Coexpression cluster: Cluster_2409 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043227 membrane-bounded organelle 27.14% (19/70) 1.94 0.0 0.000141
GO:0043226 organelle 27.14% (19/70) 1.73 2e-06 0.000306
GO:0043231 intracellular membrane-bounded organelle 25.71% (18/70) 1.87 1e-06 0.000309
GO:0043229 intracellular organelle 27.14% (19/70) 1.73 2e-06 0.000407
GO:0005575 cellular_component 42.86% (30/70) 1.1 1.1e-05 0.001265
GO:0009987 cellular process 40.0% (28/70) 1.12 2.1e-05 0.001968
GO:0110165 cellular anatomical entity 38.57% (27/70) 1.13 3e-05 0.002355
GO:0016050 vesicle organization 4.29% (3/70) 4.99 0.000126 0.00536
GO:0030658 transport vesicle membrane 2.86% (2/70) 7.01 0.000116 0.005367
GO:0098796 membrane protein complex 7.14% (5/70) 3.35 0.000138 0.005465
GO:0030662 coated vesicle membrane 2.86% (2/70) 7.06 0.000109 0.005508
GO:0012507 ER to Golgi transport vesicle membrane 2.86% (2/70) 7.06 0.000109 0.005508
GO:0003674 molecular_function 57.14% (40/70) 0.69 0.000162 0.005991
GO:0008150 biological_process 48.57% (34/70) 0.8 0.000181 0.00627
GO:0030659 cytoplasmic vesicle membrane 4.29% (3/70) 5.09 0.000102 0.0063
GO:0012506 vesicle membrane 4.29% (3/70) 5.09 0.000102 0.0063
GO:0005634 nucleus 14.29% (10/70) 1.95 0.000248 0.007638
GO:0061650 ubiquitin-like protein conjugating enzyme activity 2.86% (2/70) 6.49 0.000239 0.007797
GO:0018193 peptidyl-amino acid modification 5.71% (4/70) 3.59 0.000363 0.009581
GO:0006906 vesicle fusion 2.86% (2/70) 6.07 0.000425 0.00981
GO:0032991 protein-containing complex 15.71% (11/70) 1.76 0.00036 0.009973
GO:0070647 protein modification by small protein conjugation or removal 7.14% (5/70) 3.0 0.000423 0.01018
GO:0005484 SNAP receptor activity 2.86% (2/70) 6.11 0.000405 0.010208
GO:0006672 ceramide metabolic process 2.86% (2/70) 6.2 0.000358 0.010447
GO:0031201 SNARE complex 2.86% (2/70) 5.94 0.000508 0.011257
GO:0005789 endoplasmic reticulum membrane 4.29% (3/70) 4.23 0.000581 0.012383
GO:0030148 sphingolipid biosynthetic process 2.86% (2/70) 5.55 0.000869 0.017835
GO:0030328 prenylcysteine catabolic process 1.43% (1/70) 9.75 0.001164 0.018971
GO:0030329 prenylcysteine metabolic process 1.43% (1/70) 9.75 0.001164 0.018971
GO:0061024 membrane organization 4.29% (3/70) 3.91 0.001107 0.019162
GO:0090174 organelle membrane fusion 2.86% (2/70) 5.38 0.001103 0.019716
GO:0043687 post-translational protein modification 7.14% (5/70) 2.7 0.00107 0.019757
GO:0030327 prenylated protein catabolic process 1.43% (1/70) 9.9 0.001048 0.020018
GO:0001735 prenylcysteine oxidase activity 1.43% (1/70) 9.9 0.001048 0.020018
GO:0042219 cellular modified amino acid catabolic process 1.43% (1/70) 9.48 0.001397 0.020917
GO:0035339 SPOTS complex 1.43% (1/70) 9.37 0.001513 0.020959
GO:0090156 intracellular sphingolipid homeostasis 1.43% (1/70) 9.37 0.001513 0.020959
GO:0061025 membrane fusion 2.86% (2/70) 5.22 0.001364 0.020993
GO:0048284 organelle fusion 2.86% (2/70) 5.17 0.001459 0.021271
GO:0006665 sphingolipid metabolic process 2.86% (2/70) 5.23 0.001347 0.021316
GO:0006575 cellular modified amino acid metabolic process 2.86% (2/70) 5.08 0.001664 0.022491
GO:0033699 DNA 5'-adenosine monophosphate hydrolase activity 1.43% (1/70) 9.16 0.001746 0.022493
GO:1990165 single-strand break-containing DNA binding 1.43% (1/70) 9.16 0.001746 0.022493
GO:0061656 SUMO conjugating enzyme activity 1.43% (1/70) 8.98 0.001978 0.02491
GO:0010008 endosome membrane 2.86% (2/70) 4.8 0.002435 0.02932
GO:0051641 cellular localization 7.14% (5/70) 2.43 0.002418 0.02977
GO:0016043 cellular component organization 10.0% (7/70) 1.92 0.002531 0.029835
GO:0016192 vesicle-mediated transport 5.71% (4/70) 2.8 0.002682 0.030326
GO:0031982 vesicle 4.29% (3/70) 3.43 0.002817 0.030596
GO:0048280 vesicle fusion with Golgi apparatus 1.43% (1/70) 8.54 0.002676 0.030883
GO:0000012 single strand break repair 1.43% (1/70) 8.48 0.002792 0.030935
GO:0030301 cholesterol transport 1.43% (1/70) 8.37 0.003024 0.031027
GO:0032367 intracellular cholesterol transport 1.43% (1/70) 8.37 0.003024 0.031027
GO:0030674 protein-macromolecule adaptor activity 2.86% (2/70) 4.66 0.002926 0.031171
GO:0046907 intracellular transport 5.71% (4/70) 2.62 0.004202 0.031885
GO:0006996 organelle organization 7.14% (5/70) 2.34 0.003181 0.032037
GO:0030410 nicotianamine synthase activity 1.43% (1/70) 7.9 0.004185 0.032202
GO:0030417 nicotianamine metabolic process 1.43% (1/70) 7.9 0.004185 0.032202
GO:0030418 nicotianamine biosynthetic process 1.43% (1/70) 7.9 0.004185 0.032202
GO:0072351 tricarboxylic acid biosynthetic process 1.43% (1/70) 7.9 0.004185 0.032202
GO:0017059 serine C-palmitoyltransferase complex 1.43% (1/70) 8.07 0.003721 0.032209
GO:0002178 palmitoyltransferase complex 1.43% (1/70) 8.07 0.003721 0.032209
GO:0031211 endoplasmic reticulum palmitoyltransferase complex 1.43% (1/70) 8.07 0.003721 0.032209
GO:0005783 endoplasmic reticulum 4.29% (3/70) 3.21 0.004306 0.03224
GO:0006810 transport 11.43% (8/70) 1.62 0.004373 0.0323
GO:0019789 SUMO transferase activity 1.43% (1/70) 7.98 0.003953 0.032686
GO:0017040 N-acylsphingosine amidohydrolase activity 1.43% (1/70) 8.02 0.003837 0.032703
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain 1.43% (1/70) 8.21 0.003373 0.03278
GO:0101005 deubiquitinase activity 2.86% (2/70) 4.28 0.004853 0.032789
GO:0006897 endocytosis 2.86% (2/70) 4.57 0.003316 0.032801
GO:0005516 calmodulin binding 2.86% (2/70) 4.3 0.004737 0.032801
GO:0000209 protein polyubiquitination 2.86% (2/70) 4.45 0.003909 0.032815
GO:1901564 organonitrogen compound metabolic process 18.57% (13/70) 1.16 0.00463 0.032884
GO:0060090 molecular adaptor activity 2.86% (2/70) 4.29 0.004821 0.032975
GO:0046514 ceramide catabolic process 1.43% (1/70) 7.78 0.004533 0.033044
GO:0071840 cellular component organization or biogenesis 10.0% (7/70) 1.76 0.004594 0.033051
GO:0051649 establishment of localization in cell 5.71% (4/70) 2.57 0.004733 0.033193
GO:0000149 SNARE binding 2.86% (2/70) 4.49 0.003691 0.033518
GO:0004843 cysteine-type deubiquitinase activity 2.86% (2/70) 4.4 0.004134 0.033679
GO:0033180 proton-transporting V-type ATPase, V1 domain 1.43% (1/70) 7.61 0.005113 0.03372
GO:0019787 ubiquitin-like protein transferase activity 4.29% (3/70) 3.13 0.005064 0.033803
GO:0006082 organic acid metabolic process 7.14% (5/70) 2.29 0.003666 0.033854
GO:0018209 peptidyl-serine modification 2.86% (2/70) 4.13 0.005997 0.033901
GO:0018105 peptidyl-serine phosphorylation 2.86% (2/70) 4.13 0.005997 0.033901
GO:0044237 cellular metabolic process 22.86% (16/70) 0.96 0.006311 0.034278
GO:0043436 oxoacid metabolic process 7.14% (5/70) 2.29 0.003654 0.034312
GO:0008152 metabolic process 28.57% (20/70) 0.83 0.005826 0.034338
GO:0019783 ubiquitin-like protein peptidase activity 2.86% (2/70) 4.08 0.006391 0.034373
GO:0055037 recycling endosome 1.43% (1/70) 7.31 0.006271 0.034398
GO:0046466 membrane lipid catabolic process 1.43% (1/70) 7.31 0.006271 0.034398
GO:0030149 sphingolipid catabolic process 1.43% (1/70) 7.31 0.006271 0.034398
GO:0019752 carboxylic acid metabolic process 7.14% (5/70) 2.29 0.00361 0.034485
GO:0016053 organic acid biosynthetic process 4.29% (3/70) 3.04 0.005981 0.034516
GO:0046394 carboxylic acid biosynthetic process 4.29% (3/70) 3.04 0.005981 0.034516
GO:0005750 mitochondrial respiratory chain complex III 1.43% (1/70) 7.42 0.005808 0.034598
GO:0045275 respiratory chain complex III 1.43% (1/70) 7.42 0.005808 0.034598
GO:0031418 L-ascorbic acid binding 1.43% (1/70) 7.26 0.006503 0.034639
GO:0016579 protein deubiquitination 2.86% (2/70) 4.2 0.005445 0.034671
GO:0098657 import into cell 2.86% (2/70) 4.19 0.005512 0.034703
GO:0016755 aminoacyltransferase activity 4.29% (3/70) 3.09 0.005397 0.034769
GO:0032366 intracellular sterol transport 1.43% (1/70) 7.54 0.005345 0.034834
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 2.86% (2/70) 4.05 0.006647 0.035072
GO:0031090 organelle membrane 5.71% (4/70) 2.49 0.00579 0.035252
GO:0019842 vitamin binding 2.86% (2/70) 4.04 0.006771 0.035388
GO:0051234 establishment of localization 11.43% (8/70) 1.56 0.005698 0.035468
GO:0140096 catalytic activity, acting on a protein 14.29% (10/70) 1.34 0.005774 0.035543
GO:0045944 positive regulation of transcription by RNA polymerase II 2.86% (2/70) 3.97 0.00738 0.035864
GO:0005737 cytoplasm 10.0% (7/70) 1.63 0.007339 0.03598
GO:0070646 protein modification by small protein removal 2.86% (2/70) 3.96 0.007471 0.035989
GO:0042759 long-chain fatty acid biosynthetic process 1.43% (1/70) 7.14 0.007081 0.035991
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c 1.43% (1/70) 7.14 0.007081 0.035991
GO:0046467 membrane lipid biosynthetic process 2.86% (2/70) 3.98 0.007315 0.036185
GO:0016574 histone ubiquitination 1.43% (1/70) 7.11 0.007197 0.036246
GO:0006542 glutamine biosynthetic process 1.43% (1/70) 7.09 0.007313 0.036497
GO:0051179 localization 11.43% (8/70) 1.51 0.007057 0.036538
GO:0016211 ammonia ligase activity 1.43% (1/70) 6.96 0.008006 0.03791
GO:0004356 glutamine synthetase activity 1.43% (1/70) 6.96 0.008006 0.03791
GO:0016925 protein sumoylation 1.43% (1/70) 6.9 0.008353 0.039216
GO:0006997 nucleus organization 1.43% (1/70) 6.86 0.008584 0.039302
GO:0004656 procollagen-proline 4-dioxygenase activity 1.43% (1/70) 6.78 0.009046 0.03946
GO:0019798 procollagen-proline dioxygenase activity 1.43% (1/70) 6.78 0.009046 0.03946
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline 1.43% (1/70) 6.78 0.009046 0.03946
GO:0031545 peptidyl-proline 4-dioxygenase activity 1.43% (1/70) 6.78 0.009046 0.03946
GO:0019471 4-hydroxyproline metabolic process 1.43% (1/70) 6.78 0.009046 0.03946
GO:0004527 exonuclease activity 2.86% (2/70) 3.86 0.008558 0.039509
GO:0006643 membrane lipid metabolic process 2.86% (2/70) 3.86 0.00853 0.039712
GO:0019511 peptidyl-proline hydroxylation 1.43% (1/70) 6.75 0.009277 0.03984
GO:0031543 peptidyl-proline dioxygenase activity 1.43% (1/70) 6.75 0.009277 0.03984
GO:0055038 recycling endosome membrane 1.43% (1/70) 6.8 0.00893 0.040553
GO:0015918 sterol transport 1.43% (1/70) 6.62 0.010084 0.042975
GO:0032588 trans-Golgi network membrane 1.43% (1/70) 6.56 0.010546 0.04426
GO:0003824 catalytic activity 30.0% (21/70) 0.73 0.010523 0.044501
GO:1901566 organonitrogen compound biosynthetic process 5.71% (4/70) 2.2 0.011396 0.047468
GO:0018126 protein hydroxylation 1.43% (1/70) 6.38 0.011928 0.049314
GO:0016880 acid-ammonia (or amide) ligase activity 1.43% (1/70) 6.34 0.012273 0.049996
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (70) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms