Coexpression cluster: Cluster_153 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0042625 ATPase-coupled ion transmembrane transporter activity 3.5% (5/143) 5.52 0.0 1.2e-05
GO:0046961 proton-transporting ATPase activity, rotational mechanism 3.5% (5/143) 5.52 0.0 1.2e-05
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism 3.5% (5/143) 5.52 0.0 1.2e-05
GO:1902600 proton transmembrane transport 3.5% (5/143) 4.58 2e-06 0.000274
GO:0034641 cellular nitrogen compound metabolic process 15.38% (22/143) 1.6 3e-06 0.000318
GO:0016859 cis-trans isomerase activity 3.5% (5/143) 4.36 5e-06 0.00033
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 3.5% (5/143) 4.39 4e-06 0.000353
GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity 3.5% (5/143) 4.22 8e-06 0.000471
GO:0000398 mRNA splicing, via spliceosome 3.5% (5/143) 4.05 1.3e-05 0.000673
GO:0006457 protein folding 4.2% (6/143) 3.51 1.6e-05 0.000723
GO:0005575 cellular_component 22.38% (32/143) 1.15 1.3e-05 0.000725
GO:0009987 cellular process 34.27% (49/143) 0.82 2e-05 0.000834
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.5% (5/143) 3.88 2.4e-05 0.00092
GO:0044271 cellular nitrogen compound biosynthetic process 9.09% (13/143) 1.99 2.6e-05 0.000944
GO:1901566 organonitrogen compound biosynthetic process 8.39% (12/143) 2.07 3.2e-05 0.000999
GO:0000375 RNA splicing, via transesterification reactions 3.5% (5/143) 3.81 3e-05 0.001007
GO:0015078 proton transmembrane transporter activity 3.5% (5/143) 3.73 4e-05 0.001171
GO:0022853 active monoatomic ion transmembrane transporter activity 3.5% (5/143) 3.65 5.2e-05 0.001434
GO:0008380 RNA splicing 3.5% (5/143) 3.62 5.7e-05 0.001501
GO:0032991 protein-containing complex 10.49% (15/143) 1.7 6.3e-05 0.001568
GO:0098796 membrane protein complex 4.9% (7/143) 2.69 0.000113 0.002708
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain 2.1% (3/143) 4.96 0.00012 0.002732
GO:0098655 monoatomic cation transmembrane transport 3.5% (5/143) 3.35 0.000138 0.003015
GO:0006397 mRNA processing 3.5% (5/143) 3.3 0.000162 0.003382
GO:0098662 inorganic cation transmembrane transport 3.5% (5/143) 3.27 0.000182 0.003501
GO:0034220 monoatomic ion transmembrane transport 3.5% (5/143) 3.28 0.000175 0.003505
GO:0044249 cellular biosynthetic process 10.49% (15/143) 1.55 0.000205 0.003809
GO:0098660 inorganic ion transmembrane transport 3.5% (5/143) 3.15 0.000261 0.004661
GO:0016853 isomerase activity 4.2% (6/143) 2.74 0.000304 0.005076
GO:0016070 RNA metabolic process 7.69% (11/143) 1.83 0.000297 0.005129
GO:0009059 macromolecule biosynthetic process 6.99% (10/143) 1.92 0.000344 0.005564
GO:0000413 protein peptidyl-prolyl isomerization 2.1% (3/143) 4.35 0.000427 0.006116
GO:0018208 peptidyl-proline modification 2.1% (3/143) 4.35 0.000427 0.006116
GO:0009058 biosynthetic process 11.19% (16/143) 1.39 0.000418 0.006341
GO:0016071 mRNA metabolic process 3.5% (5/143) 3.01 0.000412 0.006444
GO:1901576 organic substance biosynthetic process 10.49% (15/143) 1.42 0.000511 0.006735
GO:0006412 translation 4.9% (7/143) 2.34 0.000505 0.006833
GO:1901360 organic cyclic compound metabolic process 11.19% (16/143) 1.37 0.000495 0.006889
GO:0043043 peptide biosynthetic process 4.9% (7/143) 2.31 0.000571 0.007339
GO:0003735 structural constituent of ribosome 4.9% (7/143) 2.3 0.000592 0.007409
GO:0033179 proton-transporting V-type ATPase, V0 domain 1.4% (2/143) 5.73 0.000616 0.007523
GO:0006518 peptide metabolic process 4.9% (7/143) 2.23 0.000788 0.008401
GO:0042626 ATPase-coupled transmembrane transporter activity 3.5% (5/143) 2.81 0.000772 0.008404
GO:1990904 ribonucleoprotein complex 3.5% (5/143) 2.83 0.000732 0.008524
GO:0031970 organelle envelope lumen 1.4% (2/143) 5.58 0.000767 0.008544
GO:0005758 mitochondrial intermembrane space 1.4% (2/143) 5.58 0.000767 0.008544
GO:0006396 RNA processing 4.9% (7/143) 2.25 0.000726 0.008656
GO:0046483 heterocycle metabolic process 10.49% (15/143) 1.35 0.000841 0.008778
GO:0043604 amide biosynthetic process 4.9% (7/143) 2.2 0.000897 0.00917
GO:0006139 nucleobase-containing compound metabolic process 9.79% (14/143) 1.38 0.001006 0.01008
GO:0006725 cellular aromatic compound metabolic process 10.49% (15/143) 1.31 0.001076 0.010571
GO:0005198 structural molecule activity 4.9% (7/143) 2.1 0.001354 0.013045
GO:0015399 primary active transmembrane transporter activity 3.5% (5/143) 2.58 0.001553 0.014684
GO:0043603 amide metabolic process 4.9% (7/143) 2.04 0.001654 0.015343
GO:0005840 ribosome 4.2% (6/143) 2.22 0.001956 0.01782
GO:0044237 cellular metabolic process 20.98% (30/143) 0.77 0.002214 0.019811
GO:0070013 intracellular organelle lumen 1.4% (2/143) 4.73 0.002552 0.021674
GO:0043233 organelle lumen 1.4% (2/143) 4.73 0.002552 0.021674
GO:0031974 membrane-enclosed lumen 1.4% (2/143) 4.73 0.002552 0.021674
GO:0034654 nucleobase-containing compound biosynthetic process 4.2% (6/143) 2.12 0.002756 0.023012
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 1.4% (2/143) 4.65 0.002845 0.023366
GO:0022890 inorganic cation transmembrane transporter activity 3.5% (5/143) 2.34 0.00319 0.025781
GO:0090304 nucleic acid metabolic process 7.69% (11/143) 1.39 0.003479 0.027665
GO:0006812 monoatomic cation transport 3.5% (5/143) 2.3 0.003615 0.028296
GO:0090391 granum assembly 0.7% (1/143) 7.9 0.00419 0.030423
GO:0005688 U6 snRNP 0.7% (1/143) 7.9 0.00419 0.030423
GO:0051054 positive regulation of DNA metabolic process 0.7% (1/143) 7.9 0.00419 0.030423
GO:0031209 SCAR complex 0.7% (1/143) 7.9 0.00419 0.030423
GO:0045739 positive regulation of DNA repair 0.7% (1/143) 7.9 0.00419 0.030423
GO:0005681 spliceosomal complex 1.4% (2/143) 4.25 0.00491 0.03514
GO:0008324 monoatomic cation transmembrane transporter activity 3.5% (5/143) 2.14 0.005721 0.04037
GO:0043229 intracellular organelle 6.99% (10/143) 1.36 0.005906 0.040533
GO:0043226 organelle 6.99% (10/143) 1.36 0.005906 0.040533
GO:0006811 monoatomic ion transport 3.5% (5/143) 2.11 0.006266 0.041854
GO:0006807 nitrogen compound metabolic process 20.98% (30/143) 0.67 0.006229 0.042171
GO:0072522 purine-containing compound biosynthetic process 2.1% (3/143) 2.98 0.006687 0.044081
GO:0043232 intracellular non-membrane-bounded organelle 4.2% (6/143) 1.82 0.007373 0.047357
GO:0043228 non-membrane-bounded organelle 4.2% (6/143) 1.82 0.007373 0.047357
GO:0018193 peptidyl-amino acid modification 2.1% (3/143) 2.85 0.008427 0.048527
GO:0019438 aromatic compound biosynthetic process 4.2% (6/143) 1.78 0.00854 0.048621
GO:0004140 dephospho-CoA kinase activity 0.7% (1/143) 6.9 0.008363 0.048717
GO:0070552 BRISC complex 0.7% (1/143) 6.9 0.008363 0.048717
GO:0070531 BRCA1-A complex 0.7% (1/143) 6.9 0.008363 0.048717
GO:0005786 signal recognition particle, endoplasmic reticulum targeting 0.7% (1/143) 6.9 0.008363 0.048717
GO:1990610 acetolactate synthase regulator activity 0.7% (1/143) 6.9 0.008363 0.048717
GO:0006282 regulation of DNA repair 0.7% (1/143) 6.9 0.008363 0.048717
GO:0030942 endoplasmic reticulum signal peptide binding 0.7% (1/143) 6.9 0.008363 0.048717
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (143) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms