Coexpression cluster: Cluster_76 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009059 macromolecule biosynthetic process 18.31% (26/142) 3.31 0.0 0.0
GO:0003735 structural constituent of ribosome 14.79% (21/142) 3.9 0.0 0.0
GO:0005198 structural molecule activity 14.79% (21/142) 3.69 0.0 0.0
GO:0005840 ribosome 13.38% (19/142) 3.89 0.0 0.0
GO:0044249 cellular biosynthetic process 21.83% (31/142) 2.6 0.0 0.0
GO:0006518 peptide metabolic process 13.38% (19/142) 3.68 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 17.61% (25/142) 2.95 0.0 0.0
GO:0005575 cellular_component 34.51% (49/142) 1.77 0.0 0.0
GO:0006412 translation 12.68% (18/142) 3.71 0.0 0.0
GO:1901576 organic substance biosynthetic process 21.83% (31/142) 2.48 0.0 0.0
GO:0043043 peptide biosynthetic process 12.68% (18/142) 3.68 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 13.38% (19/142) 3.5 0.0 0.0
GO:0043228 non-membrane-bounded organelle 13.38% (19/142) 3.5 0.0 0.0
GO:0043603 amide metabolic process 13.38% (19/142) 3.5 0.0 0.0
GO:0043604 amide biosynthetic process 12.68% (18/142) 3.57 0.0 0.0
GO:0009058 biosynthetic process 21.83% (31/142) 2.35 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 15.49% (22/142) 2.96 0.0 0.0
GO:0043229 intracellular organelle 16.9% (24/142) 2.63 0.0 0.0
GO:0043226 organelle 16.9% (24/142) 2.63 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 21.13% (30/142) 2.06 0.0 0.0
GO:0032991 protein-containing complex 16.9% (24/142) 2.39 0.0 0.0
GO:0044237 cellular metabolic process 28.17% (40/142) 1.2 0.0 7e-06
GO:0009987 cellular process 37.32% (53/142) 0.94 0.0 1.1e-05
GO:1990904 ribonucleoprotein complex 5.63% (8/142) 3.52 1e-06 1.2e-05
GO:0110165 cellular anatomical entity 19.01% (27/142) 1.33 7e-06 0.000151
GO:0006406 mRNA export from nucleus 2.11% (3/142) 6.03 1.1e-05 0.000222
GO:0051028 mRNA transport 2.11% (3/142) 6.03 1.1e-05 0.000222
GO:0008541 proteasome regulatory particle, lid subcomplex 1.41% (2/142) 7.91 1.7e-05 0.000324
GO:0043170 macromolecule metabolic process 23.94% (34/142) 1.03 3.3e-05 0.000591
GO:0015934 large ribosomal subunit 2.82% (4/142) 4.42 3.7e-05 0.000658
GO:0006405 RNA export from nucleus 2.11% (3/142) 5.41 4.6e-05 0.000781
GO:0051236 establishment of RNA localization 2.11% (3/142) 5.32 5.5e-05 0.000828
GO:0022625 cytosolic large ribosomal subunit 2.11% (3/142) 5.32 5.5e-05 0.000828
GO:0050658 RNA transport 2.11% (3/142) 5.32 5.5e-05 0.000828
GO:0050657 nucleic acid transport 2.11% (3/142) 5.32 5.5e-05 0.000828
GO:0051641 cellular localization 5.63% (8/142) 2.51 9e-05 0.001325
GO:0006913 nucleocytoplasmic transport 2.82% (4/142) 4.08 9.6e-05 0.001362
GO:0006448 regulation of translational elongation 1.41% (2/142) 6.91 0.000103 0.001423
GO:0051169 nuclear transport 2.82% (4/142) 4.03 0.000109 0.001479
GO:0051168 nuclear export 2.11% (3/142) 4.85 0.000152 0.001998
GO:0002182 cytoplasmic translational elongation 1.41% (2/142) 6.59 0.00017 0.002191
GO:0006414 translational elongation 2.11% (3/142) 4.69 0.000214 0.002686
GO:0044391 ribosomal subunit 2.82% (4/142) 3.7 0.000264 0.003231
GO:0090079 translation regulator activity, nucleic acid binding 2.82% (4/142) 3.66 0.000292 0.003421
GO:0008135 translation factor activity, RNA binding 2.82% (4/142) 3.66 0.000292 0.003421
GO:0006807 nitrogen compound metabolic process 23.94% (34/142) 0.86 0.000341 0.003911
GO:0019438 aromatic compound biosynthetic process 5.63% (8/142) 2.2 0.000381 0.004275
GO:0045182 translation regulator activity 2.82% (4/142) 3.55 0.000391 0.004289
GO:0000152 nuclear ubiquitin ligase complex 1.41% (2/142) 5.91 0.000473 0.004893
GO:0016272 prefoldin complex 1.41% (2/142) 5.91 0.000473 0.004893
GO:0005680 anaphase-promoting complex 1.41% (2/142) 5.91 0.000473 0.004893
GO:0034654 nucleobase-containing compound biosynthetic process 4.93% (7/142) 2.35 0.000484 0.004904
GO:0008152 metabolic process 30.28% (43/142) 0.7 0.000499 0.004967
GO:0046907 intracellular transport 4.23% (6/142) 2.57 0.00056 0.005461
GO:0051649 establishment of localization in cell 4.23% (6/142) 2.56 0.000584 0.005597
GO:0051879 Hsp90 protein binding 1.41% (2/142) 5.74 0.000607 0.005713
GO:0140535 intracellular protein-containing complex 3.52% (5/142) 2.88 0.000618 0.005718
GO:0043248 proteasome assembly 1.41% (2/142) 5.59 0.000757 0.006876
GO:1901362 organic cyclic compound biosynthetic process 5.63% (8/142) 2.04 0.000809 0.007223
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.11% (3/142) 4.03 0.000824 0.007239
GO:0015931 nucleobase-containing compound transport 2.11% (3/142) 3.97 0.000939 0.008112
GO:0008150 biological_process 45.07% (64/142) 0.48 0.001053 0.008949
GO:0004298 threonine-type endopeptidase activity 1.41% (2/142) 5.32 0.001104 0.009234
GO:0097747 RNA polymerase activity 2.11% (3/142) 3.79 0.001342 0.010719
GO:0034062 5'-3' RNA polymerase activity 2.11% (3/142) 3.79 0.001342 0.010719
GO:0022607 cellular component assembly 3.52% (5/142) 2.64 0.001316 0.010837
GO:0098798 mitochondrial protein-containing complex 2.11% (3/142) 3.77 0.001419 0.011158
GO:0070003 threonine-type peptidase activity 1.41% (2/142) 5.1 0.001514 0.011732
GO:0071704 organic substance metabolic process 27.46% (39/142) 0.66 0.001879 0.01435
GO:1902494 catalytic complex 4.23% (6/142) 2.21 0.001982 0.014923
GO:0018130 heterocycle biosynthetic process 4.93% (7/142) 1.98 0.00214 0.015883
GO:0006351 DNA-templated transcription 2.82% (4/142) 2.83 0.002494 0.018256
GO:0071705 nitrogen compound transport 4.23% (6/142) 2.14 0.002583 0.018645
GO:0031461 cullin-RING ubiquitin ligase complex 1.41% (2/142) 4.66 0.002806 0.019984
GO:0044238 primary metabolic process 25.35% (36/142) 0.66 0.002973 0.020892
GO:0065003 protein-containing complex assembly 2.82% (4/142) 2.74 0.003146 0.021534
GO:0005739 mitochondrion 1.41% (2/142) 4.59 0.003109 0.021561
GO:0006244 pyrimidine nucleotide catabolic process 0.7% (1/142) 7.91 0.004161 0.021927
GO:0046386 deoxyribose phosphate catabolic process 0.7% (1/142) 7.91 0.004161 0.021927
GO:0009213 pyrimidine deoxyribonucleoside triphosphate catabolic process 0.7% (1/142) 7.91 0.004161 0.021927
GO:0046080 dUTP metabolic process 0.7% (1/142) 7.91 0.004161 0.021927
GO:0046078 dUMP metabolic process 0.7% (1/142) 7.91 0.004161 0.021927
GO:0009211 pyrimidine deoxyribonucleoside triphosphate metabolic process 0.7% (1/142) 7.91 0.004161 0.021927
GO:0009149 pyrimidine nucleoside triphosphate catabolic process 0.7% (1/142) 7.91 0.004161 0.021927
GO:0009223 pyrimidine deoxyribonucleotide catabolic process 0.7% (1/142) 7.91 0.004161 0.021927
GO:0006226 dUMP biosynthetic process 0.7% (1/142) 7.91 0.004161 0.021927
GO:0046081 dUTP catabolic process 0.7% (1/142) 7.91 0.004161 0.021927
GO:0004170 dUTP diphosphatase activity 0.7% (1/142) 7.91 0.004161 0.021927
GO:0090231 regulation of spindle checkpoint 0.7% (1/142) 7.91 0.004161 0.021927
GO:1903504 regulation of mitotic spindle checkpoint 0.7% (1/142) 7.91 0.004161 0.021927
GO:1901976 regulation of cell cycle checkpoint 0.7% (1/142) 7.91 0.004161 0.021927
GO:0000313 organellar ribosome 0.7% (1/142) 7.91 0.004161 0.021927
GO:0005761 mitochondrial ribosome 0.7% (1/142) 7.91 0.004161 0.021927
GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint 0.7% (1/142) 7.91 0.004161 0.021927
GO:0045900 negative regulation of translational elongation 0.7% (1/142) 7.91 0.004161 0.021927
GO:0003723 RNA binding 6.34% (9/142) 1.58 0.00343 0.022594
GO:0003746 translation elongation factor activity 1.41% (2/142) 4.52 0.003427 0.022863
GO:0000151 ubiquitin ligase complex 1.41% (2/142) 4.52 0.003427 0.022863
GO:0015986 proton motive force-driven ATP synthesis 1.41% (2/142) 4.32 0.004468 0.023084
GO:0006754 ATP biosynthetic process 1.41% (2/142) 4.32 0.004468 0.023084
GO:0098796 membrane protein complex 3.52% (5/142) 2.22 0.004596 0.023516
GO:0005681 spliceosomal complex 1.41% (2/142) 4.27 0.004843 0.023854
GO:0006413 translational initiation 1.41% (2/142) 4.27 0.004843 0.023854
GO:0031072 heat shock protein binding 1.41% (2/142) 4.27 0.004843 0.023854
GO:0005839 proteasome core complex 1.41% (2/142) 4.27 0.004843 0.023854
GO:1901564 organonitrogen compound metabolic process 17.61% (25/142) 0.78 0.005 0.024399
GO:0016070 RNA metabolic process 6.34% (9/142) 1.55 0.003885 0.025275
GO:0140513 nuclear protein-containing complex 3.52% (5/142) 2.27 0.004026 0.025874
GO:0006605 protein targeting 1.41% (2/142) 4.1 0.006053 0.029265
GO:0006417 regulation of translation 1.41% (2/142) 4.0 0.006928 0.03231
GO:0034248 regulation of amide metabolic process 1.41% (2/142) 4.0 0.006928 0.03231
GO:0009145 purine nucleoside triphosphate biosynthetic process 1.41% (2/142) 4.0 0.006928 0.03231
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 1.41% (2/142) 4.0 0.006928 0.03231
GO:0019538 protein metabolic process 14.79% (21/142) 0.83 0.007027 0.032483
GO:0006725 cellular aromatic compound metabolic process 9.15% (13/142) 1.12 0.007192 0.032957
GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process 0.7% (1/142) 6.91 0.008304 0.033154
GO:0042030 ATPase inhibitor activity 0.7% (1/142) 6.91 0.008304 0.033154
GO:0009162 deoxyribonucleoside monophosphate metabolic process 0.7% (1/142) 6.91 0.008304 0.033154
GO:2000144 positive regulation of DNA-templated transcription initiation 0.7% (1/142) 6.91 0.008304 0.033154
GO:2000142 regulation of DNA-templated transcription initiation 0.7% (1/142) 6.91 0.008304 0.033154
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process 0.7% (1/142) 6.91 0.008304 0.033154
GO:0060261 positive regulation of transcription initiation by RNA polymerase II 0.7% (1/142) 6.91 0.008304 0.033154
GO:0060260 regulation of transcription initiation by RNA polymerase II 0.7% (1/142) 6.91 0.008304 0.033154
GO:0032875 regulation of DNA endoreduplication 0.7% (1/142) 6.91 0.008304 0.033154
GO:0009264 deoxyribonucleotide catabolic process 0.7% (1/142) 6.91 0.008304 0.033154
GO:0010506 regulation of autophagy 0.7% (1/142) 6.91 0.008304 0.033154
GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process 0.7% (1/142) 6.91 0.008304 0.033154
GO:0031417 NatC complex 0.7% (1/142) 6.91 0.008304 0.033154
GO:0006139 nucleobase-containing compound metabolic process 8.45% (12/142) 1.17 0.007348 0.033384
GO:0010564 regulation of cell cycle process 1.41% (2/142) 3.91 0.007857 0.034794
GO:0010608 post-transcriptional regulation of gene expression 1.41% (2/142) 3.91 0.007857 0.034794
GO:0009141 nucleoside triphosphate metabolic process 2.11% (3/142) 2.89 0.007818 0.035215
GO:1901360 organic cyclic compound metabolic process 9.15% (13/142) 1.08 0.008984 0.035597
GO:1901293 nucleoside phosphate biosynthetic process 2.11% (3/142) 2.79 0.009455 0.035848
GO:0009165 nucleotide biosynthetic process 2.11% (3/142) 2.79 0.009455 0.035848
GO:0032774 RNA biosynthetic process 2.82% (4/142) 2.29 0.00942 0.036236
GO:0009201 ribonucleoside triphosphate biosynthetic process 1.41% (2/142) 3.78 0.009349 0.036494
GO:0009142 nucleoside triphosphate biosynthetic process 1.41% (2/142) 3.78 0.009349 0.036494
GO:0071702 organic substance transport 4.23% (6/142) 1.75 0.009419 0.0365
GO:0010628 positive regulation of gene expression 0.7% (1/142) 6.32 0.012431 0.041201
GO:0004106 chorismate mutase activity 0.7% (1/142) 6.32 0.012431 0.041201
GO:0043243 positive regulation of protein-containing complex disassembly 0.7% (1/142) 6.32 0.012431 0.041201
GO:0046417 chorismate metabolic process 0.7% (1/142) 6.32 0.012431 0.041201
GO:0006449 regulation of translational termination 0.7% (1/142) 6.32 0.012431 0.041201
GO:0034551 mitochondrial respiratory chain complex III assembly 0.7% (1/142) 6.32 0.012431 0.041201
GO:0034250 positive regulation of amide metabolic process 0.7% (1/142) 6.32 0.012431 0.041201
GO:0019692 deoxyribose phosphate metabolic process 0.7% (1/142) 6.32 0.012431 0.041201
GO:0009265 2'-deoxyribonucleotide biosynthetic process 0.7% (1/142) 6.32 0.012431 0.041201
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) 0.7% (1/142) 6.32 0.012431 0.041201
GO:0009394 2'-deoxyribonucleotide metabolic process 0.7% (1/142) 6.32 0.012431 0.041201
GO:0045727 positive regulation of translation 0.7% (1/142) 6.32 0.012431 0.041201
GO:0017062 respiratory chain complex III assembly 0.7% (1/142) 6.32 0.012431 0.041201
GO:0051130 positive regulation of cellular component organization 0.7% (1/142) 6.32 0.012431 0.041201
GO:0072529 pyrimidine-containing compound catabolic process 0.7% (1/142) 6.32 0.012431 0.041201
GO:0009219 pyrimidine deoxyribonucleotide metabolic process 0.7% (1/142) 6.32 0.012431 0.041201
GO:0045905 positive regulation of translational termination 0.7% (1/142) 6.32 0.012431 0.041201
GO:0045901 positive regulation of translational elongation 0.7% (1/142) 6.32 0.012431 0.041201
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 0.7% (1/142) 6.32 0.012431 0.041201
GO:0046385 deoxyribose phosphate biosynthetic process 0.7% (1/142) 6.32 0.012431 0.041201
GO:0098800 inner mitochondrial membrane protein complex 1.41% (2/142) 3.48 0.013884 0.04573
GO:0043933 protein-containing complex organization 2.82% (4/142) 2.11 0.014087 0.04611
GO:0046483 heterocycle metabolic process 8.45% (12/142) 1.04 0.014498 0.047163
GO:0003743 translation initiation factor activity 1.41% (2/142) 3.42 0.01514 0.048948
GO:1901137 carbohydrate derivative biosynthetic process 2.11% (3/142) 2.53 0.015493 0.049784
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (142) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms