Coexpression cluster: Cluster_74 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032991 protein-containing complex 15.28% (22/144) 2.24 0.0 1e-06
GO:0005575 cellular_component 27.08% (39/144) 1.42 0.0 2e-06
GO:0009987 cellular process 38.89% (56/144) 1.0 0.0 1e-05
GO:0006139 nucleobase-containing compound metabolic process 14.58% (21/144) 1.96 0.0 1.7e-05
GO:0006725 cellular aromatic compound metabolic process 15.28% (22/144) 1.86 0.0 2.2e-05
GO:1901360 organic cyclic compound metabolic process 15.28% (22/144) 1.82 0.0 2.6e-05
GO:0034641 cellular nitrogen compound metabolic process 16.67% (24/144) 1.72 0.0 2.8e-05
GO:0046483 heterocycle metabolic process 14.58% (21/144) 1.83 0.0 3.9e-05
GO:0008150 biological_process 52.08% (75/144) 0.69 1e-06 5.5e-05
GO:0140535 intracellular protein-containing complex 4.86% (7/144) 3.35 6e-06 0.000339
GO:0016192 vesicle-mediated transport 5.56% (8/144) 3.06 6e-06 0.000343
GO:1902494 catalytic complex 6.25% (9/144) 2.78 7e-06 0.00037
GO:0090304 nucleic acid metabolic process 11.11% (16/144) 1.92 6e-06 0.000372
GO:0030674 protein-macromolecule adaptor activity 2.78% (4/144) 4.93 9e-06 0.000402
GO:0060090 molecular adaptor activity 2.78% (4/144) 4.89 1e-05 0.000427
GO:0006399 tRNA metabolic process 4.17% (6/144) 3.5 1.7e-05 0.000664
GO:0044238 primary metabolic process 29.86% (43/144) 0.89 2.5e-05 0.000931
GO:0034660 ncRNA metabolic process 4.86% (7/144) 3.0 3e-05 0.001061
GO:0006807 nitrogen compound metabolic process 25.69% (37/144) 0.96 4e-05 0.001342
GO:0006082 organic acid metabolic process 6.94% (10/144) 2.27 4.7e-05 0.001372
GO:0019752 carboxylic acid metabolic process 6.94% (10/144) 2.29 4.4e-05 0.00141
GO:0043436 oxoacid metabolic process 6.94% (10/144) 2.28 4.6e-05 0.001413
GO:0140513 nuclear protein-containing complex 4.86% (7/144) 2.73 9.8e-05 0.002726
GO:0000502 proteasome complex 1.39% (2/144) 6.89 0.000105 0.002826
GO:0044281 small molecule metabolic process 8.33% (12/144) 1.85 0.000139 0.003581
GO:0006520 amino acid metabolic process 4.86% (7/144) 2.62 0.000157 0.003879
GO:0005484 SNAP receptor activity 2.08% (3/144) 4.77 0.000178 0.004242
GO:1990234 transferase complex 3.47% (5/144) 3.2 0.000226 0.00518
GO:0044237 cellular metabolic process 22.92% (33/144) 0.9 0.000268 0.005746
GO:0030008 TRAPP complex 1.39% (2/144) 6.3 0.000262 0.005815
GO:0016070 RNA metabolic process 7.64% (11/144) 1.82 0.000315 0.00654
GO:0008152 metabolic process 30.56% (44/144) 0.72 0.000349 0.0068
GO:0071704 organic substance metabolic process 29.17% (42/144) 0.74 0.000339 0.006814
GO:0042176 regulation of protein catabolic process 1.39% (2/144) 5.89 0.000487 0.009207
GO:0045184 establishment of protein localization 4.17% (6/144) 2.58 0.00054 0.009924
GO:0008104 protein localization 4.17% (6/144) 2.54 0.000629 0.010366
GO:0070727 cellular macromolecule localization 4.17% (6/144) 2.54 0.000629 0.010366
GO:0033036 macromolecule localization 4.17% (6/144) 2.54 0.000629 0.010366
GO:0051641 cellular localization 4.86% (7/144) 2.3 0.000606 0.010823
GO:0006163 purine nucleotide metabolic process 3.47% (5/144) 2.8 0.000796 0.012189
GO:1905369 endopeptidase complex 1.39% (2/144) 5.57 0.000778 0.012203
GO:0140101 catalytic activity, acting on a tRNA 2.78% (4/144) 3.29 0.000777 0.01249
GO:0009894 regulation of catabolic process 1.39% (2/144) 5.3 0.001135 0.016217
GO:0051234 establishment of localization 10.42% (15/144) 1.31 0.001116 0.01631
GO:0072521 purine-containing compound metabolic process 3.47% (5/144) 2.7 0.001106 0.016545
GO:0051179 localization 10.42% (15/144) 1.29 0.001246 0.017412
GO:0009117 nucleotide metabolic process 3.47% (5/144) 2.6 0.001498 0.0205
GO:1901576 organic substance biosynthetic process 9.72% (14/144) 1.31 0.00162 0.020835
GO:0030131 clathrin adaptor complex 1.39% (2/144) 5.08 0.001556 0.020846
GO:0006753 nucleoside phosphate metabolic process 3.47% (5/144) 2.57 0.001602 0.021019
GO:0043038 amino acid activation 2.08% (3/144) 3.5 0.002427 0.026911
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.08% (3/144) 3.5 0.002427 0.026911
GO:0008033 tRNA processing 2.08% (3/144) 3.5 0.002427 0.026911
GO:0006418 tRNA aminoacylation for protein translation 2.08% (3/144) 3.5 0.002427 0.026911
GO:0043039 tRNA aminoacylation 2.08% (3/144) 3.5 0.002427 0.026911
GO:0004812 aminoacyl-tRNA ligase activity 2.08% (3/144) 3.5 0.002427 0.026911
GO:1901566 organonitrogen compound biosynthetic process 6.25% (9/144) 1.65 0.002492 0.027161
GO:0009150 purine ribonucleotide metabolic process 2.78% (4/144) 2.82 0.002554 0.027368
GO:0006810 transport 9.72% (14/144) 1.24 0.002617 0.02759
GO:0015031 protein transport 3.47% (5/144) 2.47 0.002199 0.02772
GO:0071705 nitrogen compound transport 4.17% (6/144) 2.12 0.002769 0.028714
GO:0043170 macromolecule metabolic process 20.14% (29/144) 0.79 0.002343 0.028967
GO:0010393 galacturonan metabolic process 0.69% (1/144) 7.89 0.004219 0.029813
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity 0.69% (1/144) 7.89 0.004219 0.029813
GO:0016748 succinyltransferase activity 0.69% (1/144) 7.89 0.004219 0.029813
GO:0004107 chorismate synthase activity 0.69% (1/144) 7.89 0.004219 0.029813
GO:0017169 CDP-alcohol phosphatidyltransferase activity 0.69% (1/144) 7.89 0.004219 0.029813
GO:0031307 obsolete integral component of mitochondrial outer membrane 0.69% (1/144) 7.89 0.004219 0.029813
GO:0070985 transcription factor TFIIK complex 0.69% (1/144) 7.89 0.004219 0.029813
GO:0004399 histidinol dehydrogenase activity 0.69% (1/144) 7.89 0.004219 0.029813
GO:0016751 S-succinyltransferase activity 0.69% (1/144) 7.89 0.004219 0.029813
GO:0045488 pectin metabolic process 0.69% (1/144) 7.89 0.004219 0.029813
GO:0008444 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity 0.69% (1/144) 7.89 0.004219 0.029813
GO:0004794 L-threonine ammonia-lyase activity 0.69% (1/144) 7.89 0.004219 0.029813
GO:0045252 oxoglutarate dehydrogenase complex 0.69% (1/144) 7.89 0.004219 0.029813
GO:0043625 delta DNA polymerase complex 0.69% (1/144) 7.89 0.004219 0.029813
GO:0010265 SCF complex assembly 0.69% (1/144) 7.89 0.004219 0.029813
GO:0045240 dihydrolipoyl dehydrogenase complex 0.69% (1/144) 7.89 0.004219 0.029813
GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity 0.69% (1/144) 7.89 0.004219 0.029813
GO:0006090 pyruvate metabolic process 2.08% (3/144) 3.39 0.003017 0.030309
GO:0009259 ribonucleotide metabolic process 2.78% (4/144) 2.75 0.003068 0.030345
GO:0034470 ncRNA processing 2.78% (4/144) 2.76 0.00299 0.030519
GO:0008237 metallopeptidase activity 2.08% (3/144) 3.19 0.004441 0.030707
GO:0140098 catalytic activity, acting on RNA 4.17% (6/144) 1.98 0.004417 0.03087
GO:0044283 small molecule biosynthetic process 3.47% (5/144) 2.22 0.004566 0.031233
GO:0019637 organophosphate metabolic process 4.17% (6/144) 1.96 0.004657 0.031521
GO:0019693 ribose phosphate metabolic process 2.78% (4/144) 2.71 0.003391 0.033034
GO:0005839 proteasome core complex 1.39% (2/144) 4.24 0.004977 0.033333
GO:0009058 biosynthetic process 9.72% (14/144) 1.19 0.00353 0.033379
GO:0030119 AP-type membrane coat adaptor complex 1.39% (2/144) 4.5 0.003522 0.033804
GO:1905368 peptidase complex 1.39% (2/144) 4.43 0.003864 0.034507
GO:0051649 establishment of localization in cell 3.47% (5/144) 2.27 0.003923 0.034552
GO:0006396 RNA processing 4.17% (6/144) 2.02 0.003856 0.034924
GO:0006886 intracellular protein transport 2.78% (4/144) 2.66 0.003826 0.035147
GO:0055086 nucleobase-containing small molecule metabolic process 3.47% (5/144) 2.26 0.00406 0.035275
GO:0046907 intracellular transport 3.47% (5/144) 2.29 0.003789 0.03531
GO:0110165 cellular anatomical entity 13.89% (20/144) 0.88 0.005901 0.039114
GO:0006259 DNA metabolic process 3.47% (5/144) 2.11 0.006259 0.040243
GO:0009144 purine nucleoside triphosphate metabolic process 2.08% (3/144) 3.01 0.006214 0.040357
GO:0009205 purine ribonucleoside triphosphate metabolic process 2.08% (3/144) 3.01 0.006214 0.040357
GO:0019205 nucleobase-containing compound kinase activity 1.39% (2/144) 3.98 0.007117 0.044868
GO:0016776 phosphotransferase activity, phosphate group as acceptor 1.39% (2/144) 3.98 0.007117 0.044868
GO:0031261 DNA replication preinitiation complex 0.69% (1/144) 6.89 0.008421 0.045122
GO:0006549 isoleucine metabolic process 0.69% (1/144) 6.89 0.008421 0.045122
GO:0004385 guanylate kinase activity 0.69% (1/144) 6.89 0.008421 0.045122
GO:0000811 GINS complex 0.69% (1/144) 6.89 0.008421 0.045122
GO:0080132 fatty acid alpha-hydroxylase activity 0.69% (1/144) 6.89 0.008421 0.045122
GO:0045239 tricarboxylic acid cycle enzyme complex 0.69% (1/144) 6.89 0.008421 0.045122
GO:0030942 endoplasmic reticulum signal peptide binding 0.69% (1/144) 6.89 0.008421 0.045122
GO:0006422 aspartyl-tRNA aminoacylation 0.69% (1/144) 6.89 0.008421 0.045122
GO:0005372 water transmembrane transporter activity 0.69% (1/144) 6.89 0.008421 0.045122
GO:0036080 purine nucleotide-sugar transmembrane transporter activity 0.69% (1/144) 6.89 0.008421 0.045122
GO:0015250 water channel activity 0.69% (1/144) 6.89 0.008421 0.045122
GO:0004347 glucose-6-phosphate isomerase activity 0.69% (1/144) 6.89 0.008421 0.045122
GO:0005786 signal recognition particle, endoplasmic reticulum targeting 0.69% (1/144) 6.89 0.008421 0.045122
GO:0009097 isoleucine biosynthetic process 0.69% (1/144) 6.89 0.008421 0.045122
GO:0004815 aspartate-tRNA ligase activity 0.69% (1/144) 6.89 0.008421 0.045122
GO:0005457 GDP-fucose transmembrane transporter activity 0.69% (1/144) 6.89 0.008421 0.045122
GO:0009199 ribonucleoside triphosphate metabolic process 2.08% (3/144) 2.93 0.007236 0.045175
GO:0016860 intramolecular oxidoreductase activity 1.39% (2/144) 3.8 0.009079 0.048244
GO:0034655 nucleobase-containing compound catabolic process 2.08% (3/144) 2.8 0.009316 0.049099
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (144) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms