Coexpression cluster: Cluster_218 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0090304 nucleic acid metabolic process 19.82% (22/111) 2.75 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 19.82% (22/111) 2.4 0.0 0.0
GO:0003723 RNA binding 15.32% (17/111) 2.85 0.0 0.0
GO:0046483 heterocycle metabolic process 19.82% (22/111) 2.27 0.0 0.0
GO:0003676 nucleic acid binding 27.93% (31/111) 1.77 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 21.62% (24/111) 2.1 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 19.82% (22/111) 2.23 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 19.82% (22/111) 2.19 0.0 0.0
GO:0016070 RNA metabolic process 13.51% (15/111) 2.64 0.0 1e-06
GO:0005488 binding 55.86% (62/111) 0.83 0.0 3e-06
GO:0140640 catalytic activity, acting on a nucleic acid 10.81% (12/111) 2.75 0.0 8e-06
GO:0006259 DNA metabolic process 8.11% (9/111) 3.34 0.0 9e-06
GO:0097159 organic cyclic compound binding 37.84% (42/111) 1.06 1e-06 2.2e-05
GO:0006281 DNA repair 6.31% (7/111) 3.72 1e-06 2.8e-05
GO:0006974 DNA damage response 6.31% (7/111) 3.65 2e-06 3.7e-05
GO:0004386 helicase activity 5.41% (6/111) 3.98 2e-06 5.3e-05
GO:0140657 ATP-dependent activity 9.01% (10/111) 2.67 4e-06 8.7e-05
GO:0033554 cellular response to stress 6.31% (7/111) 3.4 5e-06 9.6e-05
GO:0051716 cellular response to stimulus 6.31% (7/111) 3.33 7e-06 0.000124
GO:0043170 macromolecule metabolic process 27.03% (30/111) 1.21 8e-06 0.000132
GO:0006396 RNA processing 7.21% (8/111) 2.81 2e-05 0.000338
GO:0003674 molecular_function 68.47% (76/111) 0.48 2.6e-05 0.000409
GO:0006352 DNA-templated transcription initiation 3.6% (4/111) 4.46 3.4e-05 0.000518
GO:0006807 nitrogen compound metabolic process 27.03% (30/111) 1.04 7.6e-05 0.001104
GO:0005667 transcription regulator complex 3.6% (4/111) 4.07 9.7e-05 0.001355
GO:0016072 rRNA metabolic process 3.6% (4/111) 3.94 0.000139 0.00186
GO:0044237 cellular metabolic process 24.32% (27/111) 0.99 0.000342 0.004426
GO:0009987 cellular process 33.33% (37/111) 0.78 0.000363 0.00453
GO:0032774 RNA biosynthetic process 4.5% (5/111) 2.96 0.000476 0.005725
GO:0044238 primary metabolic process 28.83% (32/111) 0.84 0.000506 0.005888
GO:0034660 ncRNA metabolic process 4.5% (5/111) 2.89 0.000595 0.006703
GO:0030983 mismatched DNA binding 1.8% (2/111) 5.68 0.000677 0.006952
GO:0006298 mismatch repair 1.8% (2/111) 5.68 0.000677 0.006952
GO:0090575 RNA polymerase II transcription regulator complex 2.7% (3/111) 4.15 0.000659 0.007186
GO:0032991 protein-containing complex 9.91% (11/111) 1.62 0.000932 0.00929
GO:0034470 ncRNA processing 3.6% (4/111) 3.14 0.001157 0.011212
GO:0140513 nuclear protein-containing complex 4.5% (5/111) 2.62 0.001382 0.012692
GO:0140097 catalytic activity, acting on DNA 3.6% (4/111) 3.07 0.00135 0.012735
GO:0006289 nucleotide-excision repair 1.8% (2/111) 5.09 0.00155 0.013525
GO:0016817 hydrolase activity, acting on acid anhydrides 6.31% (7/111) 2.06 0.001524 0.013639
GO:0035639 purine ribonucleoside triphosphate binding 15.32% (17/111) 1.13 0.001764 0.014319
GO:0006367 transcription initiation at RNA polymerase II promoter 1.8% (2/111) 5.02 0.001729 0.014366
GO:0005524 ATP binding 14.41% (16/111) 1.19 0.001699 0.014464
GO:0042254 ribosome biogenesis 1.8% (2/111) 4.94 0.001917 0.014867
GO:0006364 rRNA processing 2.7% (3/111) 3.62 0.001907 0.015125
GO:0071704 organic substance metabolic process 28.83% (32/111) 0.73 0.001995 0.015135
GO:0016887 ATP hydrolysis activity 4.5% (5/111) 2.41 0.002635 0.019569
GO:0070925 organelle assembly 1.8% (2/111) 4.68 0.002761 0.020075
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity 0.9% (1/111) 8.26 0.003252 0.020269
GO:0000012 single strand break repair 0.9% (1/111) 8.26 0.003252 0.020269
GO:0018271 biotin-protein ligase activity 0.9% (1/111) 8.26 0.003252 0.020269
GO:0033699 DNA 5'-adenosine monophosphate hydrolase activity 0.9% (1/111) 8.26 0.003252 0.020269
GO:0008152 metabolic process 29.73% (33/111) 0.68 0.00293 0.020453
GO:0015748 organophosphate ester transport 1.8% (2/111) 4.62 0.002995 0.020494
GO:0008094 ATP-dependent activity, acting on DNA 2.7% (3/111) 3.41 0.00291 0.020727
GO:0000166 nucleotide binding 17.12% (19/111) 0.96 0.003546 0.021337
GO:1901265 nucleoside phosphate binding 17.12% (19/111) 0.96 0.003546 0.021337
GO:0022613 ribonucleoprotein complex biogenesis 1.8% (2/111) 4.56 0.003237 0.021729
GO:0034654 nucleobase-containing compound biosynthetic process 4.5% (5/111) 2.22 0.00456 0.026976
GO:0009059 macromolecule biosynthetic process 6.31% (7/111) 1.77 0.004638 0.02698
GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 1.8% (2/111) 4.26 0.004879 0.027912
GO:1901363 heterocyclic compound binding 17.12% (19/111) 0.91 0.005329 0.029998
GO:0036094 small molecule binding 17.12% (19/111) 0.9 0.005821 0.032249
GO:0045116 protein neddylation 0.9% (1/111) 7.26 0.006494 0.032848
GO:0019781 NEDD8 activating enzyme activity 0.9% (1/111) 7.26 0.006494 0.032848
GO:0032555 purine ribonucleotide binding 15.32% (17/111) 0.96 0.006235 0.032969
GO:0140098 catalytic activity, acting on RNA 4.5% (5/111) 2.09 0.006621 0.033009
GO:0006401 RNA catabolic process 1.8% (2/111) 4.02 0.006827 0.033094
GO:0016462 pyrophosphatase activity 5.41% (6/111) 1.87 0.006192 0.033245
GO:0032559 adenyl ribonucleotide binding 14.41% (16/111) 0.99 0.006395 0.033312
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.41% (6/111) 1.84 0.006792 0.033388
GO:0016787 hydrolase activity 14.41% (16/111) 1.0 0.006181 0.033707
GO:0032553 ribonucleotide binding 15.32% (17/111) 0.94 0.007066 0.03378
GO:0006996 organelle organization 3.6% (4/111) 2.38 0.007498 0.035362
GO:0097367 carbohydrate derivative binding 15.32% (17/111) 0.92 0.007767 0.036141
GO:0043168 anion binding 16.22% (18/111) 0.87 0.00858 0.039402
GO:0071339 MLL1 complex 0.9% (1/111) 6.68 0.009726 0.041393
GO:0042256 cytosolic ribosome assembly 0.9% (1/111) 6.68 0.009726 0.041393
GO:0044665 MLL1/2 complex 0.9% (1/111) 6.68 0.009726 0.041393
GO:0035312 5'-3' DNA exonuclease activity 0.9% (1/111) 6.68 0.009726 0.041393
GO:0002151 G-quadruplex RNA binding 0.9% (1/111) 6.68 0.009726 0.041393
GO:0017076 purine nucleotide binding 15.32% (17/111) 0.89 0.009882 0.041553
GO:0003690 double-stranded DNA binding 2.7% (3/111) 2.8 0.009258 0.04196
GO:0030554 adenyl nucleotide binding 14.41% (16/111) 0.92 0.01018 0.042295
GO:0008150 biological_process 43.24% (48/111) 0.42 0.01061 0.043563
GO:0018130 heterocycle biosynthetic process 4.5% (5/111) 1.85 0.013025 0.045458
GO:0003712 transcription coregulator activity 1.8% (2/111) 3.54 0.012966 0.045709
GO:0003691 double-stranded telomeric DNA binding 0.9% (1/111) 6.26 0.012947 0.046106
GO:0031125 rRNA 3'-end processing 0.9% (1/111) 6.26 0.012947 0.046106
GO:0034661 ncRNA catabolic process 0.9% (1/111) 6.26 0.012947 0.046106
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.9% (1/111) 6.26 0.012947 0.046106
GO:0016075 rRNA catabolic process 0.9% (1/111) 6.26 0.012947 0.046106
GO:0006303 double-strand break repair via nonhomologous end joining 0.9% (1/111) 6.26 0.012947 0.046106
GO:0000910 cytokinesis 0.9% (1/111) 6.26 0.012947 0.046106
GO:0000911 cytokinesis by cell plate formation 0.9% (1/111) 6.26 0.012947 0.046106
GO:0032300 mismatch repair complex 0.9% (1/111) 6.26 0.012947 0.046106
GO:0042255 ribosome assembly 0.9% (1/111) 6.26 0.012947 0.046106
GO:0005672 transcription factor TFIIA complex 0.9% (1/111) 6.26 0.012947 0.046106
GO:0044271 cellular nitrogen compound biosynthetic process 6.31% (7/111) 1.46 0.01393 0.048135
GO:0004527 exonuclease activity 1.8% (2/111) 3.59 0.012048 0.048329
GO:0019438 aromatic compound biosynthetic process 4.5% (5/111) 1.88 0.011973 0.048586
GO:0008186 ATP-dependent activity, acting on RNA 1.8% (2/111) 3.46 0.014399 0.04879
GO:0003724 RNA helicase activity 1.8% (2/111) 3.46 0.014399 0.04879
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (111) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms