Coexpression cluster: Cluster_146 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032555 purine ribonucleotide binding 19.81% (42/212) 1.33 0.0 5e-06
GO:0032553 ribonucleotide binding 19.81% (42/212) 1.31 0.0 6e-06
GO:1901363 heterocyclic compound binding 21.23% (45/212) 1.22 0.0 6e-06
GO:0017076 purine nucleotide binding 19.81% (42/212) 1.26 0.0 6e-06
GO:0030554 adenyl nucleotide binding 18.87% (40/212) 1.31 0.0 6e-06
GO:0000166 nucleotide binding 20.75% (44/212) 1.24 0.0 6e-06
GO:1901265 nucleoside phosphate binding 20.75% (44/212) 1.24 0.0 6e-06
GO:0036094 small molecule binding 21.23% (45/212) 1.21 0.0 6e-06
GO:0032559 adenyl ribonucleotide binding 18.87% (40/212) 1.38 0.0 7e-06
GO:0005488 binding 48.58% (103/212) 0.63 0.0 7e-06
GO:0016772 transferase activity, transferring phosphorus-containing groups 14.15% (30/212) 1.54 0.0 8e-06
GO:0035639 purine ribonucleoside triphosphate binding 17.45% (37/212) 1.32 0.0 9e-06
GO:0005524 ATP binding 16.51% (35/212) 1.38 0.0 9e-06
GO:0043168 anion binding 20.28% (43/212) 1.2 0.0 9e-06
GO:0097367 carbohydrate derivative binding 20.28% (43/212) 1.33 0.0 1e-05
GO:0043167 ion binding 27.36% (58/212) 0.91 1e-06 3.5e-05
GO:0003674 molecular_function 65.09% (138/212) 0.41 2e-06 5.7e-05
GO:0044238 primary metabolic process 28.77% (61/212) 0.84 2e-06 7.5e-05
GO:0006807 nitrogen compound metabolic process 25.0% (53/212) 0.92 2e-06 7.6e-05
GO:0043170 macromolecule metabolic process 22.64% (48/212) 0.95 5e-06 0.000143
GO:0044237 cellular metabolic process 23.11% (49/212) 0.91 8e-06 0.000234
GO:0016773 phosphotransferase activity, alcohol group as acceptor 11.32% (24/212) 1.44 1e-05 0.000268
GO:0016740 transferase activity 19.81% (42/212) 1.0 1e-05 0.000275
GO:0071704 organic substance metabolic process 29.25% (62/212) 0.75 1.4e-05 0.00036
GO:0009987 cellular process 31.6% (67/212) 0.7 1.5e-05 0.000372
GO:0097159 organic cyclic compound binding 29.72% (63/212) 0.71 2.8e-05 0.000644
GO:0003824 catalytic activity 36.79% (78/212) 0.59 4e-05 0.000895
GO:0140640 catalytic activity, acting on a nucleic acid 6.13% (13/212) 1.93 4.3e-05 0.000935
GO:0008150 biological_process 45.28% (96/212) 0.48 5.8e-05 0.001089
GO:0016310 phosphorylation 9.91% (21/212) 1.4 5.6e-05 0.001094
GO:0008152 metabolic process 29.72% (63/212) 0.68 5.5e-05 0.001107
GO:0016301 kinase activity 10.85% (23/212) 1.32 5.4e-05 0.001127
GO:0004672 protein kinase activity 9.91% (21/212) 1.38 6.6e-05 0.001211
GO:0006796 phosphate-containing compound metabolic process 11.79% (25/212) 1.23 6.9e-05 0.00123
GO:0006793 phosphorus metabolic process 11.79% (25/212) 1.23 7.3e-05 0.001251
GO:0006468 protein phosphorylation 9.43% (20/212) 1.35 0.000136 0.00229
GO:0005515 protein binding 20.28% (43/212) 0.8 0.0002 0.003102
GO:0016779 nucleotidyltransferase activity 2.83% (6/212) 2.86 0.000191 0.003111
GO:0090304 nucleic acid metabolic process 8.02% (17/212) 1.45 0.000198 0.003143
GO:0140097 catalytic activity, acting on DNA 2.83% (6/212) 2.73 0.000315 0.004759
GO:0036211 protein modification process 11.79% (25/212) 1.09 0.000324 0.004768
GO:1901360 organic cyclic compound metabolic process 9.91% (21/212) 1.19 0.00039 0.005478
GO:0031123 RNA 3'-end processing 1.42% (3/212) 4.39 0.000382 0.005491
GO:0006139 nucleobase-containing compound metabolic process 8.96% (19/212) 1.26 0.000431 0.005919
GO:1901564 organonitrogen compound metabolic process 17.92% (38/212) 0.81 0.000455 0.006103
GO:0043412 macromolecule modification 12.26% (26/212) 1.02 0.000489 0.006422
GO:0046483 heterocycle metabolic process 9.43% (20/212) 1.2 0.000512 0.006581
GO:0009360 DNA polymerase III complex 0.94% (2/212) 5.75 0.000567 0.007131
GO:0006725 cellular aromatic compound metabolic process 9.43% (20/212) 1.16 0.000695 0.008565
GO:0004652 obsolete polynucleotide adenylyltransferase activity 0.94% (2/212) 5.33 0.001049 0.012425
GO:0043631 obsolete RNA polyadenylation 0.94% (2/212) 5.33 0.001049 0.012425
GO:0140096 catalytic activity, acting on a protein 12.74% (27/212) 0.91 0.001238 0.014376
GO:0004373 glycogen (starch) synthase activity 0.94% (2/212) 5.16 0.001343 0.01531
GO:0042575 DNA polymerase complex 0.94% (2/212) 5.01 0.001672 0.018706
GO:0006259 DNA metabolic process 3.3% (7/212) 2.04 0.001705 0.018726
GO:0016887 ATP hydrolysis activity 3.3% (7/212) 1.96 0.002346 0.025299
GO:0034641 cellular nitrogen compound metabolic process 9.91% (21/212) 0.97 0.00265 0.028082
GO:0019538 protein metabolic process 14.15% (30/212) 0.77 0.002939 0.030604
GO:0017111 ribonucleoside triphosphate phosphatase activity 4.25% (9/212) 1.61 0.00301 0.030818
GO:0002161 aminoacyl-tRNA editing activity 0.94% (2/212) 4.52 0.003327 0.033492
GO:0006996 organelle organization 2.83% (6/212) 2.03 0.003699 0.036624
GO:0009658 chloroplast organization 0.94% (2/212) 4.42 0.003823 0.036655
GO:0009657 plastid organization 0.94% (2/212) 4.42 0.003823 0.036655
GO:0044877 protein-containing complex binding 1.89% (4/212) 2.62 0.004242 0.040039
GO:0016462 pyrophosphatase activity 4.25% (9/212) 1.52 0.004487 0.041061
GO:0006950 response to stress 6.13% (13/212) 1.21 0.004427 0.041138
GO:0008080 N-acetyltransferase activity 1.42% (3/212) 3.13 0.004889 0.044071
GO:0016817 hydrolase activity, acting on acid anhydrides 4.25% (9/212) 1.49 0.005215 0.044998
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.25% (9/212) 1.5 0.005088 0.045191
GO:0009057 macromolecule catabolic process 2.83% (6/212) 1.93 0.005173 0.045287
GO:0005802 trans-Golgi network 0.47% (1/212) 7.33 0.006212 0.045755
GO:0051103 DNA ligation involved in DNA repair 0.47% (1/212) 7.33 0.006212 0.045755
GO:0007155 cell adhesion 0.47% (1/212) 7.33 0.006212 0.045755
GO:0006361 transcription initiation at RNA polymerase I promoter 0.47% (1/212) 7.33 0.006212 0.045755
GO:0001181 RNA polymerase I general transcription initiation factor activity 0.47% (1/212) 7.33 0.006212 0.045755
GO:0055087 Ski complex 0.47% (1/212) 7.33 0.006212 0.045755
GO:0032367 intracellular cholesterol transport 0.47% (1/212) 7.33 0.006212 0.045755
GO:0006266 DNA ligation 0.47% (1/212) 7.33 0.006212 0.045755
GO:0030301 cholesterol transport 0.47% (1/212) 7.33 0.006212 0.045755
GO:0044599 AP-5 adaptor complex 0.47% (1/212) 7.33 0.006212 0.045755
GO:0016410 N-acyltransferase activity 1.42% (3/212) 2.99 0.006527 0.047494
GO:0016407 acetyltransferase activity 1.42% (3/212) 2.96 0.006827 0.048515
GO:0034061 DNA polymerase activity 0.94% (2/212) 4.01 0.006779 0.048741
GO:0016787 hydrolase activity 12.26% (26/212) 0.76 0.005833 0.04962
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (212) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms