Coexpression cluster: Cluster_186 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005978 glycogen biosynthetic process 5.26% (3/57) 7.49 1e-06 6.9e-05
GO:0005977 glycogen metabolic process 5.26% (3/57) 7.49 1e-06 6.9e-05
GO:0006112 energy reserve metabolic process 5.26% (3/57) 7.49 1e-06 6.9e-05
GO:0015980 energy derivation by oxidation of organic compounds 5.26% (3/57) 6.06 1.3e-05 0.001243
GO:0003844 1,4-alpha-glucan branching enzyme activity 3.51% (2/57) 8.23 1.6e-05 0.001299
GO:0009987 cellular process 43.86% (25/57) 1.18 2.2e-05 0.001431
GO:0009250 glucan biosynthetic process 5.26% (3/57) 4.88 0.000148 0.008395
GO:0043086 negative regulation of catalytic activity 3.51% (2/57) 6.53 0.000211 0.009295
GO:0000271 polysaccharide biosynthetic process 5.26% (3/57) 4.72 0.000205 0.010144
GO:0044092 negative regulation of molecular function 3.51% (2/57) 6.32 0.000284 0.010215
GO:0005488 binding 54.39% (31/57) 0.79 0.000269 0.010669
GO:0003674 molecular_function 71.93% (41/57) 0.55 0.000371 0.011292
GO:0044237 cellular metabolic process 29.82% (17/57) 1.28 0.000343 0.011326
GO:0044042 glucan metabolic process 5.26% (3/57) 4.21 0.000583 0.016479
GO:0016051 carbohydrate biosynthetic process 5.26% (3/57) 4.07 0.000775 0.020462
GO:0005976 polysaccharide metabolic process 5.26% (3/57) 3.85 0.001215 0.028296
GO:0006259 DNA metabolic process 7.02% (4/57) 3.13 0.001149 0.028445
GO:1901265 nucleoside phosphate binding 21.05% (12/57) 1.26 0.003431 0.028904
GO:0000166 nucleotide binding 21.05% (12/57) 1.26 0.003431 0.028904
GO:0046107 uracil biosynthetic process 1.75% (1/57) 8.23 0.003338 0.02937
GO:0006223 uracil salvage 1.75% (1/57) 8.23 0.003338 0.02937
GO:0043408 regulation of MAPK cascade 1.75% (1/57) 8.23 0.003338 0.02937
GO:0004845 uracil phosphoribosyltransferase activity 1.75% (1/57) 8.23 0.003338 0.02937
GO:0043405 regulation of MAP kinase activity 1.75% (1/57) 8.23 0.003338 0.02937
GO:0043409 negative regulation of MAPK cascade 1.75% (1/57) 8.23 0.003338 0.02937
GO:0033549 MAP kinase phosphatase activity 1.75% (1/57) 8.23 0.003338 0.02937
GO:0008655 pyrimidine-containing compound salvage 1.75% (1/57) 8.23 0.003338 0.02937
GO:0042276 error-prone translesion synthesis 1.75% (1/57) 8.23 0.003338 0.02937
GO:1905775 negative regulation of DNA helicase activity 1.75% (1/57) 8.23 0.003338 0.02937
GO:0051095 regulation of helicase activity 1.75% (1/57) 8.23 0.003338 0.02937
GO:0043407 negative regulation of MAP kinase activity 1.75% (1/57) 8.23 0.003338 0.02937
GO:0051097 negative regulation of helicase activity 1.75% (1/57) 8.23 0.003338 0.02937
GO:0043100 pyrimidine nucleobase salvage 1.75% (1/57) 8.23 0.003338 0.02937
GO:1905462 regulation of DNA duplex unwinding 1.75% (1/57) 8.23 0.003338 0.02937
GO:1905463 negative regulation of DNA duplex unwinding 1.75% (1/57) 8.23 0.003338 0.02937
GO:1905774 regulation of DNA helicase activity 1.75% (1/57) 8.23 0.003338 0.02937
GO:0043168 anion binding 21.05% (12/57) 1.25 0.003672 0.030291
GO:0051377 mannose-ethanolamine phosphotransferase activity 1.75% (1/57) 7.64 0.005002 0.030475
GO:0005262 calcium channel activity 1.75% (1/57) 7.64 0.005002 0.030475
GO:0008352 katanin complex 1.75% (1/57) 7.64 0.005002 0.030475
GO:0043047 single-stranded telomeric DNA binding 1.75% (1/57) 7.64 0.005002 0.030475
GO:0019860 uracil metabolic process 1.75% (1/57) 7.64 0.005002 0.030475
GO:0000781 chromosome, telomeric region 1.75% (1/57) 7.64 0.005002 0.030475
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity 1.75% (1/57) 7.64 0.005002 0.030475
GO:0098847 sequence-specific single stranded DNA binding 1.75% (1/57) 7.64 0.005002 0.030475
GO:0006301 postreplication repair 1.75% (1/57) 7.64 0.005002 0.030475
GO:0019985 translesion synthesis 1.75% (1/57) 7.64 0.005002 0.030475
GO:1901702 salt transmembrane transporter activity 5.26% (3/57) 3.65 0.001786 0.032147
GO:0050790 regulation of catalytic activity 3.51% (2/57) 4.42 0.003983 0.032189
GO:0097367 carbohydrate derivative binding 19.3% (11/57) 1.26 0.005368 0.03221
GO:0044249 cellular biosynthetic process 12.28% (7/57) 1.77 0.00419 0.033183
GO:0097159 organic cyclic compound binding 35.09% (20/57) 0.95 0.001776 0.033484
GO:0044238 primary metabolic process 29.82% (17/57) 0.89 0.006737 0.03377
GO:1901576 organic substance biosynthetic process 12.28% (7/57) 1.65 0.006674 0.033882
GO:0046488 phosphatidylinositol metabolic process 3.51% (2/57) 4.02 0.006853 0.033922
GO:0035639 purine ribonucleoside triphosphate binding 19.3% (11/57) 1.47 0.00173 0.03426
GO:0052866 phosphatidylinositol phosphate phosphatase activity 1.75% (1/57) 7.23 0.006664 0.034273
GO:0003997 acyl-CoA oxidase activity 1.75% (1/57) 7.23 0.006664 0.034273
GO:0034593 phosphatidylinositol bisphosphate phosphatase activity 1.75% (1/57) 7.23 0.006664 0.034273
GO:0043462 regulation of ATP-dependent activity 1.75% (1/57) 7.23 0.006664 0.034273
GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity 1.75% (1/57) 7.23 0.006664 0.034273
GO:0106018 phosphatidylinositol-3,5-bisphosphate phosphatase activity 1.75% (1/57) 7.23 0.006664 0.034273
GO:0032780 negative regulation of ATP-dependent activity 1.75% (1/57) 7.23 0.006664 0.034273
GO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity 1.75% (1/57) 7.23 0.006664 0.034273
GO:0003774 cytoskeletal motor activity 3.51% (2/57) 4.14 0.005817 0.03438
GO:0005245 voltage-gated calcium channel activity 1.75% (1/57) 9.23 0.00167 0.034809
GO:0006285 base-excision repair, AP site formation 1.75% (1/57) 9.23 0.00167 0.034809
GO:0032555 purine ribonucleotide binding 19.3% (11/57) 1.29 0.004526 0.035141
GO:1901363 heterocyclic compound binding 21.05% (12/57) 1.21 0.004657 0.035464
GO:0006996 organelle organization 5.26% (3/57) 2.93 0.007257 0.035481
GO:0043167 ion binding 28.07% (16/57) 0.95 0.006128 0.035685
GO:0032559 adenyl ribonucleotide binding 17.54% (10/57) 1.27 0.007411 0.03579
GO:0032553 ribonucleotide binding 19.3% (11/57) 1.27 0.004987 0.035908
GO:0065009 regulation of molecular function 3.51% (2/57) 4.27 0.00486 0.03631
GO:0036094 small molecule binding 21.05% (12/57) 1.2 0.004978 0.036507
GO:0030258 lipid modification 3.51% (2/57) 4.87 0.002155 0.037106
GO:0017076 purine nucleotide binding 19.3% (11/57) 1.22 0.006483 0.037205
GO:0051013 microtubule severing 1.75% (1/57) 6.9 0.008323 0.039239
GO:1902532 negative regulation of intracellular signal transduction 1.75% (1/57) 6.9 0.008323 0.039239
GO:0016791 phosphatase activity 5.26% (3/57) 2.85 0.008493 0.039567
GO:0022836 gated channel activity 3.51% (2/57) 3.83 0.008751 0.039831
GO:0006091 generation of precursor metabolites and energy 5.26% (3/57) 3.5 0.002414 0.039837
GO:0005215 transporter activity 10.53% (6/57) 1.75 0.008719 0.040149
GO:0016311 dephosphorylation 3.51% (2/57) 3.82 0.008952 0.040285
GO:0006885 regulation of pH 1.75% (1/57) 6.64 0.00998 0.042042
GO:0000731 DNA synthesis involved in DNA repair 1.75% (1/57) 6.64 0.00998 0.042042
GO:0008878 glucose-1-phosphate adenylyltransferase activity 1.75% (1/57) 6.64 0.00998 0.042042
GO:0015081 sodium ion transmembrane transporter activity 1.75% (1/57) 6.64 0.00998 0.042042
GO:0015385 sodium:proton antiporter activity 1.75% (1/57) 6.64 0.00998 0.042042
GO:0003677 DNA binding 12.28% (7/57) 1.55 0.009458 0.042083
GO:0009058 biosynthetic process 12.28% (7/57) 1.52 0.010455 0.043125
GO:0030554 adenyl nucleotide binding 17.54% (10/57) 1.2 0.01043 0.043478
GO:0098687 chromosomal region 1.75% (1/57) 6.42 0.011633 0.044297
GO:0001933 negative regulation of protein phosphorylation 1.75% (1/57) 6.42 0.011633 0.044297
GO:0006469 negative regulation of protein kinase activity 1.75% (1/57) 6.42 0.011633 0.044297
GO:0071901 negative regulation of protein serine/threonine kinase activity 1.75% (1/57) 6.42 0.011633 0.044297
GO:0006814 sodium ion transport 1.75% (1/57) 6.42 0.011633 0.044297
GO:0033673 negative regulation of kinase activity 1.75% (1/57) 6.42 0.011633 0.044297
GO:0042326 negative regulation of phosphorylation 1.75% (1/57) 6.42 0.011633 0.044297
GO:0044255 cellular lipid metabolic process 7.02% (4/57) 2.72 0.00319 0.045118
GO:0005524 ATP binding 17.54% (10/57) 1.47 0.002858 0.045273
GO:0006811 monoatomic ion transport 5.26% (3/57) 2.7 0.011099 0.045309
GO:0006650 glycerophospholipid metabolic process 3.51% (2/57) 3.58 0.012216 0.045638
GO:0008017 microtubule binding 3.51% (2/57) 3.58 0.012216 0.045638
GO:0045936 negative regulation of phosphate metabolic process 1.75% (1/57) 6.23 0.013285 0.046555
GO:0042555 MCM complex 1.75% (1/57) 6.23 0.013285 0.046555
GO:0010563 negative regulation of phosphorus metabolic process 1.75% (1/57) 6.23 0.013285 0.046555
GO:0005244 voltage-gated monoatomic ion channel activity 3.51% (2/57) 4.58 0.003189 0.046768
GO:0022832 voltage-gated channel activity 3.51% (2/57) 4.58 0.003189 0.046768
GO:0042578 phosphoric ester hydrolase activity 5.26% (3/57) 2.62 0.013026 0.046892
GO:0008150 biological_process 47.37% (27/57) 0.55 0.013001 0.047234
GO:2001251 negative regulation of chromosome organization 1.75% (1/57) 6.06 0.014933 0.047308
GO:0000723 telomere maintenance 1.75% (1/57) 6.06 0.014933 0.047308
GO:0009968 negative regulation of signal transduction 1.75% (1/57) 6.06 0.014933 0.047308
GO:0032200 telomere organization 1.75% (1/57) 6.06 0.014933 0.047308
GO:0010648 negative regulation of cell communication 1.75% (1/57) 6.06 0.014933 0.047308
GO:0023057 negative regulation of signaling 1.75% (1/57) 6.06 0.014933 0.047308
GO:0071897 DNA biosynthetic process 1.75% (1/57) 6.06 0.014933 0.047308
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 1.75% (1/57) 6.06 0.014933 0.047308
GO:0015318 inorganic molecular entity transmembrane transporter activity 5.26% (3/57) 2.62 0.012907 0.047326
GO:0043170 macromolecule metabolic process 22.81% (13/57) 0.96 0.012866 0.047618
GO:0046486 glycerolipid metabolic process 3.51% (2/57) 3.48 0.013892 0.047836
GO:0055085 transmembrane transport 8.77% (5/57) 1.81 0.013839 0.048071
GO:0070566 adenylyltransferase activity 1.75% (1/57) 5.9 0.016578 0.048993
GO:0006821 chloride transport 1.75% (1/57) 5.9 0.016578 0.048993
GO:0005247 voltage-gated chloride channel activity 1.75% (1/57) 5.9 0.016578 0.048993
GO:0051348 negative regulation of transferase activity 1.75% (1/57) 5.9 0.016578 0.048993
GO:0034440 lipid oxidation 1.75% (1/57) 5.9 0.016578 0.048993
GO:0006635 fatty acid beta-oxidation 1.75% (1/57) 5.9 0.016578 0.048993
GO:0019395 fatty acid oxidation 1.75% (1/57) 5.9 0.016578 0.048993
GO:0042162 telomeric DNA binding 1.75% (1/57) 5.9 0.016578 0.048993
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (57) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms