Coexpression cluster: Cluster_214 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 23.88% (16/67) 2.24 0.0 3.6e-05
GO:0009058 biosynthetic process 22.39% (15/67) 2.39 0.0 4.9e-05
GO:0008152 metabolic process 44.78% (30/67) 1.27 1e-06 8.4e-05
GO:0071704 organic substance metabolic process 43.28% (29/67) 1.31 1e-06 0.000101
GO:0044238 primary metabolic process 40.3% (27/67) 1.33 2e-06 0.000131
GO:1901576 organic substance biosynthetic process 19.4% (13/67) 2.31 2e-06 0.000148
GO:0044237 cellular metabolic process 34.33% (23/67) 1.48 2e-06 0.000151
GO:0044249 cellular biosynthetic process 17.91% (12/67) 2.32 4e-06 0.000229
GO:0009987 cellular process 43.28% (29/67) 1.16 7e-06 0.000325
GO:0006807 nitrogen compound metabolic process 34.33% (23/67) 1.38 8e-06 0.000349
GO:0043603 amide metabolic process 10.45% (7/67) 3.14 1.5e-05 0.000585
GO:0000036 acyl carrier activity 2.99% (2/67) 7.67 3.8e-05 0.001026
GO:0044620 ACP phosphopantetheine attachment site binding 2.99% (2/67) 7.67 3.8e-05 0.001026
GO:0140414 phosphopantetheine-dependent carrier activity 2.99% (2/67) 7.67 3.8e-05 0.001026
GO:0051192 prosthetic group binding 2.99% (2/67) 7.67 3.8e-05 0.001026
GO:0008150 biological_process 56.72% (38/67) 0.81 3.5e-05 0.001249
GO:0003735 structural constituent of ribosome 8.96% (6/67) 3.17 5.5e-05 0.001328
GO:0043170 macromolecule metabolic process 29.85% (20/67) 1.35 5.2e-05 0.001335
GO:0006518 peptide metabolic process 8.96% (6/67) 3.1 7.2e-05 0.001648
GO:0140098 catalytic activity, acting on RNA 8.96% (6/67) 3.08 7.8e-05 0.00169
GO:0046483 heterocycle metabolic process 16.42% (11/67) 2.0 8.5e-05 0.001753
GO:0140640 catalytic activity, acting on a nucleic acid 10.45% (7/67) 2.7 0.0001 0.001976
GO:0006725 cellular aromatic compound metabolic process 16.42% (11/67) 1.96 0.000106 0.001991
GO:0005198 structural molecule activity 8.96% (6/67) 2.97 0.00012 0.002091
GO:0051604 protein maturation 4.48% (3/67) 4.99 0.000117 0.002123
GO:1901360 organic cyclic compound metabolic process 16.42% (11/67) 1.92 0.000135 0.002255
GO:0044271 cellular nitrogen compound biosynthetic process 11.94% (8/67) 2.39 0.000143 0.002292
GO:0044281 small molecule metabolic process 11.94% (8/67) 2.37 0.000156 0.002411
GO:0002098 tRNA wobble uridine modification 2.99% (2/67) 6.67 0.000169 0.002531
GO:0006139 nucleobase-containing compound metabolic process 14.93% (10/67) 1.99 0.000189 0.002728
GO:0002097 tRNA wobble base modification 2.99% (2/67) 6.53 0.000206 0.00289
GO:0009059 macromolecule biosynthetic process 10.45% (7/67) 2.5 0.000238 0.003225
GO:0009451 RNA modification 5.97% (4/67) 3.71 0.000257 0.003384
GO:0006082 organic acid metabolic process 8.96% (6/67) 2.64 0.000404 0.004618
GO:0043436 oxoacid metabolic process 8.96% (6/67) 2.64 0.0004 0.004692
GO:0006633 fatty acid biosynthetic process 4.48% (3/67) 4.41 0.000391 0.004719
GO:0019752 carboxylic acid metabolic process 8.96% (6/67) 2.65 0.000387 0.004801
GO:1901566 organonitrogen compound biosynthetic process 10.45% (7/67) 2.39 0.000376 0.004805
GO:0006412 translation 7.46% (5/67) 2.95 0.000485 0.005395
GO:0043043 peptide biosynthetic process 7.46% (5/67) 2.92 0.000533 0.005509
GO:0032787 monocarboxylic acid metabolic process 5.97% (4/67) 3.44 0.000521 0.005518
GO:0072330 monocarboxylic acid biosynthetic process 4.48% (3/67) 4.27 0.000514 0.005576
GO:0043604 amide biosynthetic process 7.46% (5/67) 2.81 0.000754 0.007275
GO:0090304 nucleic acid metabolic process 11.94% (8/67) 2.02 0.000771 0.007279
GO:0034660 ncRNA metabolic process 5.97% (4/67) 3.3 0.000747 0.007371
GO:0044255 cellular lipid metabolic process 7.46% (5/67) 2.81 0.000745 0.00752
GO:1901564 organonitrogen compound metabolic process 23.88% (16/67) 1.22 0.000985 0.009091
GO:0140104 molecular carrier activity 2.99% (2/67) 5.29 0.001197 0.010601
GO:0006631 fatty acid metabolic process 4.48% (3/67) 3.86 0.001175 0.010623
GO:0003697 single-stranded DNA binding 2.99% (2/67) 5.24 0.001291 0.011206
GO:0006399 tRNA metabolic process 4.48% (3/67) 3.6 0.001981 0.016222
GO:0001054 RNA polymerase I activity 1.49% (1/67) 8.99 0.001963 0.016385
GO:0001056 RNA polymerase III activity 1.49% (1/67) 8.99 0.001963 0.016385
GO:0016485 protein processing 2.99% (2/67) 4.91 0.002045 0.016437
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 2.99% (2/67) 4.86 0.002166 0.017095
GO:0034470 ncRNA processing 4.48% (3/67) 3.45 0.002671 0.020703
GO:0003676 nucleic acid binding 19.4% (13/67) 1.25 0.002731 0.020792
GO:0006400 tRNA modification 2.99% (2/67) 4.67 0.002822 0.021117
GO:0003723 RNA binding 8.96% (6/67) 2.08 0.002995 0.02203
GO:0005840 ribosome 5.97% (4/67) 2.73 0.00319 0.023077
GO:0016070 RNA metabolic process 8.96% (6/67) 2.05 0.00329 0.023405
GO:0009651 response to salt stress 1.49% (1/67) 7.99 0.003922 0.023977
GO:0004164 diphthine synthase activity 1.49% (1/67) 7.99 0.003922 0.023977
GO:0070037 rRNA (pseudouridine) methyltransferase activity 1.49% (1/67) 7.99 0.003922 0.023977
GO:0006970 response to osmotic stress 1.49% (1/67) 7.99 0.003922 0.023977
GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity 1.49% (1/67) 7.99 0.003922 0.023977
GO:0004156 dihydropteroate synthase activity 1.49% (1/67) 7.99 0.003922 0.023977
GO:0006434 seryl-tRNA aminoacylation 1.49% (1/67) 7.99 0.003922 0.023977
GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity 1.49% (1/67) 7.99 0.003922 0.023977
GO:0004828 serine-tRNA ligase activity 1.49% (1/67) 7.99 0.003922 0.023977
GO:0015698 inorganic anion transport 2.99% (2/67) 4.5 0.003559 0.024915
GO:1990904 ribonucleoprotein complex 4.48% (3/67) 3.19 0.004456 0.026858
GO:0005762 mitochondrial large ribosomal subunit 1.49% (1/67) 7.41 0.005878 0.031888
GO:0000315 organellar large ribosomal subunit 1.49% (1/67) 7.41 0.005878 0.031888
GO:0031177 phosphopantetheine binding 1.49% (1/67) 7.41 0.005878 0.031888
GO:0006627 protein processing involved in protein targeting to mitochondrion 1.49% (1/67) 7.41 0.005878 0.031888
GO:0034982 mitochondrial protein processing 1.49% (1/67) 7.41 0.005878 0.031888
GO:0016882 cyclo-ligase activity 1.49% (1/67) 7.41 0.005878 0.031888
GO:0003724 RNA helicase activity 2.99% (2/67) 4.19 0.00546 0.032024
GO:0008186 ATP-dependent activity, acting on RNA 2.99% (2/67) 4.19 0.00546 0.032024
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 2.99% (2/67) 4.09 0.006244 0.033049
GO:0006629 lipid metabolic process 7.46% (5/67) 2.1 0.006207 0.033255
GO:0005575 cellular_component 20.9% (14/67) 1.05 0.006436 0.033654
GO:0008033 tRNA processing 2.99% (2/67) 4.02 0.006864 0.035463
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 2.99% (2/67) 3.95 0.00751 0.038346
GO:0072341 modified amino acid binding 1.49% (1/67) 6.99 0.00783 0.038615
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine 1.49% (1/67) 6.99 0.00783 0.038615
GO:0033588 elongator holoenzyme complex 1.49% (1/67) 6.99 0.00783 0.038615
GO:0016053 organic acid biosynthetic process 4.48% (3/67) 2.88 0.008027 0.03871
GO:0046394 carboxylic acid biosynthetic process 4.48% (3/67) 2.88 0.008027 0.03871
GO:0043232 intracellular non-membrane-bounded organelle 5.97% (4/67) 2.33 0.008321 0.039251
GO:0043228 non-membrane-bounded organelle 5.97% (4/67) 2.33 0.008321 0.039251
GO:0003674 molecular_function 64.18% (43/67) 0.39 0.008828 0.041199
GO:0015098 molybdate ion transmembrane transporter activity 1.49% (1/67) 6.67 0.009778 0.042436
GO:0072546 EMC complex 1.49% (1/67) 6.67 0.009778 0.042436
GO:0015689 molybdate ion transport 1.49% (1/67) 6.67 0.009778 0.042436
GO:0034227 tRNA thio-modification 1.49% (1/67) 6.67 0.009778 0.042436
GO:0044391 ribosomal subunit 2.99% (2/67) 3.78 0.009362 0.043225
GO:0043229 intracellular organelle 8.96% (6/67) 1.72 0.00977 0.044169
GO:0043226 organelle 8.96% (6/67) 1.72 0.00977 0.044169
GO:0098656 monoatomic anion transmembrane transport 1.49% (1/67) 6.41 0.011722 0.049876
GO:1990547 mitochondrial phosphate ion transmembrane transport 1.49% (1/67) 6.41 0.011722 0.049876
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (67) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms