Coexpression cluster: Cluster_41 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901576 organic substance biosynthetic process 66.67% (136/204) 4.09 0.0 0.0
GO:0043226 organelle 64.22% (131/204) 4.56 0.0 0.0
GO:0043228 non-membrane-bounded organelle 63.73% (130/204) 5.75 0.0 0.0
GO:0043229 intracellular organelle 64.22% (131/204) 4.56 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 63.73% (130/204) 5.75 0.0 0.0
GO:0043603 amide metabolic process 63.73% (130/204) 5.75 0.0 0.0
GO:0043604 amide biosynthetic process 63.73% (130/204) 5.9 0.0 0.0
GO:0044237 cellular metabolic process 71.08% (145/204) 2.53 0.0 0.0
GO:0044238 primary metabolic process 70.1% (143/204) 2.12 0.0 0.0
GO:0044249 cellular biosynthetic process 66.67% (136/204) 4.21 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 65.2% (133/204) 4.83 0.0 0.0
GO:0044391 ribosomal subunit 15.69% (32/204) 6.18 0.0 0.0
GO:0071704 organic substance metabolic process 71.08% (145/204) 2.03 0.0 0.0
GO:0110165 cellular anatomical entity 67.16% (137/204) 3.15 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 66.67% (136/204) 2.7 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 65.2% (133/204) 5.03 0.0 0.0
GO:1990904 ribonucleoprotein complex 18.14% (37/204) 5.2 0.0 0.0
GO:0043170 macromolecule metabolic process 68.63% (140/204) 2.55 0.0 0.0
GO:0043043 peptide biosynthetic process 63.73% (130/204) 6.01 0.0 0.0
GO:0003735 structural constituent of ribosome 65.2% (133/204) 6.04 0.0 0.0
GO:0005198 structural molecule activity 65.2% (133/204) 5.83 0.0 0.0
GO:0005575 cellular_component 77.45% (158/204) 2.94 0.0 0.0
GO:0005840 ribosome 62.75% (128/204) 6.12 0.0 0.0
GO:0006412 translation 63.73% (130/204) 6.04 0.0 0.0
GO:0006518 peptide metabolic process 63.73% (130/204) 5.93 0.0 0.0
GO:0006807 nitrogen compound metabolic process 69.61% (142/204) 2.4 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 68.14% (139/204) 3.75 0.0 0.0
GO:0008152 metabolic process 72.55% (148/204) 1.97 0.0 0.0
GO:0019538 protein metabolic process 65.2% (133/204) 2.97 0.0 0.0
GO:0009987 cellular process 75.98% (155/204) 1.97 0.0 0.0
GO:0009059 macromolecule biosynthetic process 64.71% (132/204) 5.13 0.0 0.0
GO:0009058 biosynthetic process 66.67% (136/204) 3.96 0.0 0.0
GO:0008150 biological_process 77.45% (158/204) 1.26 0.0 0.0
GO:0032991 protein-containing complex 24.51% (50/204) 2.93 0.0 0.0
GO:0015934 large ribosomal subunit 8.82% (18/204) 6.06 0.0 0.0
GO:0015935 small ribosomal subunit 6.86% (14/204) 6.34 0.0 0.0
GO:0003723 RNA binding 16.67% (34/204) 2.97 0.0 0.0
GO:0003674 molecular_function 75.0% (153/204) 0.61 0.0 0.0
GO:0022625 cytosolic large ribosomal subunit 3.43% (7/204) 6.02 0.0 0.0
GO:0019843 rRNA binding 2.94% (6/204) 5.11 0.0 0.0
GO:0098798 mitochondrial protein-containing complex 3.43% (7/204) 4.47 0.0 0.0
GO:0042254 ribosome biogenesis 2.45% (5/204) 5.39 0.0 1e-06
GO:0098800 inner mitochondrial membrane protein complex 2.94% (6/204) 4.54 0.0 2e-06
GO:0022613 ribonucleoprotein complex biogenesis 2.45% (5/204) 5.01 0.0 3e-06
GO:0003676 nucleic acid binding 18.14% (37/204) 1.15 4e-06 2.5e-05
GO:0098803 respiratory chain complex 1.96% (4/204) 4.63 2e-05 0.00013
GO:0022618 protein-RNA complex assembly 1.96% (4/204) 4.63 2e-05 0.00013
GO:0071826 protein-RNA complex organization 1.96% (4/204) 4.48 3e-05 0.000197
GO:1902495 transmembrane transporter complex 1.47% (3/204) 5.51 3.4e-05 0.00021
GO:1990351 transporter complex 1.47% (3/204) 5.51 3.4e-05 0.00021
GO:0000387 spliceosomal snRNP assembly 1.47% (3/204) 5.27 5.8e-05 0.000355
GO:0019646 aerobic electron transport chain 1.47% (3/204) 5.06 9.1e-05 0.000548
GO:0009060 aerobic respiration 1.47% (3/204) 4.97 0.000111 0.000659
GO:0044085 cellular component biogenesis 2.45% (5/204) 3.39 0.000121 0.000706
GO:0045333 cellular respiration 1.47% (3/204) 4.88 0.000135 0.000768
GO:0098796 membrane protein complex 3.92% (8/204) 2.38 0.000173 0.000972
GO:0022904 respiratory electron transport chain 1.47% (3/204) 4.51 0.000298 0.001642
GO:1990204 oxidoreductase complex 1.96% (4/204) 3.63 0.00031 0.001679
GO:0005681 spliceosomal complex 1.47% (3/204) 4.33 0.000439 0.002338
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) 0.98% (2/204) 5.8 0.000525 0.002747
GO:0015980 energy derivation by oxidation of organic compounds 1.47% (3/204) 4.22 0.000554 0.00285
GO:0006414 translational elongation 1.47% (3/204) 4.16 0.000617 0.003127
GO:0005750 mitochondrial respiratory chain complex III 0.98% (2/204) 5.58 0.000732 0.003483
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c 0.98% (2/204) 5.58 0.000732 0.003483
GO:0045275 respiratory chain complex III 0.98% (2/204) 5.58 0.000732 0.003483
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.98% (2/204) 5.58 0.000732 0.003483
GO:0009145 purine nucleoside triphosphate biosynthetic process 1.47% (3/204) 4.06 0.000758 0.003502
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 1.47% (3/204) 4.06 0.000758 0.003502
GO:0000470 maturation of LSU-rRNA 0.98% (2/204) 5.39 0.000972 0.004424
GO:0006364 rRNA processing 1.96% (4/204) 3.16 0.001081 0.004851
GO:0009201 ribonucleoside triphosphate biosynthetic process 1.47% (3/204) 3.84 0.001196 0.005217
GO:0009142 nucleoside triphosphate biosynthetic process 1.47% (3/204) 3.84 0.001196 0.005217
GO:0016072 rRNA metabolic process 1.96% (4/204) 3.06 0.001375 0.005914
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 0.98% (2/204) 5.06 0.00155 0.006578
GO:0005730 nucleolus 0.98% (2/204) 4.58 0.003086 0.01292
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 0.98% (2/204) 4.14 0.005686 0.02289
GO:0070069 cytochrome complex 0.98% (2/204) 4.14 0.005686 0.02289
GO:0022900 electron transport chain 1.47% (3/204) 3.06 0.005606 0.023163
GO:0061657 UFM1 conjugating enzyme activity 0.49% (1/204) 7.39 0.005977 0.023171
GO:0061650 ubiquitin-like protein conjugating enzyme activity 0.49% (1/204) 7.39 0.005977 0.023171
GO:0009152 purine ribonucleotide biosynthetic process 1.47% (3/204) 3.04 0.005871 0.023335
GO:0009260 ribonucleotide biosynthetic process 1.47% (3/204) 2.88 0.00793 0.03
GO:0046390 ribose phosphate biosynthetic process 1.47% (3/204) 2.88 0.00793 0.03
GO:0015986 proton motive force-driven ATP synthesis 0.98% (2/204) 3.8 0.008999 0.033245
GO:0006754 ATP biosynthetic process 0.98% (2/204) 3.8 0.008999 0.033245
GO:0034470 ncRNA processing 1.96% (4/204) 2.26 0.010107 0.036902
GO:0065003 protein-containing complex assembly 1.96% (4/204) 2.22 0.011121 0.040137
GO:0006164 purine nucleotide biosynthetic process 1.47% (3/204) 2.67 0.011929 0.041163
GO:0071256 translocon complex 0.49% (1/204) 6.39 0.011919 0.041584
GO:0071568 UFM1 transferase activity 0.49% (1/204) 6.39 0.011919 0.041584
GO:0005784 Sec61 translocon complex 0.49% (1/204) 6.39 0.011919 0.041584
GO:0016776 phosphotransferase activity, phosphate group as acceptor 0.98% (2/204) 3.48 0.013855 0.04678
GO:0019205 nucleobase-containing compound kinase activity 0.98% (2/204) 3.48 0.013855 0.04678
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (204) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms