Coexpression cluster: Cluster_150 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034660 ncRNA metabolic process 12.9% (8/62) 4.41 0.0 1e-06
GO:0090304 nucleic acid metabolic process 20.97% (13/62) 2.83 0.0 4e-06
GO:0006139 nucleobase-containing compound metabolic process 22.58% (14/62) 2.59 0.0 5e-06
GO:0034641 cellular nitrogen compound metabolic process 25.81% (16/62) 2.35 0.0 6e-06
GO:0003676 nucleic acid binding 30.65% (19/62) 1.91 0.0 7e-06
GO:0044237 cellular metabolic process 38.71% (24/62) 1.66 0.0 8e-06
GO:1901360 organic cyclic compound metabolic process 22.58% (14/62) 2.38 0.0 8e-06
GO:0008135 translation factor activity, RNA binding 8.06% (5/62) 5.18 0.0 8e-06
GO:0090079 translation regulator activity, nucleic acid binding 8.06% (5/62) 5.18 0.0 8e-06
GO:0016072 rRNA metabolic process 8.06% (5/62) 5.1 0.0 8e-06
GO:0006807 nitrogen compound metabolic process 38.71% (24/62) 1.56 0.0 8e-06
GO:0045182 translation regulator activity 8.06% (5/62) 5.07 0.0 9e-06
GO:0003674 molecular_function 80.65% (50/62) 0.72 0.0 9e-06
GO:0046483 heterocycle metabolic process 22.58% (14/62) 2.46 0.0 1e-05
GO:0006364 rRNA processing 8.06% (5/62) 5.2 0.0 1e-05
GO:0009987 cellular process 48.39% (30/62) 1.32 0.0 1.1e-05
GO:0006725 cellular aromatic compound metabolic process 22.58% (14/62) 2.42 0.0 1.1e-05
GO:0140640 catalytic activity, acting on a nucleic acid 14.52% (9/62) 3.18 1e-06 1.2e-05
GO:0016070 RNA metabolic process 16.13% (10/62) 2.9 1e-06 1.5e-05
GO:0043170 macromolecule metabolic process 35.48% (22/62) 1.6 1e-06 1.5e-05
GO:0008152 metabolic process 45.16% (28/62) 1.28 1e-06 2.2e-05
GO:0003743 translation initiation factor activity 6.45% (4/62) 5.61 1e-06 2.2e-05
GO:0097159 organic cyclic compound binding 43.55% (27/62) 1.26 3e-06 4.9e-05
GO:0044238 primary metabolic process 40.32% (25/62) 1.33 4e-06 5.5e-05
GO:0140098 catalytic activity, acting on RNA 11.29% (7/62) 3.42 4e-06 5.6e-05
GO:0005488 binding 59.68% (37/62) 0.93 4e-06 5.7e-05
GO:0071704 organic substance metabolic process 41.94% (26/62) 1.27 5e-06 6.6e-05
GO:0034470 ncRNA processing 8.06% (5/62) 4.3 6e-06 7e-05
GO:0003723 RNA binding 14.52% (9/62) 2.77 6e-06 7.2e-05
GO:1990904 ribonucleoprotein complex 8.06% (5/62) 4.03 1.4e-05 0.000157
GO:0035639 purine ribonucleoside triphosphate binding 24.19% (15/62) 1.79 1.7e-05 0.000189
GO:0140101 catalytic activity, acting on a tRNA 6.45% (4/62) 4.5 3e-05 0.000266
GO:0032991 protein-containing complex 16.13% (10/62) 2.32 2.7e-05 0.000269
GO:0071840 cellular component organization or biogenesis 12.9% (8/62) 2.69 3.2e-05 0.000272
GO:0006082 organic acid metabolic process 11.29% (7/62) 2.98 3e-05 0.000272
GO:0019752 carboxylic acid metabolic process 11.29% (7/62) 2.99 2.8e-05 0.000273
GO:0032259 methylation 6.45% (4/62) 4.48 3.3e-05 0.000274
GO:0005524 ATP binding 22.58% (14/62) 1.83 2.6e-05 0.000276
GO:0043436 oxoacid metabolic process 11.29% (7/62) 2.98 3e-05 0.000276
GO:0005575 cellular_component 29.03% (18/62) 1.52 2.7e-05 0.000277
GO:0004386 helicase activity 6.45% (4/62) 4.23 6.3e-05 0.000514
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.23% (2/62) 7.3 6.8e-05 0.000542
GO:0032555 purine ribonucleotide binding 24.19% (15/62) 1.62 7.3e-05 0.000573
GO:0015934 large ribosomal subunit 4.84% (3/62) 5.2 7.7e-05 0.000586
GO:0032553 ribonucleotide binding 24.19% (15/62) 1.6 8.5e-05 0.000634
GO:0000470 maturation of LSU-rRNA 3.23% (2/62) 7.1 9e-05 0.000659
GO:0097367 carbohydrate derivative binding 24.19% (15/62) 1.58 9.5e-05 0.000678
GO:0032559 adenyl ribonucleotide binding 22.58% (14/62) 1.64 0.000114 0.0008
GO:0017076 purine nucleotide binding 24.19% (15/62) 1.55 0.000126 0.000865
GO:0006520 amino acid metabolic process 8.06% (5/62) 3.35 0.000134 0.000899
GO:0003724 RNA helicase activity 4.84% (3/62) 4.88 0.000148 0.000955
GO:0008186 ATP-dependent activity, acting on RNA 4.84% (3/62) 4.88 0.000148 0.000955
GO:0043038 amino acid activation 4.84% (3/62) 4.71 0.00021 0.001215
GO:0016875 ligase activity, forming carbon-oxygen bonds 4.84% (3/62) 4.71 0.00021 0.001215
GO:0004812 aminoacyl-tRNA ligase activity 4.84% (3/62) 4.71 0.00021 0.001215
GO:0006418 tRNA aminoacylation for protein translation 4.84% (3/62) 4.71 0.00021 0.001215
GO:0043039 tRNA aminoacylation 4.84% (3/62) 4.71 0.00021 0.001215
GO:0008150 biological_process 54.84% (34/62) 0.76 0.000215 0.001223
GO:0030554 adenyl nucleotide binding 22.58% (14/62) 1.56 0.000195 0.001235
GO:0000166 nucleotide binding 24.19% (15/62) 1.46 0.000236 0.001299
GO:1901265 nucleoside phosphate binding 24.19% (15/62) 1.46 0.000236 0.001299
GO:0051276 chromosome organization 4.84% (3/62) 4.65 0.000241 0.001305
GO:0016874 ligase activity 6.45% (4/62) 3.72 0.000247 0.001319
GO:0043168 anion binding 24.19% (15/62) 1.45 0.000258 0.001355
GO:0002161 aminoacyl-tRNA editing activity 3.23% (2/62) 6.3 0.000291 0.001506
GO:0044391 ribosomal subunit 4.84% (3/62) 4.48 0.000338 0.001693
GO:0000049 tRNA binding 3.23% (2/62) 6.2 0.000336 0.001709
GO:1901363 heterocyclic compound binding 24.19% (15/62) 1.41 0.000355 0.001753
GO:0036094 small molecule binding 24.19% (15/62) 1.4 0.000388 0.001889
GO:0006396 RNA processing 8.06% (5/62) 2.97 0.000448 0.002148
GO:0043414 macromolecule methylation 4.84% (3/62) 4.33 0.000456 0.00216
GO:0005852 eukaryotic translation initiation factor 3 complex 3.23% (2/62) 5.93 0.000488 0.002244
GO:0022625 cytosolic large ribosomal subunit 3.23% (2/62) 5.93 0.000488 0.002244
GO:0044281 small molecule metabolic process 11.29% (7/62) 2.29 0.000565 0.002564
GO:0005737 cytoplasm 6.45% (4/62) 3.38 0.000609 0.002692
GO:0042254 ribosome biogenesis 3.23% (2/62) 5.78 0.000604 0.002706
GO:0071103 DNA conformation change 3.23% (2/62) 5.71 0.000667 0.00291
GO:0003824 catalytic activity 43.55% (27/62) 0.83 0.000756 0.003257
GO:0016043 cellular component organization 9.68% (6/62) 2.45 0.000789 0.003354
GO:0006996 organelle organization 6.45% (4/62) 3.22 0.000908 0.003814
GO:0022613 ribonucleoprotein complex biogenesis 3.23% (2/62) 5.4 0.001026 0.004256
GO:0009067 aspartate family amino acid biosynthetic process 3.23% (2/62) 5.25 0.001277 0.005234
GO:0008168 methyltransferase activity 6.45% (4/62) 3.05 0.001411 0.005714
GO:0009066 aspartate family amino acid metabolic process 3.23% (2/62) 5.15 0.001459 0.005838
GO:0006399 tRNA metabolic process 4.84% (3/62) 3.71 0.001585 0.006266
GO:0016741 transferase activity, transferring one-carbon groups 6.45% (4/62) 2.97 0.001725 0.006738
GO:0006335 DNA replication-dependent chromatin assembly 1.61% (1/62) 9.1 0.001817 0.007016
GO:0140657 ATP-dependent activity 8.06% (5/62) 2.51 0.001854 0.007081
GO:0008213 protein alkylation 3.23% (2/62) 4.71 0.002668 0.00996
GO:0006479 protein methylation 3.23% (2/62) 4.71 0.002668 0.00996
GO:0016428 tRNA (cytidine-5-)-methyltransferase activity 1.61% (1/62) 8.1 0.00363 0.01232
GO:0008837 diaminopimelate epimerase activity 1.61% (1/62) 8.1 0.00363 0.01232
GO:0031499 TRAMP complex 1.61% (1/62) 8.1 0.00363 0.01232
GO:0004832 valine-tRNA ligase activity 1.61% (1/62) 8.1 0.00363 0.01232
GO:0006438 valyl-tRNA aminoacylation 1.61% (1/62) 8.1 0.00363 0.01232
GO:0016427 tRNA (cytidine) methyltransferase activity 1.61% (1/62) 8.1 0.00363 0.01232
GO:0004412 homoserine dehydrogenase activity 1.61% (1/62) 8.1 0.00363 0.01232
GO:0003735 structural constituent of ribosome 6.45% (4/62) 2.7 0.003391 0.012522
GO:1901564 organonitrogen compound metabolic process 22.58% (14/62) 1.14 0.003473 0.012684
GO:0101005 deubiquitinase activity 3.23% (2/62) 4.25 0.005027 0.016892
GO:0034511 U3 snoRNA binding 1.61% (1/62) 7.52 0.00544 0.017409
GO:0042256 cytosolic ribosome assembly 1.61% (1/62) 7.52 0.00544 0.017409
GO:0036361 racemase activity, acting on amino acids and derivatives 1.61% (1/62) 7.52 0.00544 0.017409
GO:0047661 amino-acid racemase activity 1.61% (1/62) 7.52 0.00544 0.017409
GO:0019783 ubiquitin-like protein peptidase activity 3.23% (2/62) 4.17 0.005546 0.01758
GO:0005198 structural molecule activity 6.45% (4/62) 2.49 0.00561 0.017618
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 3.23% (2/62) 4.2 0.005371 0.017867
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 1.61% (1/62) 7.1 0.007247 0.021549
GO:0006471 obsolete protein ADP-ribosylation 1.61% (1/62) 7.1 0.007247 0.021549
GO:0042255 ribosome assembly 1.61% (1/62) 7.1 0.007247 0.021549
GO:0006428 isoleucyl-tRNA aminoacylation 1.61% (1/62) 7.1 0.007247 0.021549
GO:0004822 isoleucine-tRNA ligase activity 1.61% (1/62) 7.1 0.007247 0.021549
GO:0006325 chromatin organization 3.23% (2/62) 3.98 0.007243 0.022534
GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity 1.61% (1/62) 6.78 0.009051 0.025772
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity 1.61% (1/62) 6.78 0.009051 0.025772
GO:0006420 arginyl-tRNA aminoacylation 1.61% (1/62) 6.78 0.009051 0.025772
GO:0004814 arginine-tRNA ligase activity 1.61% (1/62) 6.78 0.009051 0.025772
GO:0004072 aspartate kinase activity 1.61% (1/62) 6.78 0.009051 0.025772
GO:0044085 cellular component biogenesis 3.23% (2/62) 3.78 0.009368 0.02645
GO:0071824 protein-DNA complex organization 3.23% (2/62) 3.73 0.010053 0.028149
GO:0005515 protein binding 22.58% (14/62) 0.95 0.010746 0.029839
GO:1901607 alpha-amino acid biosynthetic process 3.23% (2/62) 3.58 0.012238 0.033704
GO:0018195 peptidyl-arginine modification 1.61% (1/62) 6.1 0.014443 0.035946
GO:0019202 amino acid kinase activity 1.61% (1/62) 6.1 0.014443 0.035946
GO:0018216 peptidyl-arginine methylation 1.61% (1/62) 6.1 0.014443 0.035946
GO:0042555 MCM complex 1.61% (1/62) 6.1 0.014443 0.035946
GO:0043631 obsolete RNA polyadenylation 1.61% (1/62) 6.1 0.014443 0.035946
GO:0004652 obsolete polynucleotide adenylyltransferase activity 1.61% (1/62) 6.1 0.014443 0.035946
GO:0008175 tRNA methyltransferase activity 1.61% (1/62) 6.1 0.014443 0.035946
GO:0004467 long-chain fatty acid-CoA ligase activity 1.61% (1/62) 6.1 0.014443 0.035946
GO:0015645 fatty acid ligase activity 1.61% (1/62) 6.1 0.014443 0.035946
GO:0052689 carboxylic ester hydrolase activity 3.23% (2/62) 3.52 0.01327 0.036249
GO:0034655 nucleobase-containing compound catabolic process 3.23% (2/62) 3.43 0.014885 0.036776
GO:0006259 DNA metabolic process 4.84% (3/62) 2.59 0.013662 0.037021
GO:0009085 lysine biosynthetic process 1.61% (1/62) 5.93 0.016233 0.037105
GO:0046451 diaminopimelate metabolic process 1.61% (1/62) 5.93 0.016233 0.037105
GO:0009089 lysine biosynthetic process via diaminopimelate 1.61% (1/62) 5.93 0.016233 0.037105
GO:0006553 lysine metabolic process 1.61% (1/62) 5.93 0.016233 0.037105
GO:0032392 DNA geometric change 1.61% (1/62) 5.93 0.016233 0.037105
GO:0032508 DNA duplex unwinding 1.61% (1/62) 5.93 0.016233 0.037105
GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer 1.61% (1/62) 5.93 0.016233 0.037105
GO:0016274 protein-arginine N-methyltransferase activity 1.61% (1/62) 5.93 0.016233 0.037105
GO:0003950 NAD+ ADP-ribosyltransferase activity 1.61% (1/62) 5.93 0.016233 0.037105
GO:0016273 arginine N-methyltransferase activity 1.61% (1/62) 5.93 0.016233 0.037105
GO:0044270 cellular nitrogen compound catabolic process 3.23% (2/62) 3.35 0.016582 0.037645
GO:0018193 peptidyl-amino acid modification 3.23% (2/62) 3.48 0.014067 0.037813
GO:0043167 ion binding 25.81% (16/62) 0.82 0.014234 0.037957
GO:0046700 heterocycle catabolic process 3.23% (2/62) 3.34 0.016872 0.038048
GO:0110165 cellular anatomical entity 16.13% (10/62) 1.1 0.017064 0.038223
GO:0016740 transferase activity 19.35% (12/62) 0.97 0.017355 0.038619
GO:0008652 amino acid biosynthetic process 3.23% (2/62) 3.38 0.016008 0.03926
GO:0016405 CoA-ligase activity 1.61% (1/62) 5.78 0.018021 0.039318
GO:0007064 mitotic sister chromatid cohesion 1.61% (1/62) 5.78 0.018021 0.039318
GO:0016878 acid-thiol ligase activity 1.61% (1/62) 5.78 0.018021 0.039318
GO:0070122 obsolete isopeptidase activity 1.61% (1/62) 5.65 0.019805 0.042658
GO:0140492 metal-dependent deubiquitinase activity 1.61% (1/62) 5.65 0.019805 0.042658
GO:0006265 DNA topological change 1.61% (1/62) 5.52 0.021587 0.046198
GO:0016774 phosphotransferase activity, carboxyl group as acceptor 1.61% (1/62) 5.4 0.023365 0.049066
GO:0005694 chromosome 1.61% (1/62) 5.4 0.023365 0.049066
GO:0006270 DNA replication initiation 1.61% (1/62) 5.4 0.023365 0.049066
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (62) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms