Coexpression cluster: Cluster_143 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003735 structural constituent of ribosome 8.5% (13/153) 3.1 0.0 0.0
GO:0043043 peptide biosynthetic process 8.5% (13/153) 3.11 0.0 1e-06
GO:0009059 macromolecule biosynthetic process 11.11% (17/153) 2.59 0.0 1e-06
GO:0006518 peptide metabolic process 8.5% (13/153) 3.03 0.0 1e-06
GO:0005840 ribosome 8.5% (13/153) 3.23 0.0 1e-06
GO:0043604 amide biosynthetic process 8.5% (13/153) 2.99 0.0 1e-06
GO:0006412 translation 8.5% (13/153) 3.14 0.0 1e-06
GO:0044271 cellular nitrogen compound biosynthetic process 11.76% (18/153) 2.36 0.0 1e-06
GO:0005198 structural molecule activity 8.5% (13/153) 2.89 0.0 1e-06
GO:0005575 cellular_component 25.49% (39/153) 1.33 0.0 2e-06
GO:0043228 non-membrane-bounded organelle 8.5% (13/153) 2.84 0.0 2e-06
GO:0043232 intracellular non-membrane-bounded organelle 8.5% (13/153) 2.84 0.0 2e-06
GO:0043603 amide metabolic process 8.5% (13/153) 2.84 0.0 2e-06
GO:0034641 cellular nitrogen compound metabolic process 16.99% (26/153) 1.75 0.0 2e-06
GO:0044249 cellular biosynthetic process 13.07% (20/153) 1.86 1e-06 2.1e-05
GO:1901566 organonitrogen compound biosynthetic process 9.15% (14/153) 2.2 3e-06 7.1e-05
GO:1901576 organic substance biosynthetic process 13.07% (20/153) 1.74 2e-06 7.1e-05
GO:0032991 protein-containing complex 11.76% (18/153) 1.87 2e-06 7.3e-05
GO:0098799 outer mitochondrial membrane protein complex 1.96% (3/153) 6.58 3e-06 7.5e-05
GO:0005742 mitochondrial outer membrane translocase complex 1.96% (3/153) 6.58 3e-06 7.5e-05
GO:0098798 mitochondrial protein-containing complex 3.27% (5/153) 4.4 4e-06 9.6e-05
GO:0043229 intracellular organelle 10.46% (16/153) 1.94 5e-06 0.000101
GO:0043226 organelle 10.46% (16/153) 1.94 5e-06 0.000101
GO:0009058 biosynthetic process 13.07% (20/153) 1.61 9e-06 0.00018
GO:0006807 nitrogen compound metabolic process 26.14% (40/153) 0.99 1.3e-05 0.000251
GO:0043170 macromolecule metabolic process 23.53% (36/153) 1.01 2.9e-05 0.000548
GO:0072655 establishment of protein localization to mitochondrion 1.96% (3/153) 5.22 6.9e-05 0.001206
GO:0070585 protein localization to mitochondrion 1.96% (3/153) 5.22 6.9e-05 0.001206
GO:0044237 cellular metabolic process 23.53% (36/153) 0.94 8.2e-05 0.001394
GO:0008152 metabolic process 31.37% (48/153) 0.76 9.6e-05 0.001567
GO:0140513 nuclear protein-containing complex 4.58% (7/153) 2.64 0.000142 0.002258
GO:0098796 membrane protein complex 4.58% (7/153) 2.6 0.000173 0.002654
GO:0044238 primary metabolic process 27.45% (42/153) 0.77 0.000245 0.003651
GO:0009987 cellular process 31.37% (48/153) 0.69 0.000278 0.004027
GO:0045281 succinate dehydrogenase complex 1.31% (2/153) 6.22 0.000296 0.004161
GO:0019538 protein metabolic process 16.99% (26/153) 1.03 0.000369 0.005042
GO:0007006 mitochondrial membrane organization 1.31% (2/153) 5.63 0.000704 0.009116
GO:0090151 establishment of protein localization to mitochondrial membrane 1.31% (2/153) 5.63 0.000704 0.009116
GO:0006839 mitochondrial transport 1.96% (3/153) 4.03 0.000831 0.010484
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.96% (3/153) 3.93 0.001022 0.012576
GO:0031325 positive regulation of cellular metabolic process 2.61% (4/153) 3.17 0.00105 0.012605
GO:0110165 cellular anatomical entity 15.03% (23/153) 0.99 0.001167 0.013668
GO:0010604 positive regulation of macromolecule metabolic process 2.61% (4/153) 3.07 0.001353 0.014794
GO:0051173 positive regulation of nitrogen compound metabolic process 2.61% (4/153) 3.07 0.001353 0.014794
GO:0048522 positive regulation of cellular process 2.61% (4/153) 3.09 0.001307 0.014949
GO:0009893 positive regulation of metabolic process 2.61% (4/153) 3.06 0.001401 0.014982
GO:0003723 RNA binding 6.54% (10/153) 1.62 0.001665 0.016718
GO:0003712 transcription coregulator activity 1.96% (3/153) 3.66 0.001756 0.01694
GO:0097747 RNA polymerase activity 1.96% (3/153) 3.69 0.001662 0.017036
GO:0034062 5'-3' RNA polymerase activity 1.96% (3/153) 3.69 0.001662 0.017036
GO:1901564 organonitrogen compound metabolic process 18.3% (28/153) 0.84 0.001734 0.01706
GO:0008150 biological_process 43.79% (67/153) 0.44 0.002027 0.019174
GO:0006357 regulation of transcription by RNA polymerase II 2.61% (4/153) 2.86 0.002332 0.021648
GO:0071704 organic substance metabolic process 26.8% (41/153) 0.62 0.00241 0.021962
GO:0007005 mitochondrion organization 1.31% (2/153) 4.71 0.002598 0.022825
GO:0050145 nucleoside monophosphate kinase activity 1.31% (2/153) 4.71 0.002598 0.022825
GO:0072594 establishment of protein localization to organelle 1.96% (3/153) 3.3 0.003577 0.030877
GO:0007008 outer mitochondrial membrane organization 0.65% (1/153) 7.8 0.004483 0.031509
GO:0009860 pollen tube growth 0.65% (1/153) 7.8 0.004483 0.031509
GO:0009846 pollen germination 0.65% (1/153) 7.8 0.004483 0.031509
GO:0045040 protein insertion into mitochondrial outer membrane 0.65% (1/153) 7.8 0.004483 0.031509
GO:0009932 cell tip growth 0.65% (1/153) 7.8 0.004483 0.031509
GO:0051054 positive regulation of DNA metabolic process 0.65% (1/153) 7.8 0.004483 0.031509
GO:0009826 unidimensional cell growth 0.65% (1/153) 7.8 0.004483 0.031509
GO:0060560 developmental growth involved in morphogenesis 0.65% (1/153) 7.8 0.004483 0.031509
GO:0048588 developmental cell growth 0.65% (1/153) 7.8 0.004483 0.031509
GO:0031023 microtubule organizing center organization 0.65% (1/153) 7.8 0.004483 0.031509
GO:0045739 positive regulation of DNA repair 0.65% (1/153) 7.8 0.004483 0.031509
GO:0033365 protein localization to organelle 1.96% (3/153) 3.28 0.003728 0.031621
GO:0048518 positive regulation of biological process 2.61% (4/153) 2.66 0.003809 0.031765
GO:0061024 membrane organization 1.31% (2/153) 4.28 0.004749 0.032906
GO:0090079 translation regulator activity, nucleic acid binding 1.96% (3/153) 3.14 0.004889 0.03295
GO:0008135 translation factor activity, RNA binding 1.96% (3/153) 3.14 0.004889 0.03295
GO:0006413 translational initiation 1.31% (2/153) 4.16 0.005598 0.037219
GO:0045182 translation regulator activity 1.96% (3/153) 3.03 0.00604 0.039621
GO:0016070 RNA metabolic process 5.88% (9/153) 1.44 0.006298 0.04077
GO:0098803 respiratory chain complex 1.31% (2/153) 4.05 0.006511 0.041605
GO:0072657 protein localization to membrane 1.31% (2/153) 3.99 0.006992 0.043543
GO:0090150 establishment of protein localization to membrane 1.31% (2/153) 3.99 0.006992 0.043543
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 1.96% (3/153) 2.93 0.00734 0.045138
GO:0019205 nucleobase-containing compound kinase activity 1.31% (2/153) 3.89 0.007999 0.045762
GO:0051668 localization within membrane 1.31% (2/153) 3.89 0.007999 0.045762
GO:0016776 phosphotransferase activity, phosphate group as acceptor 1.31% (2/153) 3.89 0.007999 0.045762
GO:0000104 succinate dehydrogenase activity 0.65% (1/153) 6.8 0.008946 0.045848
GO:0048589 developmental growth 0.65% (1/153) 6.8 0.008946 0.045848
GO:0004452 isopentenyl-diphosphate delta-isomerase activity 0.65% (1/153) 6.8 0.008946 0.045848
GO:2000144 positive regulation of DNA-templated transcription initiation 0.65% (1/153) 6.8 0.008946 0.045848
GO:2000142 regulation of DNA-templated transcription initiation 0.65% (1/153) 6.8 0.008946 0.045848
GO:0006282 regulation of DNA repair 0.65% (1/153) 6.8 0.008946 0.045848
GO:0060261 positive regulation of transcription initiation by RNA polymerase II 0.65% (1/153) 6.8 0.008946 0.045848
GO:0070531 BRCA1-A complex 0.65% (1/153) 6.8 0.008946 0.045848
GO:0060260 regulation of transcription initiation by RNA polymerase II 0.65% (1/153) 6.8 0.008946 0.045848
GO:0070552 BRISC complex 0.65% (1/153) 6.8 0.008946 0.045848
GO:0016592 mediator complex 1.31% (2/153) 3.8 0.009068 0.045992
GO:0010557 positive regulation of macromolecule biosynthetic process 1.96% (3/153) 2.89 0.007807 0.046276
GO:0031328 positive regulation of cellular biosynthetic process 1.96% (3/153) 2.89 0.007807 0.046276
GO:0009891 positive regulation of biosynthetic process 1.96% (3/153) 2.89 0.007807 0.046276
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (153) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms