (83/181) 1.4 0.0 0.0
GO:0044238 primary metabolic process 42.54% (77/181) 1.4 0.0 0.0
GO:0008152 metabolic process 45.86% (83/181) 1.3 0.0 0.0
GO:1990904 ribonucleoprotein complex 7.73% (14/181) 3.97 0.0 0.0
GO:0008150 biological_process 57.46% (104/181) 0.83 0.0 0.0
GO:0032991 protein-containing complex 15.47% (28/181) 2.26 0.0 0.0
GO:0044391 ribosomal subunit 4.42% (8/181) 4.35 0.0 0.0
GO:0006414 translational elongation 3.31% (6/181) 5.34 0.0 0.0
GO:0003723 RNA binding 9.39% (17/181) 2.14 0.0 5e-06
GO:0008097 5S rRNA binding 1.66% (3/181) 7.14 1e-06 8e-06
GO:0070013 intracellular organelle lumen 2.21% (4/181) 5.39 2e-06 2.7e-05
GO:0031974 membrane-enclosed lumen 2.21% (4/181) 5.39 2e-06 2.7e-05
GO:0043233 organelle lumen 2.21% (4/181) 5.39 2e-06 2.7e-05
GO:0005759 mitochondrial matrix 1.66% (3/181) 6.14 8e-06 9.5e-05
GO:0003674 molecular_function 64.64% (117/181) 0.4 1.6e-05 0.00018
GO:0019843 rRNA binding 2.21% (4/181) 4.7 1.6e-05 0.000181
GO:0015935 small ribosomal subunit 2.21% (4/181) 4.7 1.6e-05 0.000181
GO:0090079 translation regulator activity, nucleic acid binding 2.76% (5/181) 3.63 5.4e-05 0.00057
GO:0008135 translation factor activity, RNA binding 2.76% (5/181) 3.63 5.4e-05 0.00057
GO:0045182 translation regulator activity 2.76% (5/181) 3.52 7.8e-05 0.000803
GO:0015934 large ribosomal subunit 2.21% (4/181) 4.07 9.6e-05 0.000972
GO:0022625 cytosolic large ribosomal subunit 1.66% (3/181) 4.97 0.000113 0.001117
GO:0003676 nucleic acid binding 16.57% (30/181) 1.02 0.000159 0.001544
GO:0140318 protein transporter activity 1.1% (2/181) 6.24 0.000277 0.002486
GO:0008320 protein transmembrane transporter activity 1.1% (2/181) 6.24 0.000277 0.002486
GO:0022884 macromolecule transmembrane transporter activity 1.1% (2/181) 6.24 0.000277 0.002486
GO:0002182 cytoplasmic translational elongation 1.1% (2/181) 6.24 0.000277 0.002486
GO:0000178 exosome (RNase complex) 1.1% (2/181) 5.97 0.000414 0.003648
GO:1905354 exoribonuclease complex 1.1% (2/181) 5.75 0.000577 0.004827
GO:0005742 mitochondrial outer membrane translocase complex 1.1% (2/181) 5.75 0.000577 0.004827
GO:0098799 outer mitochondrial membrane protein complex 1.1% (2/181) 5.75 0.000577 0.004827
GO:0006396 RNA processing 4.42% (8/181) 2.1 0.000605 0.004976
GO:0090304 nucleic acid metabolic process 7.73% (14/181) 1.39 0.000996 0.008055
GO:0043248 proteasome assembly 1.1% (2/181) 5.24 0.001224 0.009575
GO:0005741 mitochondrial outer membrane 1.1% (2/181) 5.24 0.001224 0.009575
GO:0008380 RNA splicing 2.21% (4/181) 2.96 0.001806 0.013476
GO:0051983 regulation of chromosome segregation 1.1% (2/181) 4.97 0.001783 0.01351
GO:0003743 translation initiation factor activity 1.66% (3/181) 3.65 0.001767 0.013605
GO:0000387 spliceosomal snRNP assembly 1.1% (2/181) 4.86 0.002099 0.015198
GO:0016070 RNA metabolic process 6.08% (11/181) 1.49 0.002072 0.015224
GO:0006310 DNA recombination 1.66% (3/181) 3.5 0.002394 0.017077
GO:0030515 snoRNA binding 1.1% (2/181) 4.47 0.00361 0.025374
GO:0005852 eukaryotic translation initiation factor 3 complex 1.1% (2/181) 4.39 0.004047 0.028041
GO:0015035 protein-disulfide reductase activity 1.1% (2/181) 4.31 0.004508 0.030791
GO:0042254 ribosome biogenesis 1.1% (2/181) 4.24 0.004991 0.03362
GO:0000974 Prp19 complex 0.55% (1/181) 7.56 0.005303 0.033844
GO:0000408 EKC/KEOPS complex 0.55% (1/181) 7.56 0.005303 0.033844
GO:0001401 SAM complex 0.55% (1/181) 7.56 0.005303 0.033844
GO:0045900 negative regulation of translational elongation 0.55% (1/181) 7.56 0.005303 0.033844
GO:0003746 translation elongation factor activity 1.1% (2/181) 4.17 0.005497 0.034625
GO:0000175 3'-5'-RNA exonuclease activity 1.1% (2/181) 4.1 0.006026 0.036995
GO:0006302 double-strand break repair 1.1% (2/181) 4.1 0.006026 0.036995
GO:0000398 mRNA splicing, via spliceosome 1.66% (3/181) 2.97 0.006692 0.039578
GO:0005525 GTP binding 2.76% (5/181) 2.09 0.006642 0.039771
GO:0032561 guanyl ribonucleotide binding 2.76% (5/181) 2.09 0.006642 0.039771
GO:0019001 guanyl nucleotide binding 2.76% (5/181) 2.07 0.00715 0.041781
GO:0065003 protein-containing complex assembly 2.21% (4/181) 2.39 0.007392 0.04268
GO:0005839 proteasome core complex 1.1% (2/181) 3.92 0.007745 0.043677
GO:0005681 spliceosomal complex 1.1% (2/181) 3.92 0.007745 0.043677
GO:0046483 heterocycle metabolic process 8.29% (15/181) 1.01 0.00808 0.045044
GO:0022613 ribonucleoprotein complex biogenesis 1.1% (2/181) 3.86 0.008361 0.046081
GO:0006139 nucleobase-containing compound metabolic process 7.73% (14/181) 1.04 0.008556 0.046624
GO:0016896 RNA exonuclease activity, producing 5'-phosphomonoesters 1.1% (2/181) 3.8 0.008999 0.047439
GO:0022618 protein-RNA complex assembly 1.1% (2/181) 3.8 0.008999 0.047439
GO:0004532 RNA exonuclease activity 1.1% (2/181) 3.8 0.008999 0.047439
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 1.66% (3/181) 2.8 0.009247 0.048223
GO:0006605 protein targeting 1.1% (2/181) 3.75 0.009657 0.049304
GO:0031968 organelle outer membrane 1.1% (2/181) 3.75 0.009657 0.049304
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (181) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms