Coexpression cluster: Cluster_185 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032991 protein-containing complex 18.37% (9/49) 2.51 2.3e-05 0.006712
GO:0005575 cellular_component 30.61% (15/49) 1.6 6.4e-05 0.009145
GO:0030532 small nuclear ribonucleoprotein complex 4.08% (2/49) 6.54 0.00021 0.015033
GO:0120114 Sm-like protein family complex 4.08% (2/49) 6.54 0.00021 0.015033
GO:0071840 cellular component organization or biogenesis 12.24% (6/49) 2.62 0.000416 0.019912
GO:0008380 RNA splicing 6.12% (3/49) 4.43 0.000373 0.021405
GO:0034641 cellular nitrogen compound metabolic process 18.37% (9/49) 1.86 0.000698 0.02505
GO:0022613 ribonucleoprotein complex biogenesis 4.08% (2/49) 5.74 0.000642 0.026321
GO:0007008 outer mitochondrial membrane organization 2.04% (1/49) 9.44 0.001436 0.037459
GO:0045040 protein insertion into mitochondrial outer membrane 2.04% (1/49) 9.44 0.001436 0.037459
GO:0071256 translocon complex 2.04% (1/49) 8.44 0.002869 0.041176
GO:0005784 Sec61 translocon complex 2.04% (1/49) 8.44 0.002869 0.041176
GO:0031390 Ctf18 RFC-like complex 2.04% (1/49) 8.44 0.002869 0.041176
GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity 2.04% (1/49) 8.44 0.002869 0.041176
GO:0009987 cellular process 38.78% (19/49) 1.0 0.001306 0.041659
GO:0090304 nucleic acid metabolic process 12.24% (6/49) 2.06 0.003051 0.041703
GO:0003743 translation initiation factor activity 4.08% (2/49) 4.95 0.001922 0.042428
GO:1990904 ribonucleoprotein complex 6.12% (3/49) 3.64 0.001828 0.043719
GO:0019899 enzyme binding 4.08% (2/49) 4.54 0.003389 0.044214
GO:0006139 nucleobase-containing compound metabolic process 14.29% (7/49) 1.93 0.002225 0.045615
GO:0046483 heterocycle metabolic process 14.29% (7/49) 1.8 0.003721 0.046427
GO:0045182 translation regulator activity 4.08% (2/49) 4.09 0.006233 0.048345
GO:0042274 ribosomal small subunit biogenesis 2.04% (1/49) 7.44 0.005731 0.048375
GO:0000776 kinetochore 2.04% (1/49) 7.44 0.005731 0.048375
GO:0032981 mitochondrial respiratory chain complex I assembly 2.04% (1/49) 7.44 0.005731 0.048375
GO:0010257 NADH dehydrogenase complex assembly 2.04% (1/49) 7.44 0.005731 0.048375
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 4.08% (2/49) 4.1 0.006086 0.048521
GO:0044085 cellular component biogenesis 4.08% (2/49) 4.12 0.005941 0.048719
GO:0043232 intracellular non-membrane-bounded organelle 8.16% (4/49) 2.78 0.002716 0.048727
GO:0043228 non-membrane-bounded organelle 8.16% (4/49) 2.78 0.002716 0.048727
GO:0016070 RNA metabolic process 10.2% (5/49) 2.24 0.004078 0.048769
GO:0006725 cellular aromatic compound metabolic process 14.29% (7/49) 1.76 0.004257 0.048873
GO:0009927 histidine phosphotransfer kinase activity 2.04% (1/49) 7.12 0.007158 0.048916
GO:0043424 protein histidine kinase binding 2.04% (1/49) 7.12 0.007158 0.048916
GO:0031262 Ndc80 complex 2.04% (1/49) 7.12 0.007158 0.048916
GO:0004462 lactoylglutathione lyase activity 2.04% (1/49) 7.12 0.007158 0.048916
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (49) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms