Coexpression cluster: Cluster_2382 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0008150 biological_process 57.14% (44/77) 1.04 0.0 1.9e-05
GO:0005575 cellular_component 46.75% (36/77) 1.23 0.0 2.2e-05
GO:0009987 cellular process 45.45% (35/77) 1.3 0.0 2.9e-05
GO:0071704 organic substance metabolic process 37.66% (29/77) 1.3 1e-06 0.000207
GO:0032991 protein-containing complex 19.48% (15/77) 2.07 2e-06 0.000256
GO:0008152 metabolic process 37.66% (29/77) 1.23 4e-06 0.000371
GO:0044237 cellular metabolic process 31.17% (24/77) 1.41 5e-06 0.000385
GO:0045492 xylan biosynthetic process 3.9% (3/77) 6.37 7e-06 0.000535
GO:0051641 cellular localization 10.39% (8/77) 2.97 9e-06 0.000571
GO:0043413 macromolecule glycosylation 5.19% (4/77) 4.53 3e-05 0.001166
GO:0006486 protein glycosylation 5.19% (4/77) 4.53 3e-05 0.001166
GO:0099023 vesicle tethering complex 5.19% (4/77) 4.67 2.1e-05 0.001212
GO:0110165 cellular anatomical entity 37.66% (29/77) 1.09 2.6e-05 0.001261
GO:0045491 xylan metabolic process 3.9% (3/77) 5.71 2.9e-05 0.001291
GO:1903189 glyoxal metabolic process 2.6% (2/77) 7.86 3.6e-05 0.001294
GO:0070085 glycosylation 5.19% (4/77) 4.44 3.9e-05 0.001321
GO:0006807 nitrogen compound metabolic process 29.87% (23/77) 1.31 2.5e-05 0.001334
GO:0044238 primary metabolic process 32.47% (25/77) 1.17 4.8e-05 0.001545
GO:0070592 cell wall polysaccharide biosynthetic process 3.9% (3/77) 5.38 5.7e-05 0.001738
GO:0046907 intracellular transport 7.79% (6/77) 3.07 8.7e-05 0.002521
GO:0010410 hemicellulose metabolic process 3.9% (3/77) 5.12 9.7e-05 0.002684
GO:0051649 establishment of localization in cell 7.79% (6/77) 3.02 0.000104 0.002757
GO:0048193 Golgi vesicle transport 5.19% (4/77) 4.02 0.000117 0.002955
GO:0043226 organelle 22.08% (17/77) 1.44 0.000131 0.003034
GO:0043229 intracellular organelle 22.08% (17/77) 1.44 0.00013 0.003156
GO:0010383 cell wall polysaccharide metabolic process 3.9% (3/77) 4.92 0.000146 0.003253
GO:0010413 glucuronoxylan metabolic process 2.6% (2/77) 6.75 0.000167 0.003349
GO:0010417 glucuronoxylan biosynthetic process 2.6% (2/77) 6.75 0.000167 0.003349
GO:0043170 macromolecule metabolic process 25.97% (20/77) 1.25 0.000167 0.003587
GO:0098796 membrane protein complex 6.49% (5/77) 3.22 0.000217 0.004193
GO:0044036 cell wall macromolecule metabolic process 3.9% (3/77) 4.68 0.000236 0.004421
GO:0016192 vesicle-mediated transport 6.49% (5/77) 2.99 0.000446 0.007847
GO:0003674 molecular_function 54.55% (42/77) 0.63 0.000444 0.00807
GO:0044249 cellular biosynthetic process 11.69% (9/77) 1.96 0.000518 0.008366
GO:0006906 vesicle fusion 2.6% (2/77) 5.94 0.000514 0.008531
GO:1901564 organonitrogen compound metabolic process 20.78% (16/77) 1.33 0.000507 0.008672
GO:0046522 S-methyl-5-thioribose kinase activity 1.3% (1/77) 10.61 0.000641 0.010058
GO:0009834 plant-type secondary cell wall biogenesis 2.6% (2/77) 5.72 0.00069 0.010557
GO:0005770 late endosome 2.6% (2/77) 5.7 0.000714 0.010632
GO:0042147 retrograde transport, endosome to Golgi 2.6% (2/77) 5.68 0.000733 0.010641
GO:0006082 organic acid metabolic process 7.79% (6/77) 2.42 0.00095 0.011997
GO:0016482 cytosolic transport 2.6% (2/77) 5.47 0.000978 0.012088
GO:0043436 oxoacid metabolic process 7.79% (6/77) 2.42 0.000946 0.012214
GO:0043231 intracellular membrane-bounded organelle 18.18% (14/77) 1.37 0.000864 0.012247
GO:1901576 organic substance biosynthetic process 11.69% (9/77) 1.83 0.000939 0.012393
GO:0019752 carboxylic acid metabolic process 7.79% (6/77) 2.42 0.000932 0.012597
GO:0043227 membrane-bounded organelle 18.18% (14/77) 1.36 0.00093 0.012859
GO:0098876 vesicle-mediated transport to the plasma membrane 2.6% (2/77) 5.36 0.001125 0.013617
GO:0046423 allene-oxide cyclase activity 1.3% (1/77) 9.76 0.001153 0.013667
GO:0009058 biosynthetic process 11.69% (9/77) 1.76 0.001345 0.015023
GO:0000271 polysaccharide biosynthetic process 3.9% (3/77) 3.82 0.001306 0.015173
GO:0090174 organelle membrane fusion 2.6% (2/77) 5.24 0.001332 0.015179
GO:1903607 cytochrome c biosynthetic process 1.3% (1/77) 9.23 0.001664 0.016674
GO:1903606 cytochrome c metabolic process 1.3% (1/77) 9.23 0.001664 0.016674
GO:1903605 cytochrome biosynthetic process 1.3% (1/77) 9.23 0.001664 0.016674
GO:1903604 cytochrome metabolic process 1.3% (1/77) 9.23 0.001664 0.016674
GO:0006892 post-Golgi vesicle-mediated transport 2.6% (2/77) 5.12 0.00157 0.017216
GO:0048284 organelle fusion 2.6% (2/77) 5.04 0.001761 0.017344
GO:0030906 retromer, cargo-selective complex 1.3% (1/77) 9.12 0.001792 0.017357
GO:0061025 membrane fusion 2.6% (2/77) 5.08 0.001647 0.01772
GO:0098588 bounding membrane of organelle 5.19% (4/77) 2.94 0.001938 0.018462
GO:0009977 proton motive force dependent protein transmembrane transporter activity 1.3% (1/77) 8.93 0.002048 0.018889
GO:0033281 TAT protein transport complex 1.3% (1/77) 8.93 0.002048 0.018889
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum 2.6% (2/77) 4.87 0.002207 0.019424
GO:0006081 cellular aldehyde metabolic process 2.6% (2/77) 4.88 0.002182 0.019507
GO:0060628 regulation of ER to Golgi vesicle-mediated transport 1.3% (1/77) 8.84 0.002176 0.019755
GO:0016757 glycosyltransferase activity 6.49% (5/77) 2.45 0.002327 0.020181
GO:1901360 organic cyclic compound metabolic process 14.29% (11/77) 1.43 0.002427 0.020733
GO:0048588 developmental cell growth 1.3% (1/77) 8.47 0.002815 0.022406
GO:0009932 cell tip growth 1.3% (1/77) 8.47 0.002815 0.022406
GO:0009860 pollen tube growth 1.3% (1/77) 8.47 0.002815 0.022406
GO:0009846 pollen germination 1.3% (1/77) 8.47 0.002815 0.022406
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity 1.3% (1/77) 8.54 0.002687 0.022629
GO:0051234 establishment of localization 11.69% (9/77) 1.59 0.002969 0.023003
GO:0048280 vesicle fusion with Golgi apparatus 1.3% (1/77) 8.41 0.002943 0.023106
GO:0002100 tRNA wobble adenosine to inosine editing 1.3% (1/77) 8.29 0.003199 0.024452
GO:0016051 carbohydrate biosynthetic process 3.9% (3/77) 3.34 0.003361 0.025364
GO:0009695 jasmonic acid biosynthetic process 1.3% (1/77) 8.12 0.003582 0.026679
GO:0019520 aldonic acid metabolic process 1.3% (1/77) 7.98 0.003965 0.027099
GO:0019521 D-gluconate metabolic process 1.3% (1/77) 7.98 0.003965 0.027099
GO:0046177 D-gluconate catabolic process 1.3% (1/77) 7.98 0.003965 0.027099
GO:0046176 aldonic acid catabolic process 1.3% (1/77) 7.98 0.003965 0.027099
GO:0043953 protein transport by the Tat complex 1.3% (1/77) 8.07 0.003709 0.02728
GO:0051179 localization 11.69% (9/77) 1.54 0.003781 0.027456
GO:0005976 polysaccharide metabolic process 3.9% (3/77) 3.24 0.0041 0.0277
GO:0019538 protein metabolic process 15.58% (12/77) 1.26 0.003932 0.028205
GO:0012506 vesicle membrane 2.6% (2/77) 4.37 0.004356 0.028757
GO:0030659 cytoplasmic vesicle membrane 2.6% (2/77) 4.37 0.004356 0.028757
GO:0003856 3-dehydroquinate synthase activity 1.3% (1/77) 7.68 0.004858 0.031712
GO:0016050 vesicle organization 2.6% (2/77) 4.26 0.004989 0.032209
GO:0030904 retromer complex 1.3% (1/77) 7.57 0.00524 0.033093
GO:0046483 heterocycle metabolic process 12.99% (10/77) 1.37 0.005216 0.033302
GO:0000139 Golgi membrane 2.6% (2/77) 4.2 0.00545 0.03405
GO:0140534 endoplasmic reticulum protein-containing complex 2.6% (2/77) 4.17 0.005663 0.034272
GO:0005697 telomerase holoenzyme complex 1.3% (1/77) 7.47 0.005623 0.034387
GO:0000956 nuclear-transcribed mRNA catabolic process 2.6% (2/77) 4.14 0.005866 0.034426
GO:0006382 adenosine to inosine editing 1.3% (1/77) 7.44 0.00575 0.034441
GO:0016197 endosomal transport 2.6% (2/77) 4.15 0.005853 0.034702
GO:0005783 endoplasmic reticulum 3.9% (3/77) 3.07 0.005619 0.034729
GO:0070939 Dsl1/NZR complex 1.3% (1/77) 7.38 0.006005 0.034888
GO:0008251 tRNA-specific adenosine deaminase activity 1.3% (1/77) 7.35 0.006132 0.035275
GO:0070034 telomerase RNA binding 1.3% (1/77) 7.32 0.00626 0.035655
GO:1901678 iron coordination entity transport 1.3% (1/77) 7.26 0.006514 0.036046
GO:0015886 heme transport 1.3% (1/77) 7.26 0.006514 0.036046
GO:0015232 heme transmembrane transporter activity 1.3% (1/77) 7.26 0.006514 0.036046
GO:0008373 sialyltransferase activity 1.3% (1/77) 7.23 0.006642 0.036403
GO:0031418 L-ascorbic acid binding 1.3% (1/77) 7.12 0.007151 0.038827
GO:0009975 cyclase activity 1.3% (1/77) 7.1 0.007278 0.039152
GO:0042759 long-chain fatty acid biosynthetic process 1.3% (1/77) 7.0 0.007787 0.039684
GO:0046394 carboxylic acid biosynthetic process 3.9% (3/77) 2.9 0.007781 0.040005
GO:0016053 organic acid biosynthetic process 3.9% (3/77) 2.9 0.007781 0.040005
GO:0003824 catalytic activity 29.87% (23/77) 0.72 0.00811 0.040273
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 2.6% (2/77) 3.91 0.00799 0.040366
GO:0031090 organelle membrane 5.19% (4/77) 2.35 0.008082 0.040481
GO:0006810 transport 10.39% (8/77) 1.49 0.007769 0.040663
GO:0071840 cellular component organization or biogenesis 9.09% (7/77) 1.62 0.00772 0.040776
GO:0004000 adenosine deaminase activity 1.3% (1/77) 6.91 0.008295 0.040843
GO:0009832 plant-type cell wall biogenesis 2.6% (2/77) 3.94 0.007697 0.041028
GO:0042646 plastid nucleoid 1.3% (1/77) 6.82 0.008803 0.041583
GO:0032324 molybdopterin cofactor biosynthetic process 1.3% (1/77) 6.82 0.008803 0.041583
GO:0051189 prosthetic group metabolic process 1.3% (1/77) 6.82 0.008803 0.041583
GO:0043545 molybdopterin cofactor metabolic process 1.3% (1/77) 6.82 0.008803 0.041583
GO:0042644 chloroplast nucleoid 1.3% (1/77) 6.82 0.008803 0.041583
GO:0006402 mRNA catabolic process 2.6% (2/77) 3.83 0.008898 0.04169
GO:0016071 mRNA metabolic process 3.9% (3/77) 2.75 0.010237 0.043413
GO:0031543 peptidyl-proline dioxygenase activity 1.3% (1/77) 6.61 0.0102 0.043574
GO:0019511 peptidyl-proline hydroxylation 1.3% (1/77) 6.61 0.0102 0.043574
GO:0034058 endosomal vesicle fusion 1.3% (1/77) 6.56 0.01058 0.043908
GO:0008541 proteasome regulatory particle, lid subcomplex 1.3% (1/77) 6.56 0.01058 0.043908
GO:0071669 plant-type cell wall organization or biogenesis 2.6% (2/77) 3.73 0.01016 0.04405
GO:0004656 procollagen-proline 4-dioxygenase activity 1.3% (1/77) 6.64 0.009946 0.044112
GO:0019798 procollagen-proline dioxygenase activity 1.3% (1/77) 6.64 0.009946 0.044112
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline 1.3% (1/77) 6.64 0.009946 0.044112
GO:0031545 peptidyl-proline 4-dioxygenase activity 1.3% (1/77) 6.64 0.009946 0.044112
GO:0019471 4-hydroxyproline metabolic process 1.3% (1/77) 6.64 0.009946 0.044112
GO:0044281 small molecule metabolic process 7.79% (6/77) 1.71 0.010137 0.044284
GO:0009051 pentose-phosphate shunt, oxidative branch 1.3% (1/77) 6.63 0.010073 0.044336
GO:0042546 cell wall biogenesis 2.6% (2/77) 3.7 0.010575 0.04452
GO:0032386 regulation of intracellular transport 1.3% (1/77) 6.66 0.009819 0.045277
GO:1990414 replication-born double-strand break repair via sister chromatid exchange 1.3% (1/77) 6.66 0.009819 0.045277
GO:0043412 macromolecule modification 12.99% (10/77) 1.2 0.011145 0.045602
GO:0032787 monocarboxylic acid metabolic process 3.9% (3/77) 2.71 0.011097 0.045727
GO:0071705 nitrogen compound transport 5.19% (4/77) 2.21 0.011296 0.045895
GO:0004535 poly(A)-specific ribonuclease activity 1.3% (1/77) 6.38 0.011974 0.048312
GO:0051668 localization within membrane 2.6% (2/77) 3.6 0.012129 0.048601
GO:0006401 RNA catabolic process 2.6% (2/77) 3.59 0.012272 0.048836
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (77) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms