Coexpression cluster: Cluster_62 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0140658 ATP-dependent chromatin remodeler activity 4.2% (6/143) 5.16 0.0 4e-06
GO:0140640 catalytic activity, acting on a nucleic acid 10.49% (15/143) 2.71 0.0 6e-06
GO:0140097 catalytic activity, acting on DNA 5.59% (8/143) 3.71 0.0 3.4e-05
GO:0090304 nucleic acid metabolic process 11.89% (17/143) 2.01 1e-06 0.000117
GO:0140657 ATP-dependent activity 8.39% (12/143) 2.57 1e-06 0.000127
GO:0008094 ATP-dependent activity, acting on DNA 4.2% (6/143) 4.04 2e-06 0.000134
GO:0006139 nucleobase-containing compound metabolic process 13.29% (19/143) 1.82 2e-06 0.000153
GO:0031326 regulation of cellular biosynthetic process 13.29% (19/143) 1.7 6e-06 0.000279
GO:0009889 regulation of biosynthetic process 13.29% (19/143) 1.7 6e-06 0.000279
GO:0046483 heterocycle metabolic process 13.29% (19/143) 1.69 7e-06 0.000289
GO:0010556 regulation of macromolecule biosynthetic process 13.29% (19/143) 1.71 6e-06 0.000334
GO:0006325 chromatin organization 3.5% (5/143) 4.09 1.2e-05 0.000348
GO:0060255 regulation of macromolecule metabolic process 13.29% (19/143) 1.64 1.1e-05 0.000354
GO:0019222 regulation of metabolic process 13.29% (19/143) 1.63 1.3e-05 0.00036
GO:0031323 regulation of cellular metabolic process 13.29% (19/143) 1.64 1.1e-05 0.000367
GO:0010468 regulation of gene expression 13.29% (19/143) 1.71 6e-06 0.000368
GO:0004386 helicase activity 4.2% (6/143) 3.61 1e-05 0.000375
GO:0006725 cellular aromatic compound metabolic process 13.29% (19/143) 1.66 1e-05 0.000377
GO:0016070 RNA metabolic process 9.09% (13/143) 2.07 1.5e-05 0.00038
GO:1901360 organic cyclic compound metabolic process 13.29% (19/143) 1.62 1.4e-05 0.000382
GO:0005488 binding 48.25% (69/143) 0.62 1.9e-05 0.000459
GO:0032774 RNA biosynthetic process 4.9% (7/143) 3.08 2.1e-05 0.000475
GO:0071824 protein-DNA complex organization 3.5% (5/143) 3.85 2.7e-05 0.00059
GO:0016071 mRNA metabolic process 4.2% (6/143) 3.27 3.9e-05 0.000795
GO:0016579 protein deubiquitination 2.8% (4/143) 4.41 3.9e-05 0.000811
GO:0004843 cysteine-type deubiquitinase activity 2.8% (4/143) 4.34 4.6e-05 0.000857
GO:0070646 protein modification by small protein removal 2.8% (4/143) 4.34 4.6e-05 0.000857
GO:0050789 regulation of biological process 15.38% (22/143) 1.35 5e-05 0.000902
GO:0050794 regulation of cellular process 14.69% (21/143) 1.36 6.3e-05 0.001104
GO:0051171 regulation of nitrogen compound metabolic process 11.89% (17/143) 1.56 6.8e-05 0.001144
GO:0080090 regulation of primary metabolic process 11.89% (17/143) 1.55 7e-05 0.001147
GO:0065007 biological regulation 15.38% (22/143) 1.31 7.4e-05 0.00117
GO:0034654 nucleobase-containing compound biosynthetic process 5.59% (8/143) 2.53 8.1e-05 0.001232
GO:0101005 deubiquitinase activity 2.8% (4/143) 4.04 0.000105 0.001517
GO:0051252 regulation of RNA metabolic process 11.19% (16/143) 1.57 0.000103 0.001531
GO:0019219 regulation of nucleobase-containing compound metabolic process 11.19% (16/143) 1.55 0.000117 0.001593
GO:0034641 cellular nitrogen compound metabolic process 13.29% (19/143) 1.39 0.000114 0.0016
GO:0019783 ubiquitin-like protein peptidase activity 2.8% (4/143) 3.97 0.000128 0.001702
GO:0035639 purine ribonucleoside triphosphate binding 16.08% (23/143) 1.21 0.000146 0.001889
GO:0006397 mRNA processing 3.5% (5/143) 3.3 0.000162 0.002045
GO:0032991 protein-containing complex 9.79% (14/143) 1.6 0.000226 0.002786
GO:0003676 nucleic acid binding 17.48% (25/143) 1.1 0.000234 0.002808
GO:0016462 pyrophosphatase activity 6.29% (9/143) 2.09 0.000289 0.003041
GO:1901265 nucleoside phosphate binding 18.18% (26/143) 1.05 0.00028 0.003071
GO:0000166 nucleotide binding 18.18% (26/143) 1.05 0.00028 0.003071
GO:0017076 purine nucleotide binding 17.48% (25/143) 1.08 0.000287 0.003081
GO:0005524 ATP binding 14.69% (21/143) 1.21 0.000274 0.003139
GO:0006351 DNA-templated transcription 3.5% (5/143) 3.14 0.00027 0.003167
GO:0006355 regulation of DNA-templated transcription 10.49% (15/143) 1.48 0.000322 0.00325
GO:2001141 regulation of RNA biosynthetic process 10.49% (15/143) 1.48 0.000322 0.00325
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.29% (9/143) 2.06 0.000334 0.003303
GO:0032555 purine ribonucleotide binding 16.78% (24/143) 1.09 0.000347 0.003303
GO:0016817 hydrolase activity, acting on acid anhydrides 6.29% (9/143) 2.06 0.000343 0.003332
GO:0097159 organic cyclic compound binding 30.07% (43/143) 0.73 0.000363 0.003394
GO:0006807 nitrogen compound metabolic process 23.78% (34/143) 0.85 0.000392 0.003599
GO:0019438 aromatic compound biosynthetic process 5.59% (8/143) 2.19 0.0004 0.003604
GO:0032553 ribonucleotide binding 16.78% (24/143) 1.07 0.000418 0.003703
GO:0018130 heterocycle biosynthetic process 5.59% (8/143) 2.16 0.00046 0.004004
GO:0019941 modification-dependent protein catabolic process 3.5% (5/143) 2.94 0.000508 0.004073
GO:0006511 ubiquitin-dependent protein catabolic process 3.5% (5/143) 2.94 0.000508 0.004073
GO:0043632 modification-dependent macromolecule catabolic process 3.5% (5/143) 2.94 0.000508 0.004073
GO:0030554 adenyl nucleotide binding 16.08% (23/143) 1.07 0.00053 0.004114
GO:0097367 carbohydrate derivative binding 16.78% (24/143) 1.05 0.000482 0.004122
GO:0008234 cysteine-type peptidase activity 3.5% (5/143) 2.94 0.000523 0.004129
GO:1901363 heterocyclic compound binding 18.18% (26/143) 1.0 0.000499 0.004199
GO:0036094 small molecule binding 18.18% (26/143) 0.99 0.000566 0.004328
GO:0032559 adenyl ribonucleotide binding 15.38% (22/143) 1.08 0.000652 0.004913
GO:0009057 macromolecule catabolic process 4.2% (6/143) 2.5 0.000717 0.005322
GO:1901362 organic cyclic compound biosynthetic process 5.59% (8/143) 2.03 0.000846 0.006107
GO:0051603 proteolysis involved in protein catabolic process 3.5% (5/143) 2.79 0.000835 0.006108
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.59% (8/143) 2.01 0.000906 0.006445
GO:0043687 post-translational protein modification 4.9% (7/143) 2.19 0.000926 0.006494
GO:0043170 macromolecule metabolic process 20.98% (30/143) 0.84 0.001016 0.00703
GO:0003712 transcription coregulator activity 2.1% (3/143) 3.76 0.001447 0.009618
GO:0016887 ATP hydrolysis activity 4.2% (6/143) 2.3 0.001444 0.009726
GO:0005634 nucleus 4.9% (7/143) 2.08 0.001435 0.009792
GO:0050832 defense response to fungus 1.4% (2/143) 5.09 0.001535 0.009938
GO:0009620 response to fungus 1.4% (2/143) 5.09 0.001535 0.009938
GO:0008186 ATP-dependent activity, acting on RNA 2.1% (3/143) 3.68 0.001697 0.010581
GO:0003724 RNA helicase activity 2.1% (3/143) 3.68 0.001697 0.010581
GO:0043168 anion binding 16.78% (24/143) 0.92 0.001686 0.01078
GO:0019899 enzyme binding 2.1% (3/143) 3.58 0.00207 0.012746
GO:0006338 chromatin remodeling 2.1% (3/143) 3.55 0.00217 0.013204
GO:0043933 protein-containing complex organization 3.5% (5/143) 2.43 0.0025 0.015029
GO:0003714 transcription corepressor activity 1.4% (2/143) 4.73 0.002552 0.015165
GO:0006382 adenosine to inosine editing 0.7% (1/143) 7.9 0.00419 0.020744
GO:0003861 3-isopropylmalate dehydratase activity 0.7% (1/143) 7.9 0.00419 0.020744
GO:0008251 tRNA-specific adenosine deaminase activity 0.7% (1/143) 7.9 0.00419 0.020744
GO:0071921 cohesin loading 0.7% (1/143) 7.9 0.00419 0.020744
GO:0004198 calcium-dependent cysteine-type endopeptidase activity 0.7% (1/143) 7.9 0.00419 0.020744
GO:0034502 protein localization to chromosome 0.7% (1/143) 7.9 0.00419 0.020744
GO:0016035 zeta DNA polymerase complex 0.7% (1/143) 7.9 0.00419 0.020744
GO:0061780 mitotic cohesin loading 0.7% (1/143) 7.9 0.00419 0.020744
GO:0071168 protein localization to chromatin 0.7% (1/143) 7.9 0.00419 0.020744
GO:0140033 acetylation-dependent protein binding 0.7% (1/143) 7.9 0.00419 0.020744
GO:0070577 lysine-acetylated histone binding 0.7% (1/143) 7.9 0.00419 0.020744
GO:0016504 peptidase activator activity 0.7% (1/143) 7.9 0.00419 0.020744
GO:0002100 tRNA wobble adenosine to inosine editing 0.7% (1/143) 7.9 0.00419 0.020744
GO:0140030 modification-dependent protein binding 0.7% (1/143) 7.9 0.00419 0.020744
GO:0006396 RNA processing 4.2% (6/143) 2.03 0.003727 0.021886
GO:0008150 biological_process 43.36% (62/143) 0.42 0.003832 0.022245
GO:0016043 cellular component organization 5.59% (8/143) 1.66 0.004022 0.023082
GO:0003674 molecular_function 60.14% (86/143) 0.3 0.004828 0.023669
GO:0051168 nuclear export 1.4% (2/143) 4.25 0.00491 0.023841
GO:0006281 DNA repair 2.8% (4/143) 2.55 0.005008 0.023861
GO:0140535 intracellular protein-containing complex 2.8% (4/143) 2.55 0.005008 0.023861
GO:0009059 macromolecule biosynthetic process 5.59% (8/143) 1.6 0.00526 0.024824
GO:1903047 mitotic cell cycle process 1.4% (2/143) 4.09 0.006136 0.028168
GO:0006259 DNA metabolic process 3.5% (5/143) 2.12 0.00608 0.02817
GO:0006974 DNA damage response 2.8% (4/143) 2.47 0.006045 0.028267
GO:0043231 intracellular membrane-bounded organelle 4.9% (7/143) 1.67 0.006821 0.030755
GO:0043227 membrane-bounded organelle 4.9% (7/143) 1.67 0.006821 0.030755
GO:0050686 negative regulation of mRNA processing 0.7% (1/143) 6.9 0.008363 0.031753
GO:0000993 RNA polymerase II complex binding 0.7% (1/143) 6.9 0.008363 0.031753
GO:0001098 basal transcription machinery binding 0.7% (1/143) 6.9 0.008363 0.031753
GO:0003727 single-stranded RNA binding 0.7% (1/143) 6.9 0.008363 0.031753
GO:0008143 poly(A) binding 0.7% (1/143) 6.9 0.008363 0.031753
GO:0006369 termination of RNA polymerase II transcription 0.7% (1/143) 6.9 0.008363 0.031753
GO:0031440 regulation of mRNA 3'-end processing 0.7% (1/143) 6.9 0.008363 0.031753
GO:0031441 negative regulation of mRNA 3'-end processing 0.7% (1/143) 6.9 0.008363 0.031753
GO:0043487 regulation of RNA stability 0.7% (1/143) 6.9 0.008363 0.031753
GO:0043488 regulation of mRNA stability 0.7% (1/143) 6.9 0.008363 0.031753
GO:0001099 basal RNA polymerase II transcription machinery binding 0.7% (1/143) 6.9 0.008363 0.031753
GO:0061013 regulation of mRNA catabolic process 0.7% (1/143) 6.9 0.008363 0.031753
GO:0070717 poly-purine tract binding 0.7% (1/143) 6.9 0.008363 0.031753
GO:0070628 proteasome binding 0.7% (1/143) 6.9 0.008363 0.031753
GO:1903312 negative regulation of mRNA metabolic process 0.7% (1/143) 6.9 0.008363 0.031753
GO:1900364 negative regulation of mRNA polyadenylation 0.7% (1/143) 6.9 0.008363 0.031753
GO:0004000 adenosine deaminase activity 0.7% (1/143) 6.9 0.008363 0.031753
GO:0022402 cell cycle process 2.1% (3/143) 2.85 0.008427 0.031758
GO:0003677 DNA binding 9.09% (13/143) 1.12 0.007203 0.032188
GO:0010608 post-transcriptional regulation of gene expression 1.4% (2/143) 3.9 0.007964 0.03497
GO:0043167 ion binding 22.38% (32/143) 0.62 0.00792 0.035085
GO:0071840 cellular component organization or biogenesis 5.59% (8/143) 1.49 0.008171 0.035572
GO:0044877 protein-containing complex binding 2.1% (3/143) 2.77 0.00989 0.036997
GO:0070647 protein modification by small protein conjugation or removal 3.5% (5/143) 1.94 0.010053 0.037331
GO:0033554 cellular response to stress 2.8% (4/143) 2.23 0.010861 0.040037
GO:0017053 transcription repressor complex 0.7% (1/143) 6.31 0.012518 0.043003
GO:0000347 THO complex 0.7% (1/143) 6.31 0.012518 0.043003
GO:0038201 TOR complex 0.7% (1/143) 6.31 0.012518 0.043003
GO:0008460 dTDP-glucose 4,6-dehydratase activity 0.7% (1/143) 6.31 0.012518 0.043003
GO:0010945 coenzyme A diphosphatase activity 0.7% (1/143) 6.31 0.012518 0.043003
GO:0019985 translesion synthesis 0.7% (1/143) 6.31 0.012518 0.043003
GO:0006301 postreplication repair 0.7% (1/143) 6.31 0.012518 0.043003
GO:0031929 TOR signaling 0.7% (1/143) 6.31 0.012518 0.043003
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity 0.7% (1/143) 6.31 0.012518 0.043003
GO:0031931 TORC1 complex 0.7% (1/143) 6.31 0.012518 0.043003
GO:0051716 cellular response to stimulus 2.8% (4/143) 2.16 0.012759 0.043535
GO:0030117 membrane coat 1.4% (2/143) 3.47 0.01407 0.047686
GO:0051641 cellular localization 3.5% (5/143) 1.82 0.014168 0.0477
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (143) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms