Coexpression cluster: Cluster_220 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0070727 cellular macromolecule localization 8.06% (5/62) 3.49 8.5e-05 0.004751
GO:0008104 protein localization 8.06% (5/62) 3.49 8.5e-05 0.004751
GO:0033036 macromolecule localization 8.06% (5/62) 3.49 8.5e-05 0.004751
GO:0005488 binding 53.23% (33/62) 0.76 0.000296 0.006627
GO:0051179 localization 16.13% (10/62) 1.92 0.000266 0.006881
GO:0071705 nitrogen compound transport 8.06% (5/62) 3.07 0.000329 0.006901
GO:0051170 import into nucleus 3.23% (2/62) 6.3 0.000291 0.006992
GO:0034504 protein localization to nucleus 3.23% (2/62) 6.4 0.00025 0.007001
GO:0006606 protein import into nucleus 3.23% (2/62) 6.4 0.00025 0.007001
GO:0005515 protein binding 29.03% (18/62) 1.32 0.000174 0.007321
GO:0051641 cellular localization 8.06% (5/62) 3.03 0.000377 0.00745
GO:0006886 intracellular protein transport 6.45% (4/62) 3.88 0.000164 0.007873
GO:0006810 transport 16.13% (10/62) 1.97 0.000212 0.007898
GO:0051234 establishment of localization 16.13% (10/62) 1.94 0.000244 0.008186
GO:0045184 establishment of protein localization 8.06% (5/62) 3.53 7.4e-05 0.008289
GO:0140640 catalytic activity, acting on a nucleic acid 9.68% (6/62) 2.59 0.000479 0.008936
GO:0004386 helicase activity 6.45% (4/62) 4.23 6.3e-05 0.010544
GO:0015031 protein transport 8.06% (5/62) 3.68 4.5e-05 0.015039
GO:0051649 establishment of localization in cell 6.45% (4/62) 3.17 0.001043 0.017521
GO:0071702 organic substance transport 8.06% (5/62) 2.68 0.001113 0.017809
GO:0046907 intracellular transport 6.45% (4/62) 3.18 0.001012 0.017893
GO:0006357 regulation of transcription by RNA polymerase II 4.84% (3/62) 3.75 0.001479 0.022594
GO:0005968 Rab-protein geranylgeranyltransferase complex 1.61% (1/62) 9.1 0.001817 0.026539
GO:0006401 RNA catabolic process 3.23% (2/62) 4.86 0.002188 0.030639
GO:0018344 protein geranylgeranylation 1.61% (1/62) 8.1 0.00363 0.031274
GO:0016040 glutamate synthase (NADH) activity 1.61% (1/62) 8.1 0.00363 0.031274
GO:0010962 regulation of glucan biosynthetic process 1.61% (1/62) 8.1 0.00363 0.031274
GO:0032881 regulation of polysaccharide metabolic process 1.61% (1/62) 8.1 0.00363 0.031274
GO:0032885 regulation of polysaccharide biosynthetic process 1.61% (1/62) 8.1 0.00363 0.031274
GO:0032950 regulation of beta-glucan metabolic process 1.61% (1/62) 8.1 0.00363 0.031274
GO:0032951 regulation of beta-glucan biosynthetic process 1.61% (1/62) 8.1 0.00363 0.031274
GO:0043255 regulation of carbohydrate biosynthetic process 1.61% (1/62) 8.1 0.00363 0.031274
GO:0051211 anisotropic cell growth 1.61% (1/62) 8.1 0.00363 0.031274
GO:2001006 regulation of cellulose biosynthetic process 1.61% (1/62) 8.1 0.00363 0.031274
GO:0010330 cellulose synthase complex 1.61% (1/62) 8.1 0.00363 0.031274
GO:0045181 glutamate synthase activity, NAD(P)H as acceptor 1.61% (1/62) 8.1 0.00363 0.031274
GO:0006109 regulation of carbohydrate metabolic process 1.61% (1/62) 8.1 0.00363 0.031274
GO:0032991 protein-containing complex 11.29% (7/62) 1.81 0.003728 0.031311
GO:0016071 mRNA metabolic process 4.84% (3/62) 3.48 0.002506 0.033682
GO:0140098 catalytic activity, acting on RNA 6.45% (4/62) 2.61 0.004239 0.034737
GO:0006537 glutamate biosynthetic process 1.61% (1/62) 7.52 0.00544 0.035152
GO:0015930 glutamate synthase activity 1.61% (1/62) 7.52 0.00544 0.035152
GO:0004820 glycine-tRNA ligase activity 1.61% (1/62) 7.52 0.00544 0.035152
GO:0006426 glycyl-tRNA aminoacylation 1.61% (1/62) 7.52 0.00544 0.035152
GO:0016049 cell growth 1.61% (1/62) 7.52 0.00544 0.035152
GO:0006913 nucleocytoplasmic transport 3.23% (2/62) 4.27 0.00486 0.036285
GO:0008186 ATP-dependent activity, acting on RNA 3.23% (2/62) 4.3 0.004695 0.036683
GO:0003724 RNA helicase activity 3.23% (2/62) 4.3 0.004695 0.036683
GO:0003674 molecular_function 66.13% (41/62) 0.43 0.004858 0.037098
GO:0051169 nuclear transport 3.23% (2/62) 4.22 0.005198 0.037158
GO:0009987 cellular process 33.87% (21/62) 0.8 0.00512 0.0374
GO:0003743 translation initiation factor activity 3.23% (2/62) 4.61 0.003057 0.039504
GO:0034661 ncRNA catabolic process 1.61% (1/62) 7.1 0.007247 0.041983
GO:0006891 intra-Golgi vesicle-mediated transport 1.61% (1/62) 7.1 0.007247 0.041983
GO:0016075 rRNA catabolic process 1.61% (1/62) 7.1 0.007247 0.041983
GO:0040007 growth 1.61% (1/62) 7.1 0.007247 0.041983
GO:0072594 establishment of protein localization to organelle 3.23% (2/62) 4.02 0.006848 0.043414
GO:0000398 mRNA splicing, via spliceosome 3.23% (2/62) 3.93 0.007648 0.043555
GO:0033365 protein localization to organelle 3.23% (2/62) 4.0 0.007044 0.043831
GO:0090079 translation regulator activity, nucleic acid binding 3.23% (2/62) 3.86 0.008488 0.04527
GO:0008135 translation factor activity, RNA binding 3.23% (2/62) 3.86 0.008488 0.04527
GO:0017119 Golgi transport complex 1.61% (1/62) 6.78 0.009051 0.045389
GO:0070300 phosphatidic acid binding 1.61% (1/62) 6.78 0.009051 0.045389
GO:0043650 dicarboxylic acid biosynthetic process 1.61% (1/62) 6.78 0.009051 0.045389
GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor 1.61% (1/62) 6.78 0.009051 0.045389
GO:0016192 vesicle-mediated transport 4.84% (3/62) 2.86 0.00823 0.046089
GO:0006139 nucleobase-containing compound metabolic process 11.29% (7/62) 1.59 0.008379 0.046151
GO:0045182 translation regulator activity 3.23% (2/62) 3.75 0.009822 0.047147
GO:0090304 nucleic acid metabolic process 9.68% (6/62) 1.72 0.009732 0.047391
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.23% (2/62) 3.76 0.009594 0.047405
GO:0000375 RNA splicing, via transesterification reactions 3.23% (2/62) 3.7 0.010522 0.049794
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (62) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms