Coexpression cluster: Cluster_106 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0090304 nucleic acid metabolic process 26.85% (40/149) 3.19 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 27.52% (41/149) 2.88 0.0 0.0
GO:0046483 heterocycle metabolic process 27.52% (41/149) 2.74 0.0 0.0
GO:0016070 RNA metabolic process 21.48% (32/149) 3.31 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 27.52% (41/149) 2.71 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 27.52% (41/149) 2.67 0.0 0.0
GO:0140640 catalytic activity, acting on a nucleic acid 17.45% (26/149) 3.44 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 27.52% (41/149) 2.44 0.0 0.0
GO:0034660 ncRNA metabolic process 12.08% (18/149) 4.32 0.0 0.0
GO:0043170 macromolecule metabolic process 38.93% (58/149) 1.74 0.0 0.0
GO:0006807 nitrogen compound metabolic process 39.6% (59/149) 1.59 0.0 0.0
GO:0006396 RNA processing 12.75% (19/149) 3.63 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 11.41% (17/149) 3.43 0.0 0.0
GO:0005488 binding 59.73% (89/149) 0.93 0.0 0.0
GO:0044238 primary metabolic process 40.27% (60/149) 1.32 0.0 0.0
GO:0006399 tRNA metabolic process 7.38% (11/149) 4.32 0.0 0.0
GO:0034470 ncRNA processing 7.38% (11/149) 4.17 0.0 0.0
GO:0071704 organic substance metabolic process 40.27% (60/149) 1.21 0.0 0.0
GO:0016874 ligase activity 7.38% (11/149) 3.92 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 6.04% (9/149) 4.41 0.0 0.0
GO:0008152 metabolic process 40.27% (60/149) 1.12 0.0 0.0
GO:0003674 molecular_function 73.15% (109/149) 0.58 0.0 0.0
GO:0009987 cellular process 40.27% (60/149) 1.05 0.0 0.0
GO:0044237 cellular metabolic process 30.2% (45/149) 1.3 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 4.7% (7/149) 4.67 0.0 0.0
GO:0043038 amino acid activation 4.7% (7/149) 4.67 0.0 0.0
GO:0043039 tRNA aminoacylation 4.7% (7/149) 4.67 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 4.7% (7/149) 4.67 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 4.7% (7/149) 4.67 0.0 0.0
GO:0008150 biological_process 53.69% (80/149) 0.73 0.0 1e-06
GO:0016072 rRNA metabolic process 4.7% (7/149) 4.32 0.0 1e-06
GO:0140097 catalytic activity, acting on DNA 5.37% (8/149) 3.65 0.0 5e-06
GO:0032991 protein-containing complex 12.75% (19/149) 1.98 0.0 6e-06
GO:0003676 nucleic acid binding 21.48% (32/149) 1.39 0.0 6e-06
GO:0005575 cellular_component 24.16% (36/149) 1.26 1e-06 9e-06
GO:0004386 helicase activity 4.7% (7/149) 3.78 1e-06 1.4e-05
GO:0006364 rRNA processing 4.03% (6/149) 4.2 1e-06 1.5e-05
GO:0140657 ATP-dependent activity 8.05% (12/149) 2.51 2e-06 2.4e-05
GO:0022613 ribonucleoprotein complex biogenesis 2.68% (4/149) 5.14 5e-06 7.2e-05
GO:0097159 organic cyclic compound binding 32.89% (49/149) 0.86 1.1e-05 0.000164
GO:0005515 protein binding 24.16% (36/149) 1.05 1.5e-05 0.000208
GO:0016779 nucleotidyltransferase activity 4.03% (6/149) 3.37 2.7e-05 0.000374
GO:0006259 DNA metabolic process 5.37% (8/149) 2.74 2.9e-05 0.000392
GO:0035639 purine ribonucleoside triphosphate binding 16.78% (25/149) 1.27 3.8e-05 0.000493
GO:0008094 ATP-dependent activity, acting on DNA 3.36% (5/149) 3.72 4.1e-05 0.000527
GO:0043564 Ku70:Ku80 complex 1.34% (2/149) 7.25 5.7e-05 0.00071
GO:0032040 small-subunit processome 2.01% (3/149) 5.25 6.3e-05 0.000747
GO:0005852 eukaryotic translation initiation factor 3 complex 2.01% (3/149) 5.25 6.3e-05 0.000747
GO:0017056 structural constituent of nuclear pore 2.01% (3/149) 5.25 6.3e-05 0.000747
GO:0003678 DNA helicase activity 2.01% (3/149) 5.18 7.5e-05 0.000866
GO:0030684 preribosome 2.01% (3/149) 5.1 8.8e-05 0.000977
GO:0042254 ribosome biogenesis 2.01% (3/149) 5.1 8.8e-05 0.000977
GO:0006303 double-strand break repair via nonhomologous end joining 1.34% (2/149) 6.84 0.000113 0.00123
GO:0006302 double-strand break repair 2.01% (3/149) 4.97 0.000118 0.001263
GO:0140513 nuclear protein-containing complex 4.7% (7/149) 2.68 0.000121 0.001266
GO:0008033 tRNA processing 2.68% (4/149) 3.86 0.00017 0.001753
GO:0016886 ligase activity, forming phosphoric ester bonds 1.34% (2/149) 6.52 0.000188 0.001805
GO:0043015 gamma-tubulin binding 1.34% (2/149) 6.52 0.000188 0.001805
GO:0005815 microtubule organizing center 1.34% (2/149) 6.52 0.000188 0.001805
GO:0000922 spindle pole 1.34% (2/149) 6.52 0.000188 0.001805
GO:0006520 amino acid metabolic process 4.7% (7/149) 2.57 0.000194 0.001831
GO:0017076 purine nucleotide binding 17.45% (26/149) 1.07 0.000226 0.002104
GO:0003824 catalytic activity 37.58% (56/149) 0.62 0.000243 0.002225
GO:0032555 purine ribonucleotide binding 16.78% (25/149) 1.09 0.000265 0.002391
GO:0005789 endoplasmic reticulum membrane 2.01% (3/149) 4.57 0.000274 0.002434
GO:0007020 microtubule nucleation 1.34% (2/149) 6.25 0.000281 0.002454
GO:0032553 ribonucleotide binding 16.78% (25/149) 1.07 0.000322 0.002775
GO:0003723 RNA binding 7.38% (11/149) 1.8 0.00036 0.003053
GO:0097367 carbohydrate derivative binding 16.78% (25/149) 1.05 0.000373 0.003122
GO:0044085 cellular component biogenesis 2.68% (4/149) 3.52 0.000426 0.003516
GO:0005524 ATP binding 14.09% (21/149) 1.15 0.000481 0.003912
GO:0033043 regulation of organelle organization 2.01% (3/149) 4.25 0.000524 0.004198
GO:0000166 nucleotide binding 17.45% (26/149) 0.99 0.00054 0.004213
GO:1901265 nucleoside phosphate binding 17.45% (26/149) 0.99 0.00054 0.004213
GO:0000723 telomere maintenance 1.34% (2/149) 5.67 0.000668 0.005072
GO:0032200 telomere organization 1.34% (2/149) 5.67 0.000668 0.005072
GO:0046907 intracellular transport 4.03% (6/149) 2.5 0.00072 0.005398
GO:0051649 establishment of localization in cell 4.03% (6/149) 2.49 0.000752 0.005561
GO:0006281 DNA repair 3.36% (5/149) 2.81 0.000769 0.005613
GO:0042162 telomeric DNA binding 1.34% (2/149) 5.52 0.000833 0.006005
GO:0071840 cellular component organization or biogenesis 6.71% (10/149) 1.75 0.000855 0.006091
GO:0018193 peptidyl-amino acid modification 2.68% (4/149) 3.21 0.000952 0.00654
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.01% (3/149) 3.97 0.000947 0.006585
GO:0006974 DNA damage response 3.36% (5/149) 2.74 0.000978 0.006637
GO:1901363 heterocyclic compound binding 17.45% (26/149) 0.94 0.000945 0.006646
GO:0032271 regulation of protein polymerization 1.34% (2/149) 5.38 0.001015 0.006653
GO:1902903 regulation of supramolecular fiber organization 1.34% (2/149) 5.38 0.001015 0.006653
GO:0043254 regulation of protein-containing complex assembly 1.34% (2/149) 5.38 0.001015 0.006653
GO:0036094 small molecule binding 17.45% (26/149) 0.93 0.001066 0.006912
GO:0043167 ion binding 24.16% (36/149) 0.73 0.001293 0.008286
GO:0019752 carboxylic acid metabolic process 5.37% (8/149) 1.91 0.001383 0.008676
GO:0043168 anion binding 16.78% (25/149) 0.92 0.001374 0.008711
GO:0043436 oxoacid metabolic process 5.37% (8/149) 1.91 0.001438 0.008922
GO:0006082 organic acid metabolic process 5.37% (8/149) 1.9 0.001457 0.008941
GO:0097747 RNA polymerase activity 2.01% (3/149) 3.72 0.001541 0.009261
GO:0034062 5'-3' RNA polymerase activity 2.01% (3/149) 3.72 0.001541 0.009261
GO:0005730 nucleolus 1.34% (2/149) 5.03 0.001665 0.009901
GO:0005634 nucleus 4.7% (7/149) 2.02 0.001815 0.010688
GO:0000049 tRNA binding 1.34% (2/149) 4.93 0.001915 0.010834
GO:0110165 cellular anatomical entity 14.77% (22/149) 0.97 0.001864 0.010864
GO:0003724 RNA helicase activity 2.01% (3/149) 3.62 0.001908 0.010901
GO:0008186 ATP-dependent activity, acting on RNA 2.01% (3/149) 3.62 0.001908 0.010901
GO:0006913 nucleocytoplasmic transport 2.01% (3/149) 3.59 0.002008 0.011248
GO:0033554 cellular response to stress 3.36% (5/149) 2.49 0.002073 0.011499
GO:0043227 membrane-bounded organelle 5.37% (8/149) 1.8 0.002237 0.011626
GO:0043231 intracellular membrane-bounded organelle 5.37% (8/149) 1.8 0.002237 0.011626
GO:0031267 small GTPase binding 1.34% (2/149) 4.84 0.002182 0.01166
GO:0051020 GTPase binding 1.34% (2/149) 4.84 0.002182 0.01166
GO:0044087 regulation of cellular component biogenesis 1.34% (2/149) 4.84 0.002182 0.01166
GO:0051169 nuclear transport 2.01% (3/149) 3.54 0.002217 0.011734
GO:0030554 adenyl nucleotide binding 14.77% (22/149) 0.95 0.002163 0.011887
GO:0051128 regulation of cellular component organization 2.01% (3/149) 3.52 0.002326 0.011983
GO:0003684 damaged DNA binding 1.34% (2/149) 4.75 0.002466 0.012375
GO:0008641 ubiquitin-like modifier activating enzyme activity 1.34% (2/149) 4.75 0.002466 0.012375
GO:0005737 cytoplasm 3.36% (5/149) 2.43 0.002448 0.012501
GO:0051716 cellular response to stimulus 3.36% (5/149) 2.42 0.002549 0.01268
GO:0032559 adenyl ribonucleotide binding 14.09% (21/149) 0.96 0.002607 0.012857
GO:0005643 nuclear pore 1.34% (2/149) 4.59 0.003083 0.015078
GO:0034654 nucleobase-containing compound biosynthetic process 4.03% (6/149) 2.06 0.003376 0.016371
GO:0051641 cellular localization 4.03% (6/149) 2.02 0.003794 0.018091
GO:0051493 regulation of cytoskeleton organization 1.34% (2/149) 4.45 0.003765 0.018104
GO:0031113 regulation of microtubule polymerization 0.67% (1/149) 7.84 0.004366 0.018523
GO:0140496 gamma-tubulin complex binding 0.67% (1/149) 7.84 0.004366 0.018523
GO:0101030 tRNA-guanine transglycosylation 0.67% (1/149) 7.84 0.004366 0.018523
GO:0006266 DNA ligation 0.67% (1/149) 7.84 0.004366 0.018523
GO:0051103 DNA ligation involved in DNA repair 0.67% (1/149) 7.84 0.004366 0.018523
GO:0010968 regulation of microtubule nucleation 0.67% (1/149) 7.84 0.004366 0.018523
GO:0031110 regulation of microtubule polymerization or depolymerization 0.67% (1/149) 7.84 0.004366 0.018523
GO:0043139 5'-3' DNA helicase activity 0.67% (1/149) 7.84 0.004366 0.018523
GO:0016925 protein sumoylation 0.67% (1/149) 7.84 0.004366 0.018523
GO:0019948 SUMO activating enzyme activity 0.67% (1/149) 7.84 0.004366 0.018523
GO:0008452 RNA ligase activity 0.67% (1/149) 7.84 0.004366 0.018523
GO:0003972 RNA ligase (ATP) activity 0.67% (1/149) 7.84 0.004366 0.018523
GO:0097255 R2TP complex 0.67% (1/149) 7.84 0.004366 0.018523
GO:0018279 protein N-linked glycosylation via asparagine 0.67% (1/149) 7.84 0.004366 0.018523
GO:1901564 organonitrogen compound metabolic process 17.45% (26/149) 0.77 0.004813 0.020271
GO:0006886 intracellular protein transport 2.68% (4/149) 2.61 0.004319 0.020427
GO:0009451 RNA modification 2.68% (4/149) 2.55 0.00496 0.020739
GO:0006260 DNA replication 2.01% (3/149) 3.1 0.005241 0.021756
GO:0051168 nuclear export 1.34% (2/149) 4.2 0.005318 0.021916
GO:0003697 single-stranded DNA binding 1.34% (2/149) 4.08 0.006186 0.025137
GO:0016877 ligase activity, forming carbon-sulfur bonds 1.34% (2/149) 4.08 0.006186 0.025137
GO:1990904 ribonucleoprotein complex 2.68% (4/149) 2.45 0.006428 0.025935
GO:0005096 GTPase activator activity 1.34% (2/149) 3.98 0.007115 0.028509
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation 0.67% (1/149) 6.84 0.008713 0.029572
GO:0010155 regulation of proton transport 0.67% (1/149) 6.84 0.008713 0.029572
GO:0006434 seryl-tRNA aminoacylation 0.67% (1/149) 6.84 0.008713 0.029572
GO:0008296 3'-5'-DNA exonuclease activity 0.67% (1/149) 6.84 0.008713 0.029572
GO:0004828 serine-tRNA ligase activity 0.67% (1/149) 6.84 0.008713 0.029572
GO:0008193 tRNA guanylyltransferase activity 0.67% (1/149) 6.84 0.008713 0.029572
GO:0033750 ribosome localization 0.67% (1/149) 6.84 0.008713 0.029572
GO:0042273 ribosomal large subunit biogenesis 0.67% (1/149) 6.84 0.008713 0.029572
GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation 0.67% (1/149) 6.84 0.008713 0.029572
GO:1904062 regulation of monoatomic cation transmembrane transport 0.67% (1/149) 6.84 0.008713 0.029572
GO:0000055 ribosomal large subunit export from nucleus 0.67% (1/149) 6.84 0.008713 0.029572
GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity 0.67% (1/149) 6.84 0.008713 0.029572
GO:0000054 ribosomal subunit export from nucleus 0.67% (1/149) 6.84 0.008713 0.029572
GO:0007021 tubulin complex assembly 0.67% (1/149) 6.84 0.008713 0.029572
GO:0004654 polyribonucleotide nucleotidyltransferase activity 0.67% (1/149) 6.84 0.008713 0.029572
GO:0006430 lysyl-tRNA aminoacylation 0.67% (1/149) 6.84 0.008713 0.029572
GO:0004824 lysine-tRNA ligase activity 0.67% (1/149) 6.84 0.008713 0.029572
GO:0006435 threonyl-tRNA aminoacylation 0.67% (1/149) 6.84 0.008713 0.029572
GO:0008479 tRNA-guanosine(34) queuine transglycosylase activity 0.67% (1/149) 6.84 0.008713 0.029572
GO:0006425 glutaminyl-tRNA aminoacylation 0.67% (1/149) 6.84 0.008713 0.029572
GO:0004819 glutamine-tRNA ligase activity 0.67% (1/149) 6.84 0.008713 0.029572
GO:0004829 threonine-tRNA ligase activity 0.67% (1/149) 6.84 0.008713 0.029572
GO:0048487 beta-tubulin binding 0.67% (1/149) 6.84 0.008713 0.029572
GO:0043412 macromolecule modification 11.41% (17/149) 0.92 0.00879 0.029661
GO:0043229 intracellular organelle 6.71% (10/149) 1.3 0.007818 0.030899
GO:0043226 organelle 6.71% (10/149) 1.3 0.007818 0.030899
GO:0044281 small molecule metabolic process 6.04% (9/149) 1.38 0.008075 0.031697
GO:0003677 DNA binding 8.72% (13/149) 1.06 0.01002 0.033615
GO:0000413 protein peptidyl-prolyl isomerization 1.34% (2/149) 3.71 0.01025 0.033991
GO:0018208 peptidyl-proline modification 1.34% (2/149) 3.71 0.01025 0.033991
GO:0019438 aromatic compound biosynthetic process 4.03% (6/149) 1.72 0.010332 0.034068
GO:0043413 macromolecule glycosylation 2.01% (3/149) 2.74 0.010491 0.0342
GO:0006486 protein glycosylation 2.01% (3/149) 2.74 0.010491 0.0342
GO:0032774 RNA biosynthetic process 2.68% (4/149) 2.22 0.011094 0.035761
GO:0031090 organelle membrane 2.01% (3/149) 2.71 0.011051 0.035822
GO:0018130 heterocycle biosynthetic process 4.03% (6/149) 1.69 0.011385 0.036497
GO:0070085 glycosylation 2.01% (3/149) 2.68 0.011627 0.037066
GO:0034765 regulation of monoatomic ion transmembrane transport 0.67% (1/149) 6.25 0.013041 0.038002
GO:0004825 methionine-tRNA ligase activity 0.67% (1/149) 6.25 0.013041 0.038002
GO:0006431 methionyl-tRNA aminoacylation 0.67% (1/149) 6.25 0.013041 0.038002
GO:0003910 DNA ligase (ATP) activity 0.67% (1/149) 6.25 0.013041 0.038002
GO:0006433 prolyl-tRNA aminoacylation 0.67% (1/149) 6.25 0.013041 0.038002
GO:0051377 mannose-ethanolamine phosphotransferase activity 0.67% (1/149) 6.25 0.013041 0.038002
GO:0051731 polynucleotide 5'-hydroxyl-kinase activity 0.67% (1/149) 6.25 0.013041 0.038002
GO:0007023 post-chaperonin tubulin folding pathway 0.67% (1/149) 6.25 0.013041 0.038002
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins 0.67% (1/149) 6.25 0.013041 0.038002
GO:0004817 cysteine-tRNA ligase activity 0.67% (1/149) 6.25 0.013041 0.038002
GO:0004827 proline-tRNA ligase activity 0.67% (1/149) 6.25 0.013041 0.038002
GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity 0.67% (1/149) 6.25 0.013041 0.038002
GO:0004576 oligosaccharyl transferase activity 0.67% (1/149) 6.25 0.013041 0.038002
GO:0006423 cysteinyl-tRNA aminoacylation 0.67% (1/149) 6.25 0.013041 0.038002
GO:0008192 RNA guanylyltransferase activity 0.67% (1/149) 6.25 0.013041 0.038002
GO:0031503 protein-containing complex localization 0.67% (1/149) 6.25 0.013041 0.038002
GO:0006400 tRNA modification 1.34% (2/149) 3.52 0.013248 0.038412
GO:0015631 tubulin binding 2.01% (3/149) 2.63 0.012831 0.04068
GO:0015031 protein transport 2.68% (4/149) 2.1 0.014637 0.042228
GO:0008408 3'-5' exonuclease activity 1.34% (2/149) 3.41 0.015207 0.043438
GO:0030117 membrane coat 1.34% (2/149) 3.41 0.015207 0.043438
GO:0000226 microtubule cytoskeleton organization 1.34% (2/149) 3.38 0.015886 0.045154
GO:0005525 GTP binding 2.68% (4/149) 2.05 0.016282 0.045827
GO:0032561 guanyl ribonucleotide binding 2.68% (4/149) 2.05 0.016282 0.045827
GO:0005672 transcription factor TFIIA complex 0.67% (1/149) 5.84 0.01735 0.046133
GO:0032300 mismatch repair complex 0.67% (1/149) 5.84 0.01735 0.046133
GO:0051656 establishment of organelle localization 0.67% (1/149) 5.84 0.01735 0.046133
GO:0003909 DNA ligase activity 0.67% (1/149) 5.84 0.01735 0.046133
GO:0030870 Mre11 complex 0.67% (1/149) 5.84 0.01735 0.046133
GO:0097428 protein maturation by iron-sulfur cluster transfer 0.67% (1/149) 5.84 0.01735 0.046133
GO:0004809 obsolete tRNA (guanine-N2-)-methyltransferase activity 0.67% (1/149) 5.84 0.01735 0.046133
GO:0043269 regulation of monoatomic ion transport 0.67% (1/149) 5.84 0.01735 0.046133
GO:0016579 protein deubiquitination 1.34% (2/149) 3.35 0.016578 0.046434
GO:0070646 protein modification by small protein removal 1.34% (2/149) 3.28 0.018 0.047208
GO:0004843 cysteine-type deubiquitinase activity 1.34% (2/149) 3.28 0.018 0.047208
GO:0017111 ribonucleoside triphosphate phosphatase activity 4.03% (6/149) 1.54 0.018139 0.047359
GO:0006457 protein folding 2.01% (3/149) 2.45 0.017963 0.047545
GO:1901362 organic cyclic compound biosynthetic process 4.03% (6/149) 1.55 0.017315 0.047802
GO:0008047 enzyme activator activity 1.34% (2/149) 3.32 0.017282 0.047942
GO:0019001 guanyl nucleotide binding 2.68% (4/149) 2.03 0.017271 0.048143
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (149) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms