Coexpression cluster: Cluster_257 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006259 DNA metabolic process 12.27% (20/163) 3.93 0.0 0.0
GO:0006270 DNA replication initiation 4.29% (7/163) 6.82 0.0 0.0
GO:0006260 DNA replication 6.75% (11/163) 4.85 0.0 0.0
GO:0140097 catalytic activity, acting on DNA 7.98% (13/163) 4.22 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 20.25% (33/163) 2.0 0.0 0.0
GO:0042555 MCM complex 3.07% (5/163) 7.03 0.0 0.0
GO:0032392 DNA geometric change 3.07% (5/163) 6.86 0.0 0.0
GO:0032508 DNA duplex unwinding 3.07% (5/163) 6.86 0.0 0.0
GO:0003678 DNA helicase activity 3.68% (6/163) 6.05 0.0 0.0
GO:0008017 microtubule binding 5.52% (9/163) 4.24 0.0 0.0
GO:0008092 cytoskeletal protein binding 6.75% (11/163) 3.58 0.0 0.0
GO:0090304 nucleic acid metabolic process 13.5% (22/163) 2.2 0.0 0.0
GO:0015631 tubulin binding 5.52% (9/163) 4.09 0.0 0.0
GO:0007018 microtubule-based movement 4.29% (7/163) 4.79 0.0 0.0
GO:0003777 microtubule motor activity 4.29% (7/163) 4.74 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 14.72% (24/163) 1.97 0.0 0.0
GO:0051276 chromosome organization 4.29% (7/163) 4.47 0.0 1e-06
GO:0003774 cytoskeletal motor activity 4.29% (7/163) 4.43 0.0 1e-06
GO:0071103 DNA conformation change 3.07% (5/163) 5.64 0.0 1e-06
GO:0046483 heterocycle metabolic process 14.72% (24/163) 1.84 0.0 2e-06
GO:0006725 cellular aromatic compound metabolic process 14.72% (24/163) 1.8 0.0 3e-06
GO:0043226 organelle 11.66% (19/163) 2.1 0.0 3e-06
GO:0043229 intracellular organelle 11.66% (19/163) 2.1 0.0 3e-06
GO:0007017 microtubule-based process 4.91% (8/163) 3.79 0.0 3e-06
GO:1901360 organic cyclic compound metabolic process 14.72% (24/163) 1.76 0.0 4e-06
GO:0140640 catalytic activity, acting on a nucleic acid 8.59% (14/163) 2.42 0.0 1e-05
GO:0043170 macromolecule metabolic process 25.77% (42/163) 1.14 1e-06 1.1e-05
GO:0140657 ATP-dependent activity 7.98% (13/163) 2.49 1e-06 1.3e-05
GO:0006807 nitrogen compound metabolic process 27.61% (45/163) 1.07 1e-06 1.4e-05
GO:0044237 cellular metabolic process 26.38% (43/163) 1.1 1e-06 1.5e-05
GO:0009987 cellular process 35.58% (58/163) 0.87 1e-06 1.7e-05
GO:0006281 DNA repair 4.91% (8/163) 3.36 1e-06 2.3e-05
GO:0006974 DNA damage response 4.91% (8/163) 3.28 2e-06 3.2e-05
GO:0003887 DNA-directed DNA polymerase activity 2.45% (4/163) 5.46 2e-06 3.2e-05
GO:0034061 DNA polymerase activity 2.45% (4/163) 5.39 2e-06 3.7e-05
GO:0008094 ATP-dependent activity, acting on DNA 3.68% (6/163) 3.85 4e-06 6.3e-05
GO:0005524 ATP binding 16.56% (27/163) 1.39 4e-06 6.5e-05
GO:0032991 protein-containing complex 11.04% (18/163) 1.78 6e-06 8.8e-05
GO:0033554 cellular response to stress 4.91% (8/163) 3.04 7e-06 9.8e-05
GO:0035639 purine ribonucleoside triphosphate binding 17.18% (28/163) 1.3 8e-06 0.00012
GO:0051716 cellular response to stimulus 4.91% (8/163) 2.97 9e-06 0.000132
GO:0044238 primary metabolic process 29.45% (48/163) 0.87 1.3e-05 0.000177
GO:0140535 intracellular protein-containing complex 4.29% (7/163) 3.17 1.4e-05 0.000189
GO:0005840 ribosome 5.52% (9/163) 2.61 1.9e-05 0.000244
GO:0006996 organelle organization 4.91% (8/163) 2.83 1.9e-05 0.000244
GO:0004386 helicase activity 3.68% (6/163) 3.42 2.2e-05 0.000272
GO:0043228 non-membrane-bounded organelle 6.13% (10/163) 2.37 2.7e-05 0.000325
GO:0043232 intracellular non-membrane-bounded organelle 6.13% (10/163) 2.37 2.7e-05 0.000325
GO:0006412 translation 5.52% (9/163) 2.51 3.2e-05 0.000361
GO:1901265 nucleoside phosphate binding 19.02% (31/163) 1.12 3.2e-05 0.000362
GO:0000166 nucleotide binding 19.02% (31/163) 1.12 3.2e-05 0.000362
GO:0005575 cellular_component 20.86% (34/163) 1.04 3.4e-05 0.000374
GO:0043043 peptide biosynthetic process 5.52% (9/163) 2.48 3.8e-05 0.000409
GO:0003735 structural constituent of ribosome 5.52% (9/163) 2.47 4e-05 0.00042
GO:0030554 adenyl nucleotide binding 17.18% (28/163) 1.17 4.3e-05 0.000448
GO:0097367 carbohydrate derivative binding 17.79% (29/163) 1.14 4.5e-05 0.000462
GO:0032559 adenyl ribonucleotide binding 16.56% (27/163) 1.19 4.7e-05 0.000473
GO:0009059 macromolecule biosynthetic process 7.36% (12/163) 1.99 5.5e-05 0.000546
GO:0006518 peptide metabolic process 5.52% (9/163) 2.4 5.8e-05 0.00056
GO:1901363 heterocyclic compound binding 19.02% (31/163) 1.06 6.4e-05 0.000615
GO:0043604 amide biosynthetic process 5.52% (9/163) 2.37 6.9e-05 0.000642
GO:0017076 purine nucleotide binding 17.79% (29/163) 1.1 7.1e-05 0.000656
GO:0036094 small molecule binding 19.02% (31/163) 1.05 7.5e-05 0.000683
GO:0032555 purine ribonucleotide binding 17.18% (28/163) 1.12 7.7e-05 0.000691
GO:0032553 ribonucleotide binding 17.18% (28/163) 1.1 9.6e-05 0.000848
GO:0071704 organic substance metabolic process 29.45% (48/163) 0.76 0.000104 0.000886
GO:0044271 cellular nitrogen compound biosynthetic process 7.98% (13/163) 1.8 0.000102 0.000888
GO:0005198 structural molecule activity 5.52% (9/163) 2.27 0.000118 0.000991
GO:0005634 nucleus 5.52% (9/163) 2.25 0.000127 0.001054
GO:1902494 catalytic complex 4.91% (8/163) 2.43 0.000133 0.001087
GO:0044877 protein-containing complex binding 3.07% (5/163) 3.32 0.000154 0.00122
GO:0043603 amide metabolic process 5.52% (9/163) 2.22 0.000153 0.001235
GO:0051128 regulation of cellular component organization 2.45% (4/163) 3.8 0.000199 0.001556
GO:0043168 anion binding 17.79% (29/163) 1.01 0.000219 0.001693
GO:0005488 binding 44.79% (73/163) 0.51 0.000229 0.001746
GO:0008152 metabolic process 30.06% (49/163) 0.69 0.000257 0.001937
GO:0097027 ubiquitin-protein transferase activator activity 1.23% (2/163) 6.13 0.000336 0.002314
GO:1903322 positive regulation of protein modification by small protein conjugation or removal 1.23% (2/163) 6.13 0.000336 0.002314
GO:1901875 positive regulation of post-translational protein modification 1.23% (2/163) 6.13 0.000336 0.002314
GO:1904668 positive regulation of ubiquitin protein ligase activity 1.23% (2/163) 6.13 0.000336 0.002314
GO:0031398 positive regulation of protein ubiquitination 1.23% (2/163) 6.13 0.000336 0.002314
GO:0051443 positive regulation of ubiquitin-protein transferase activity 1.23% (2/163) 6.13 0.000336 0.002314
GO:0055106 ubiquitin-protein transferase regulator activity 1.23% (2/163) 6.13 0.000336 0.002314
GO:0003682 chromatin binding 1.84% (3/163) 4.44 0.000357 0.002429
GO:0033043 regulation of organelle organization 1.84% (3/163) 4.13 0.00068 0.004577
GO:1903320 regulation of protein modification by small protein conjugation or removal 1.23% (2/163) 5.54 0.000798 0.005074
GO:0031396 regulation of protein ubiquitination 1.23% (2/163) 5.54 0.000798 0.005074
GO:1904666 regulation of ubiquitin protein ligase activity 1.23% (2/163) 5.54 0.000798 0.005074
GO:2001251 negative regulation of chromosome organization 1.23% (2/163) 5.54 0.000798 0.005074
GO:0051438 regulation of ubiquitin-protein transferase activity 1.23% (2/163) 5.54 0.000798 0.005074
GO:0044249 cellular biosynthetic process 9.2% (15/163) 1.36 0.00083 0.005218
GO:0043231 intracellular membrane-bounded organelle 5.52% (9/163) 1.84 0.000997 0.005941
GO:0043227 membrane-bounded organelle 5.52% (9/163) 1.84 0.000997 0.005941
GO:0043167 ion binding 23.93% (39/163) 0.72 0.001019 0.006008
GO:0004536 DNA nuclease activity 1.23% (2/163) 5.39 0.000995 0.006054
GO:1901873 regulation of post-translational protein modification 1.23% (2/163) 5.39 0.000995 0.006054
GO:0042575 DNA polymerase complex 1.23% (2/163) 5.39 0.000995 0.006054
GO:0008150 biological_process 44.17% (72/163) 0.45 0.001066 0.006156
GO:0097159 organic cyclic compound binding 28.22% (46/163) 0.64 0.001063 0.006204
GO:0010639 negative regulation of organelle organization 1.23% (2/163) 5.25 0.001212 0.006797
GO:0010997 anaphase-promoting complex binding 1.23% (2/163) 5.25 0.001212 0.006797
GO:0051129 negative regulation of cellular component organization 1.23% (2/163) 5.25 0.001212 0.006797
GO:0022402 cell cycle process 2.45% (4/163) 3.08 0.001327 0.007369
GO:0019773 proteasome core complex, alpha-subunit complex 1.23% (2/163) 5.13 0.00145 0.007899
GO:0033044 regulation of chromosome organization 1.23% (2/163) 5.13 0.00145 0.007899
GO:1901566 organonitrogen compound biosynthetic process 6.13% (10/163) 1.62 0.001685 0.009009
GO:0071840 cellular component organization or biogenesis 6.13% (10/163) 1.62 0.001685 0.009009
GO:0031401 positive regulation of protein modification process 1.23% (2/163) 5.01 0.001708 0.009047
GO:0051347 positive regulation of transferase activity 1.23% (2/163) 4.9 0.001987 0.010056
GO:0010948 negative regulation of cell cycle process 1.23% (2/163) 4.9 0.001987 0.010056
GO:0000075 cell cycle checkpoint signaling 1.23% (2/163) 4.9 0.001987 0.010056
GO:1901988 negative regulation of cell cycle phase transition 1.23% (2/163) 4.9 0.001987 0.010056
GO:1901576 organic substance biosynthetic process 9.2% (15/163) 1.23 0.001946 0.010214
GO:0050790 regulation of catalytic activity 1.84% (3/163) 3.49 0.002462 0.012355
GO:0016043 cellular component organization 5.52% (9/163) 1.64 0.002559 0.012726
GO:0003674 molecular_function 60.12% (98/163) 0.29 0.002798 0.013796
GO:1901987 regulation of cell cycle phase transition 1.23% (2/163) 4.54 0.003299 0.015856
GO:0051247 positive regulation of protein metabolic process 1.23% (2/163) 4.54 0.003299 0.015856
GO:0065009 regulation of molecular function 1.84% (3/163) 3.34 0.00329 0.016085
GO:0003676 nucleic acid binding 14.72% (24/163) 0.85 0.003542 0.016882
GO:0003677 DNA binding 9.2% (15/163) 1.14 0.003641 0.017214
GO:0045786 negative regulation of cell cycle 1.23% (2/163) 4.46 0.003675 0.017231
GO:0016779 nucleotidyltransferase activity 2.45% (4/163) 2.65 0.003875 0.018021
GO:0009058 biosynthetic process 9.2% (15/163) 1.11 0.00435 0.020067
GO:0017116 single-stranded DNA helicase activity 0.61% (1/163) 7.71 0.004776 0.02054
GO:0097506 deaminated base DNA N-glycosylase activity 0.61% (1/163) 7.71 0.004776 0.02054
GO:0004844 uracil DNA N-glycosylase activity 0.61% (1/163) 7.71 0.004776 0.02054
GO:1902292 cell cycle DNA replication initiation 0.61% (1/163) 7.71 0.004776 0.02054
GO:1902315 nuclear cell cycle DNA replication initiation 0.61% (1/163) 7.71 0.004776 0.02054
GO:1905347 endodeoxyribonuclease complex 0.61% (1/163) 7.71 0.004776 0.02054
GO:0048476 Holliday junction resolvase complex 0.61% (1/163) 7.71 0.004776 0.02054
GO:1902975 mitotic DNA replication initiation 0.61% (1/163) 7.71 0.004776 0.02054
GO:0033567 DNA replication, Okazaki fragment processing 0.61% (1/163) 7.71 0.004776 0.02054
GO:0110165 cellular anatomical entity 13.5% (22/163) 0.84 0.005668 0.024194
GO:0043085 positive regulation of catalytic activity 1.23% (2/163) 4.13 0.00584 0.024744
GO:0005839 proteasome core complex 1.23% (2/163) 4.07 0.006328 0.026614
GO:0004518 nuclease activity 2.45% (4/163) 2.4 0.007251 0.030275
GO:1903047 mitotic cell cycle process 1.23% (2/163) 3.9 0.007899 0.032504
GO:0044093 positive regulation of molecular function 1.23% (2/163) 3.9 0.007899 0.032504
GO:0090116 C-5 methylation of cytosine 0.61% (1/163) 6.71 0.009529 0.033647
GO:1905775 negative regulation of DNA helicase activity 0.61% (1/163) 6.71 0.009529 0.033647
GO:0009008 DNA-methyltransferase activity 0.61% (1/163) 6.71 0.009529 0.033647
GO:0031415 NatA complex 0.61% (1/163) 6.71 0.009529 0.033647
GO:0045144 meiotic sister chromatid segregation 0.61% (1/163) 6.71 0.009529 0.033647
GO:0003886 DNA (cytosine-5-)-methyltransferase activity 0.61% (1/163) 6.71 0.009529 0.033647
GO:0034086 maintenance of sister chromatid cohesion 0.61% (1/163) 6.71 0.009529 0.033647
GO:0034090 maintenance of meiotic sister chromatid cohesion 0.61% (1/163) 6.71 0.009529 0.033647
GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters 0.61% (1/163) 6.71 0.009529 0.033647
GO:0017108 5'-flap endonuclease activity 0.61% (1/163) 6.71 0.009529 0.033647
GO:0048256 flap endonuclease activity 0.61% (1/163) 6.71 0.009529 0.033647
GO:0032776 DNA methylation on cytosine 0.61% (1/163) 6.71 0.009529 0.033647
GO:2000694 regulation of phragmoplast microtubule organization 0.61% (1/163) 6.71 0.009529 0.033647
GO:0008622 epsilon DNA polymerase complex 0.61% (1/163) 6.71 0.009529 0.033647
GO:1905462 regulation of DNA duplex unwinding 0.61% (1/163) 6.71 0.009529 0.033647
GO:0042276 error-prone translesion synthesis 0.61% (1/163) 6.71 0.009529 0.033647
GO:0051095 regulation of helicase activity 0.61% (1/163) 6.71 0.009529 0.033647
GO:0051097 negative regulation of helicase activity 0.61% (1/163) 6.71 0.009529 0.033647
GO:0030896 checkpoint clamp complex 0.61% (1/163) 6.71 0.009529 0.033647
GO:0003896 DNA primase activity 0.61% (1/163) 6.71 0.009529 0.033647
GO:1905774 regulation of DNA helicase activity 0.61% (1/163) 6.71 0.009529 0.033647
GO:0032299 ribonuclease H2 complex 0.61% (1/163) 6.71 0.009529 0.033647
GO:1905463 negative regulation of DNA duplex unwinding 0.61% (1/163) 6.71 0.009529 0.033647
GO:0010564 regulation of cell cycle process 1.23% (2/163) 3.71 0.010236 0.03592
GO:0051338 regulation of transferase activity 1.23% (2/163) 3.67 0.010863 0.037886
GO:0061695 transferase complex, transferring phosphorus-containing groups 1.23% (2/163) 3.58 0.012165 0.042172
GO:0098813 nuclear chromosome segregation 0.61% (1/163) 6.13 0.01426 0.044091
GO:0019985 translesion synthesis 0.61% (1/163) 6.13 0.01426 0.044091
GO:0070402 NADPH binding 0.61% (1/163) 6.13 0.01426 0.044091
GO:0070297 regulation of phosphorelay signal transduction system 0.61% (1/163) 6.13 0.01426 0.044091
GO:0010104 regulation of ethylene-activated signaling pathway 0.61% (1/163) 6.13 0.01426 0.044091
GO:0000819 sister chromatid segregation 0.61% (1/163) 6.13 0.01426 0.044091
GO:0043138 3'-5' DNA helicase activity 0.61% (1/163) 6.13 0.01426 0.044091
GO:0005762 mitochondrial large ribosomal subunit 0.61% (1/163) 6.13 0.01426 0.044091
GO:0000315 organellar large ribosomal subunit 0.61% (1/163) 6.13 0.01426 0.044091
GO:0070298 negative regulation of phosphorelay signal transduction system 0.61% (1/163) 6.13 0.01426 0.044091
GO:0006301 postreplication repair 0.61% (1/163) 6.13 0.01426 0.044091
GO:0045132 meiotic chromosome segregation 0.61% (1/163) 6.13 0.01426 0.044091
GO:0016675 oxidoreductase activity, acting on a heme group of donors 0.61% (1/163) 6.13 0.01426 0.044091
GO:0070192 chromosome organization involved in meiotic cell cycle 0.61% (1/163) 6.13 0.01426 0.044091
GO:0035312 5'-3' DNA exonuclease activity 0.61% (1/163) 6.13 0.01426 0.044091
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 0.61% (1/163) 6.13 0.01426 0.044091
GO:1900034 regulation of cellular response to heat 0.61% (1/163) 6.13 0.01426 0.044091
GO:0004129 cytochrome-c oxidase activity 0.61% (1/163) 6.13 0.01426 0.044091
GO:0010105 negative regulation of ethylene-activated signaling pathway 0.61% (1/163) 6.13 0.01426 0.044091
GO:0048523 negative regulation of cellular process 2.45% (4/163) 2.13 0.013524 0.046602
GO:0031399 regulation of protein modification process 1.23% (2/163) 3.39 0.015701 0.048286
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (163) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms