Coexpression cluster: Cluster_134 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003723 RNA binding 11.85% (16/135) 2.48 0.0 1.1e-05
GO:0003674 molecular_function 72.59% (98/135) 0.57 0.0 1.3e-05
GO:0005488 binding 53.33% (72/135) 0.76 0.0 2.3e-05
GO:0003676 nucleic acid binding 19.26% (26/135) 1.24 3.3e-05 0.005456
GO:0042770 signal transduction in response to DNA damage 1.48% (2/135) 6.98 9.3e-05 0.007613
GO:0000502 proteasome complex 1.48% (2/135) 6.98 9.3e-05 0.007613
GO:0000077 DNA damage checkpoint signaling 1.48% (2/135) 6.98 9.3e-05 0.007613
GO:0046483 heterocycle metabolic process 11.85% (16/135) 1.53 0.000142 0.0104
GO:0006725 cellular aromatic compound metabolic process 11.85% (16/135) 1.49 0.000188 0.011247
GO:0006139 nucleobase-containing compound metabolic process 11.11% (15/135) 1.57 0.000172 0.011321
GO:0097159 organic cyclic compound binding 31.85% (43/135) 0.81 8.8e-05 0.011509
GO:0031570 DNA integrity checkpoint signaling 1.48% (2/135) 6.4 0.000231 0.012623
GO:1901360 organic cyclic compound metabolic process 11.85% (16/135) 1.45 0.000258 0.013036
GO:0032991 protein-containing complex 9.63% (13/135) 1.58 0.000439 0.018029
GO:0034641 cellular nitrogen compound metabolic process 12.59% (17/135) 1.32 0.000484 0.018704
GO:0042176 regulation of protein catabolic process 1.48% (2/135) 5.98 0.000428 0.018753
GO:0005575 cellular_component 20.0% (27/135) 0.98 0.000423 0.019842
GO:1905369 endopeptidase complex 1.48% (2/135) 5.66 0.000685 0.02367
GO:0090304 nucleic acid metabolic process 8.89% (12/135) 1.59 0.000669 0.024434
GO:0009894 regulation of catabolic process 1.48% (2/135) 5.4 0.000999 0.03281
GO:1901988 negative regulation of cell cycle phase transition 1.48% (2/135) 5.17 0.00137 0.034618
GO:0000075 cell cycle checkpoint signaling 1.48% (2/135) 5.17 0.00137 0.034618
GO:0051170 import into nucleus 1.48% (2/135) 5.17 0.00137 0.034618
GO:0010948 negative regulation of cell cycle process 1.48% (2/135) 5.17 0.00137 0.034618
GO:0034504 protein localization to nucleus 1.48% (2/135) 5.28 0.001177 0.035159
GO:0006606 protein import into nucleus 1.48% (2/135) 5.28 0.001177 0.035159
GO:0006913 nucleocytoplasmic transport 2.22% (3/135) 3.73 0.001515 0.036865
GO:0051169 nuclear transport 2.22% (3/135) 3.68 0.001674 0.039269
GO:0001522 pseudouridine synthesis 1.48% (2/135) 4.4 0.004049 0.048366
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.22% (3/135) 3.23 0.004123 0.048376
GO:0016462 pyrophosphatase activity 5.19% (7/135) 1.81 0.004023 0.048952
GO:0006498 N-terminal protein lipidation 0.74% (1/135) 7.98 0.003956 0.049034
GO:0004379 glycylpeptide N-tetradecanoyltransferase activity 0.74% (1/135) 7.98 0.003956 0.049034
GO:0016632 oxidoreductase activity, acting on the CH-CH group of donors, cytochrome as acceptor 0.74% (1/135) 7.98 0.003956 0.049034
GO:0080113 regulation of seed growth 0.74% (1/135) 7.98 0.003956 0.049034
GO:0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity 0.74% (1/135) 7.98 0.003956 0.049034
GO:0006499 N-terminal protein myristoylation 0.74% (1/135) 7.98 0.003956 0.049034
GO:0044773 mitotic DNA damage checkpoint signaling 0.74% (1/135) 7.98 0.003956 0.049034
GO:0016633 galactonolactone dehydrogenase activity 0.74% (1/135) 7.98 0.003956 0.049034
GO:0018377 protein myristoylation 0.74% (1/135) 7.98 0.003956 0.049034
GO:0019107 myristoyltransferase activity 0.74% (1/135) 7.98 0.003956 0.049034
GO:0008987 quinolinate synthetase A activity 0.74% (1/135) 7.98 0.003956 0.049034
GO:0007095 mitotic G2 DNA damage checkpoint signaling 0.74% (1/135) 7.98 0.003956 0.049034
GO:0000493 box H/ACA snoRNP assembly 0.74% (1/135) 7.98 0.003956 0.049034
GO:0044281 small molecule metabolic process 6.67% (9/135) 1.53 0.004292 0.04947
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (135) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms