Coexpression cluster: Cluster_242 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity 3.7% (2/54) 9.3 2e-06 0.000394
GO:0008184 glycogen phosphorylase activity 3.7% (2/54) 9.3 2e-06 0.000394
GO:0003824 catalytic activity 51.85% (28/54) 1.08 1.3e-05 0.0014
GO:0044281 small molecule metabolic process 12.96% (7/54) 2.49 0.000238 0.019139
GO:0047632 agmatine deiminase activity 1.85% (1/54) 9.3 0.001582 0.020316
GO:0004668 protein-arginine deiminase activity 1.85% (1/54) 9.3 0.001582 0.020316
GO:0003862 3-isopropylmalate dehydrogenase activity 1.85% (1/54) 9.3 0.001582 0.020316
GO:0009446 putrescine biosynthetic process 1.85% (1/54) 9.3 0.001582 0.020316
GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity 1.85% (1/54) 9.3 0.001582 0.020316
GO:0046073 dTMP metabolic process 1.85% (1/54) 9.3 0.001582 0.020316
GO:0009445 putrescine metabolic process 1.85% (1/54) 9.3 0.001582 0.020316
GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds 1.85% (1/54) 9.3 0.001582 0.020316
GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances 1.85% (1/54) 9.3 0.001582 0.020316
GO:0004146 dihydrofolate reductase activity 1.85% (1/54) 9.3 0.001582 0.020316
GO:0004799 thymidylate synthase activity 1.85% (1/54) 9.3 0.001582 0.020316
GO:0006231 dTMP biosynthetic process 1.85% (1/54) 9.3 0.001582 0.020316
GO:0004334 fumarylacetoacetase activity 1.85% (1/54) 9.3 0.001582 0.020316
GO:0072528 pyrimidine-containing compound biosynthetic process 3.7% (2/54) 5.06 0.001665 0.020562
GO:0072527 pyrimidine-containing compound metabolic process 3.7% (2/54) 4.98 0.001844 0.021925
GO:0009058 biosynthetic process 14.81% (8/54) 1.8 0.00196 0.022469
GO:0008233 peptidase activity 9.26% (5/54) 2.47 0.002058 0.022779
GO:0009072 aromatic amino acid metabolic process 3.7% (2/54) 4.58 0.003215 0.024003
GO:0036374 glutathione hydrolase activity 1.85% (1/54) 8.3 0.003162 0.024167
GO:0046654 tetrahydrofolate biosynthetic process 1.85% (1/54) 8.3 0.003162 0.024167
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process 1.85% (1/54) 8.3 0.003162 0.024167
GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process 1.85% (1/54) 8.3 0.003162 0.024167
GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process 1.85% (1/54) 8.3 0.003162 0.024167
GO:0009162 deoxyribonucleoside monophosphate metabolic process 1.85% (1/54) 8.3 0.003162 0.024167
GO:0004029 aldehyde dehydrogenase (NAD+) activity 1.85% (1/54) 8.3 0.003162 0.024167
GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity 1.85% (1/54) 8.3 0.003162 0.024167
GO:0003856 3-dehydroquinate synthase activity 1.85% (1/54) 8.3 0.003162 0.024167
GO:0004350 glutamate-5-semialdehyde dehydrogenase activity 1.85% (1/54) 8.3 0.003162 0.024167
GO:0004349 glutamate 5-kinase activity 1.85% (1/54) 8.3 0.003162 0.024167
GO:0006807 nitrogen compound metabolic process 27.78% (15/54) 1.08 0.003366 0.024557
GO:0071704 organic substance metabolic process 37.04% (20/54) 1.09 0.000465 0.024894
GO:0009265 2'-deoxyribonucleotide biosynthetic process 1.85% (1/54) 7.72 0.004739 0.02494
GO:0019692 deoxyribose phosphate metabolic process 1.85% (1/54) 7.72 0.004739 0.02494
GO:0009098 leucine biosynthetic process 1.85% (1/54) 7.72 0.004739 0.02494
GO:0009219 pyrimidine deoxyribonucleotide metabolic process 1.85% (1/54) 7.72 0.004739 0.02494
GO:0009394 2'-deoxyribonucleotide metabolic process 1.85% (1/54) 7.72 0.004739 0.02494
GO:0046385 deoxyribose phosphate biosynthetic process 1.85% (1/54) 7.72 0.004739 0.02494
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 1.85% (1/54) 7.72 0.004739 0.02494
GO:0006561 proline biosynthetic process 1.85% (1/54) 7.72 0.004739 0.02494
GO:0006551 leucine metabolic process 1.85% (1/54) 7.72 0.004739 0.02494
GO:0016570 histone modification 3.7% (2/54) 4.47 0.003709 0.025883
GO:0044238 primary metabolic process 31.48% (17/54) 0.97 0.003666 0.026153
GO:0016053 organic acid biosynthetic process 5.56% (3/54) 3.19 0.004403 0.027715
GO:0046394 carboxylic acid biosynthetic process 5.56% (3/54) 3.19 0.004403 0.027715
GO:0050661 NADP binding 3.7% (2/54) 4.4 0.004101 0.028009
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 3.7% (2/54) 4.37 0.004236 0.028326
GO:0019438 aromatic compound biosynthetic process 7.41% (4/54) 2.6 0.004329 0.028358
GO:0044283 small molecule biosynthetic process 7.41% (4/54) 3.32 0.000707 0.028388
GO:0005737 cytoplasm 5.56% (3/54) 3.16 0.004643 0.028661
GO:0003674 molecular_function 72.22% (39/54) 0.56 0.000449 0.028797
GO:0006751 glutathione catabolic process 1.85% (1/54) 7.3 0.006314 0.030252
GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process 1.85% (1/54) 7.3 0.006314 0.030252
GO:0009129 pyrimidine nucleoside monophosphate metabolic process 1.85% (1/54) 7.3 0.006314 0.030252
GO:0000775 chromosome, centromeric region 1.85% (1/54) 7.3 0.006314 0.030252
GO:0043087 regulation of GTPase activity 1.85% (1/54) 7.3 0.006314 0.030252
GO:0006560 proline metabolic process 1.85% (1/54) 7.3 0.006314 0.030252
GO:0000278 mitotic cell cycle 1.85% (1/54) 6.98 0.007887 0.030501
GO:0006730 one-carbon metabolic process 1.85% (1/54) 6.98 0.007887 0.030501
GO:0034309 primary alcohol biosynthetic process 1.85% (1/54) 6.98 0.007887 0.030501
GO:0004345 glucose-6-phosphate dehydrogenase activity 1.85% (1/54) 6.98 0.007887 0.030501
GO:0009228 thiamine biosynthetic process 1.85% (1/54) 6.98 0.007887 0.030501
GO:0046524 sucrose-phosphate synthase activity 1.85% (1/54) 6.98 0.007887 0.030501
GO:0051287 NAD binding 3.7% (2/54) 4.04 0.006664 0.030559
GO:1901362 organic cyclic compound biosynthetic process 7.41% (4/54) 2.43 0.006477 0.030576
GO:0016758 hexosyltransferase activity 5.56% (3/54) 2.98 0.006617 0.030781
GO:0006520 amino acid metabolic process 7.41% (4/54) 3.23 0.000888 0.031668
GO:0044249 cellular biosynthetic process 12.96% (7/54) 1.85 0.003079 0.031884
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 3.7% (2/54) 4.63 0.002981 0.031898
GO:0030170 pyridoxal phosphate binding 3.7% (2/54) 3.93 0.007704 0.032115
GO:0070279 vitamin B6 binding 3.7% (2/54) 3.93 0.007704 0.032115
GO:0006082 organic acid metabolic process 7.41% (4/54) 2.37 0.007536 0.032256
GO:1901566 organonitrogen compound biosynthetic process 11.11% (6/54) 2.48 0.000707 0.032413
GO:1901360 organic cyclic compound metabolic process 12.96% (7/54) 1.58 0.008484 0.032421
GO:1901564 organonitrogen compound metabolic process 22.22% (12/54) 1.12 0.007503 0.032545
GO:0019752 carboxylic acid metabolic process 7.41% (4/54) 2.38 0.007326 0.032663
GO:0043436 oxoacid metabolic process 7.41% (4/54) 2.37 0.007483 0.032907
GO:0006725 cellular aromatic compound metabolic process 12.96% (7/54) 1.62 0.007321 0.033099
GO:1901576 organic substance biosynthetic process 14.81% (8/54) 1.92 0.001138 0.033204
GO:0046653 tetrahydrofolate metabolic process 1.85% (1/54) 6.72 0.009457 0.034107
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines 1.85% (1/54) 6.72 0.009457 0.034107
GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor 1.85% (1/54) 6.72 0.009457 0.034107
GO:0009263 deoxyribonucleotide biosynthetic process 1.85% (1/54) 6.72 0.009457 0.034107
GO:0008152 metabolic process 37.04% (20/54) 1.0 0.001095 0.035162
GO:1901607 alpha-amino acid biosynthetic process 3.7% (2/54) 3.78 0.009391 0.035464
GO:0098687 chromosomal region 1.85% (1/54) 6.5 0.011024 0.038051
GO:0009262 deoxyribonucleotide metabolic process 1.85% (1/54) 6.5 0.011024 0.038051
GO:0008242 omega peptidase activity 1.85% (1/54) 6.5 0.011024 0.038051
GO:0016491 oxidoreductase activity 12.96% (7/54) 1.51 0.010887 0.038831
GO:0016787 hydrolase activity 20.37% (11/54) 1.49 0.001455 0.038933
GO:0008150 biological_process 48.15% (26/54) 0.57 0.011409 0.03896
GO:0042724 thiamine-containing compound biosynthetic process 1.85% (1/54) 6.3 0.012589 0.040412
GO:0005986 sucrose biosynthetic process 1.85% (1/54) 6.3 0.012589 0.040412
GO:0006772 thiamine metabolic process 1.85% (1/54) 6.3 0.012589 0.040412
GO:0019202 amino acid kinase activity 1.85% (1/54) 6.3 0.012589 0.040412
GO:0042723 thiamine-containing compound metabolic process 1.85% (1/54) 6.3 0.012589 0.040412
GO:0008652 amino acid biosynthetic process 3.7% (2/54) 3.58 0.01231 0.041594
GO:0034308 primary alcohol metabolic process 1.85% (1/54) 6.13 0.014152 0.04368
GO:0016157 sucrose synthase activity 1.85% (1/54) 6.13 0.014152 0.04368
GO:0009396 folic acid-containing compound biosynthetic process 1.85% (1/54) 6.13 0.014152 0.04368
GO:0019842 vitamin binding 3.7% (2/54) 3.48 0.013899 0.044175
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 3.7% (2/54) 3.41 0.015329 0.046863
GO:0007049 cell cycle 1.85% (1/54) 5.98 0.015712 0.047581
GO:0016757 glycosyltransferase activity 7.41% (4/54) 2.04 0.016056 0.048169
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (54) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms