Coexpression cluster: Cluster_883 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 51.72% (45/87) 1.2 0.0 1e-06
GO:0003723 RNA binding 16.09% (14/87) 2.87 0.0 2e-06
GO:0003676 nucleic acid binding 24.14% (21/87) 1.88 0.0 1.9e-05
GO:0110165 cellular anatomical entity 41.38% (36/87) 1.23 0.0 1.9e-05
GO:0005575 cellular_component 44.83% (39/87) 1.16 0.0 2.3e-05
GO:0003674 molecular_function 62.07% (54/87) 0.81 0.0 2.8e-05
GO:0097159 organic cyclic compound binding 35.63% (31/87) 1.31 1e-06 4.3e-05
GO:0017101 aminoacyl-tRNA synthetase multienzyme complex 3.45% (3/87) 7.47 1e-06 4.5e-05
GO:0005737 cytoplasm 14.94% (13/87) 2.21 4e-06 0.000209
GO:0005829 cytosol 10.34% (9/87) 2.87 4e-06 0.000231
GO:0031072 heat shock protein binding 3.45% (3/87) 5.95 1.8e-05 0.000756
GO:0022627 cytosolic small ribosomal subunit 3.45% (3/87) 5.73 2.8e-05 0.001088
GO:0008150 biological_process 48.28% (42/87) 0.8 4e-05 0.001465
GO:0044391 ribosomal subunit 4.6% (4/87) 4.39 4.4e-05 0.001486
GO:0004815 aspartate-tRNA ligase activity 2.3% (2/87) 7.53 5.7e-05 0.001688
GO:0006422 aspartyl-tRNA aminoacylation 2.3% (2/87) 7.53 5.7e-05 0.001688
GO:0015935 small ribosomal subunit 3.45% (3/87) 5.31 6.6e-05 0.001841
GO:0043228 non-membrane-bounded organelle 8.05% (7/87) 2.69 0.000116 0.00274
GO:0043232 intracellular non-membrane-bounded organelle 8.05% (7/87) 2.69 0.000116 0.002882
GO:0009057 macromolecule catabolic process 6.9% (6/87) 2.93 0.000147 0.002898
GO:0003735 structural constituent of ribosome 4.6% (4/87) 3.99 0.00013 0.00292
GO:0003729 mRNA binding 5.75% (5/87) 3.35 0.000142 0.002921
GO:1990904 ribonucleoprotein complex 6.9% (6/87) 3.01 0.000112 0.002935
GO:0007098 centrosome cycle 2.3% (2/87) 6.8 0.000156 0.002955
GO:0070652 HAUS complex 2.3% (2/87) 6.87 0.000141 0.003042
GO:0005689 U12-type spliceosomal complex 2.3% (2/87) 6.7 0.00018 0.003268
GO:0031023 microtubule organizing center organization 2.3% (2/87) 6.6 0.000205 0.003339
GO:0043226 organelle 20.69% (18/87) 1.34 0.000201 0.003401
GO:0043229 intracellular organelle 20.69% (18/87) 1.34 0.000201 0.003523
GO:0051603 proteolysis involved in protein catabolic process 5.75% (5/87) 3.18 0.000245 0.003859
GO:0003924 GTPase activity 4.6% (4/87) 3.73 0.000255 0.003896
GO:0030544 Hsp70 protein binding 2.3% (2/87) 6.4 0.000273 0.004031
GO:0051254 positive regulation of RNA metabolic process 4.6% (4/87) 3.62 0.000338 0.004851
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 4.6% (4/87) 3.54 0.000416 0.005787
GO:0043167 ion binding 22.99% (20/87) 1.16 0.000454 0.006136
GO:0031593 polyubiquitin modification-dependent protein binding 2.3% (2/87) 6.01 0.000467 0.006138
GO:1901564 organonitrogen compound metabolic process 19.54% (17/87) 1.24 0.000726 0.007156
GO:0031331 positive regulation of cellular catabolic process 2.3% (2/87) 5.69 0.000723 0.007276
GO:0061014 positive regulation of mRNA catabolic process 2.3% (2/87) 5.69 0.000723 0.007276
GO:0071826 protein-RNA complex organization 3.45% (3/87) 4.1 0.000755 0.007293
GO:0005198 structural molecule activity 4.6% (4/87) 3.27 0.000843 0.007386
GO:0097526 spliceosomal tri-snRNP complex 2.3% (2/87) 5.85 0.000581 0.007428
GO:0031325 positive regulation of cellular metabolic process 4.6% (4/87) 3.27 0.000837 0.007468
GO:0071010 prespliceosome 2.3% (2/87) 5.59 0.000822 0.007478
GO:0071004 U2-type prespliceosome 2.3% (2/87) 5.59 0.000822 0.007478
GO:1901575 organic substance catabolic process 8.05% (7/87) 2.22 0.000795 0.007522
GO:0022607 cellular component assembly 5.75% (5/87) 2.84 0.00072 0.007565
GO:0043488 regulation of mRNA stability 2.3% (2/87) 5.54 0.000886 0.007618
GO:0000976 transcription cis-regulatory region binding 4.6% (4/87) 3.33 0.000714 0.007679
GO:0001067 transcription regulatory region nucleic acid binding 4.6% (4/87) 3.33 0.000714 0.007679
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 3.45% (3/87) 3.98 0.00096 0.007696
GO:0072686 mitotic spindle 2.3% (2/87) 5.49 0.000946 0.007712
GO:0022618 protein-RNA complex assembly 3.45% (3/87) 4.15 0.000692 0.007798
GO:1990837 sequence-specific double-stranded DNA binding 4.6% (4/87) 3.22 0.000942 0.007821
GO:0061013 regulation of mRNA catabolic process 2.3% (2/87) 5.51 0.000927 0.007834
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.45% (3/87) 3.91 0.001096 0.007852
GO:0004812 aminoacyl-tRNA ligase activity 3.45% (3/87) 3.91 0.001096 0.007852
GO:0019941 modification-dependent protein catabolic process 4.6% (4/87) 3.2 0.000996 0.007854
GO:0061157 mRNA destabilization 2.3% (2/87) 5.73 0.000686 0.007915
GO:0140030 modification-dependent protein binding 2.3% (2/87) 5.73 0.000686 0.007915
GO:0050779 RNA destabilization 2.3% (2/87) 5.73 0.000686 0.007915
GO:0043632 modification-dependent macromolecule catabolic process 4.6% (4/87) 3.14 0.00116 0.007949
GO:0043039 tRNA aminoacylation 3.45% (3/87) 3.89 0.001156 0.00804
GO:0043487 regulation of RNA stability 2.3% (2/87) 5.39 0.001091 0.00806
GO:0000987 cis-regulatory region sequence-specific DNA binding 3.45% (3/87) 3.89 0.001149 0.00811
GO:0006418 tRNA aminoacylation for protein translation 3.45% (3/87) 3.92 0.001086 0.008157
GO:0042026 protein refolding 2.3% (2/87) 5.4 0.001078 0.008221
GO:0009056 catabolic process 8.05% (7/87) 2.15 0.00106 0.008223
GO:0032991 protein-containing complex 13.79% (12/87) 1.57 0.000675 0.008398
GO:0009893 positive regulation of metabolic process 4.6% (4/87) 3.05 0.00146 0.008422
GO:0010468 regulation of gene expression 10.34% (9/87) 1.75 0.001482 0.008445
GO:0043038 amino acid activation 3.45% (3/87) 3.84 0.001268 0.008445
GO:0031903 microbody membrane 2.3% (2/87) 5.2 0.001403 0.008507
GO:0005778 peroxisomal membrane 2.3% (2/87) 5.2 0.001403 0.008507
GO:0010604 positive regulation of macromolecule metabolic process 4.6% (4/87) 3.05 0.001457 0.008508
GO:0006508 proteolysis 6.9% (6/87) 2.28 0.00153 0.008515
GO:0000226 microtubule cytoskeleton organization 3.45% (3/87) 3.73 0.001567 0.008522
GO:0010556 regulation of macromolecule biosynthetic process 10.34% (9/87) 1.74 0.001552 0.008536
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 3.45% (3/87) 3.75 0.001517 0.00854
GO:0016862 intramolecular oxidoreductase activity, interconverting keto- and enol-groups 1.15% (1/87) 9.43 0.001447 0.008554
GO:0050178 phenylpyruvate tautomerase activity 1.15% (1/87) 9.43 0.001447 0.008554
GO:1903313 positive regulation of mRNA metabolic process 2.3% (2/87) 5.28 0.001266 0.008557
GO:0048522 positive regulation of cellular process 4.6% (4/87) 3.09 0.00131 0.008604
GO:0046872 metal ion binding 10.34% (9/87) 1.76 0.001389 0.008643
GO:0051173 positive regulation of nitrogen compound metabolic process 4.6% (4/87) 3.07 0.001388 0.008754
GO:0005840 ribosome 3.45% (3/87) 3.8 0.001381 0.008825
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 3.45% (3/87) 3.66 0.001803 0.008886
GO:0006082 organic acid metabolic process 6.9% (6/87) 2.24 0.001789 0.008906
GO:0051252 regulation of RNA metabolic process 9.2% (8/87) 1.9 0.001378 0.008927
GO:0043169 cation binding 10.34% (9/87) 1.72 0.001665 0.008947
GO:0043436 oxoacid metabolic process 6.9% (6/87) 2.24 0.001782 0.008964
GO:0019219 regulation of nucleobase-containing compound metabolic process 9.2% (8/87) 1.85 0.001763 0.008968
GO:0009889 regulation of biosynthetic process 10.34% (9/87) 1.71 0.00176 0.009047
GO:0019752 carboxylic acid metabolic process 6.9% (6/87) 2.24 0.001756 0.009129
GO:0003960 NADPH:quinone reductase activity 1.15% (1/87) 9.05 0.00188 0.00917
GO:0005813 centrosome 2.3% (2/87) 5.05 0.001728 0.009185
GO:0031326 regulation of cellular biosynthetic process 10.34% (9/87) 1.71 0.001751 0.009202
GO:0005875 microtubule associated complex 2.3% (2/87) 4.95 0.001972 0.009518
GO:0004198 calcium-dependent cysteine-type endopeptidase activity 1.15% (1/87) 8.95 0.002025 0.009675
GO:0005815 microtubule organizing center 2.3% (2/87) 4.87 0.002213 0.010466
GO:0051225 spindle assembly 2.3% (2/87) 4.81 0.002399 0.011237
GO:0005684 U2-type spliceosomal complex 2.3% (2/87) 4.79 0.002476 0.011482
GO:0048518 positive regulation of biological process 4.6% (4/87) 2.83 0.002519 0.011569
GO:0051087 protein-folding chaperone binding 2.3% (2/87) 4.73 0.002683 0.012202
GO:0034719 SMN-Sm protein complex 1.15% (1/87) 8.51 0.002747 0.012259
GO:0006357 regulation of transcription by RNA polymerase II 4.6% (4/87) 2.79 0.002774 0.012263
GO:0071013 catalytic step 2 spliceosome 2.3% (2/87) 4.71 0.002743 0.012359
GO:0060255 regulation of macromolecule metabolic process 10.34% (9/87) 1.6 0.002859 0.012407
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.75% (5/87) 2.38 0.002854 0.012499
GO:0030532 small nuclear ribonucleoprotein complex 2.3% (2/87) 4.62 0.003099 0.012635
GO:0006412 translation 3.45% (3/87) 3.39 0.003046 0.012638
GO:0006807 nitrogen compound metabolic process 22.99% (20/87) 0.93 0.003184 0.012654
GO:0031323 regulation of cellular metabolic process 10.34% (9/87) 1.6 0.002976 0.012681
GO:0005819 spindle 2.3% (2/87) 4.66 0.00295 0.012685
GO:0097525 spliceosomal snRNP complex 2.3% (2/87) 4.62 0.003088 0.012701
GO:0043186 P granule 1.15% (1/87) 8.36 0.003036 0.012708
GO:1990726 Lsm1-7-Pat1 complex 1.15% (1/87) 8.29 0.00318 0.012748
GO:1903311 regulation of mRNA metabolic process 2.3% (2/87) 4.64 0.003024 0.01277
GO:1902494 catalytic complex 6.9% (6/87) 2.07 0.003164 0.012792
GO:0099080 supramolecular complex 3.45% (3/87) 3.35 0.003321 0.013091
GO:0007010 cytoskeleton organization 3.45% (3/87) 3.34 0.003408 0.013324
GO:0019222 regulation of metabolic process 10.34% (9/87) 1.55 0.003662 0.014199
GO:0016462 pyrophosphatase activity 5.75% (5/87) 2.28 0.003798 0.014257
GO:0120114 Sm-like protein family complex 2.3% (2/87) 4.48 0.003716 0.014291
GO:0031329 regulation of cellular catabolic process 2.3% (2/87) 4.47 0.003787 0.014329
GO:0051171 regulation of nitrogen compound metabolic process 9.2% (8/87) 1.67 0.003772 0.01439
GO:0003690 double-stranded DNA binding 4.6% (4/87) 2.65 0.003993 0.014416
GO:0043043 peptide biosynthetic process 3.45% (3/87) 3.27 0.003876 0.014435
GO:0140101 catalytic activity, acting on a tRNA 3.45% (3/87) 3.25 0.004049 0.014507
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.75% (5/87) 2.26 0.00408 0.014509
GO:0005525 GTP binding 3.45% (3/87) 3.25 0.003992 0.014525
GO:0032561 guanyl ribonucleotide binding 3.45% (3/87) 3.25 0.003992 0.014525
GO:0080090 regulation of primary metabolic process 9.2% (8/87) 1.65 0.003991 0.014749
GO:0016817 hydrolase activity, acting on acid anhydrides 5.75% (5/87) 2.25 0.004246 0.014876
GO:0071840 cellular component organization or biogenesis 9.2% (8/87) 1.64 0.004235 0.014951
GO:0019001 guanyl nucleotide binding 3.45% (3/87) 3.21 0.004338 0.014976
GO:0005688 U6 snRNP 1.15% (1/87) 7.85 0.004334 0.015074
GO:0044281 small molecule metabolic process 8.05% (7/87) 1.76 0.004766 0.016101
GO:0006520 amino acid metabolic process 4.6% (4/87) 2.58 0.004736 0.016115
GO:0009896 positive regulation of catabolic process 2.3% (2/87) 4.31 0.004721 0.016181
GO:0007017 microtubule-based process 3.45% (3/87) 3.14 0.004999 0.01677
GO:0140694 non-membrane-bounded organelle assembly 2.3% (2/87) 4.25 0.005121 0.017059
GO:0010005 cortical microtubule, transverse to long axis 1.15% (1/87) 7.58 0.005199 0.017196
GO:0007051 spindle organization 2.3% (2/87) 4.2 0.005467 0.017956
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 3.45% (3/87) 3.03 0.00612 0.019963
GO:0006518 peptide metabolic process 3.45% (3/87) 3.01 0.00632 0.020475
GO:0004450 isocitrate dehydrogenase (NADP+) activity 1.15% (1/87) 7.26 0.006494 0.020897
GO:0034641 cellular nitrogen compound metabolic process 12.64% (11/87) 1.24 0.006661 0.021146
GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity 1.15% (1/87) 7.23 0.006638 0.021216
GO:0006511 ubiquitin-dependent protein catabolic process 3.45% (3/87) 2.92 0.007483 0.023596
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 3.45% (3/87) 2.9 0.007876 0.024673
GO:0140535 intracellular protein-containing complex 4.6% (4/87) 2.36 0.00794 0.024708
GO:0043604 amide biosynthetic process 3.45% (3/87) 2.88 0.008179 0.025287
GO:0016043 cellular component organization 8.05% (7/87) 1.6 0.00839 0.025771
GO:0004017 adenylate kinase activity 1.15% (1/87) 6.82 0.008793 0.026834
GO:0140603 obsolete ATP hydrolysis activity 1.15% (1/87) 6.71 0.009511 0.028837
GO:0006399 tRNA metabolic process 3.45% (3/87) 2.78 0.009832 0.029065
GO:0005687 U4 snRNP 1.15% (1/87) 6.67 0.009798 0.029146
GO:0006102 isocitrate metabolic process 1.15% (1/87) 6.67 0.009798 0.029146
GO:0004448 isocitrate dehydrogenase [NAD(P)+] activity 1.15% (1/87) 6.67 0.009798 0.029146
GO:0019773 proteasome core complex, alpha-subunit complex 1.15% (1/87) 6.6 0.010228 0.029498
GO:0004825 methionine-tRNA ligase activity 1.15% (1/87) 6.6 0.010228 0.029498
GO:0006431 methionyl-tRNA aminoacylation 1.15% (1/87) 6.6 0.010228 0.029498
GO:1902652 secondary alcohol metabolic process 1.15% (1/87) 6.58 0.010371 0.02973
GO:0070925 organelle assembly 2.3% (2/87) 3.73 0.010193 0.029946
GO:0001731 formation of translation preinitiation complex 1.15% (1/87) 6.56 0.010514 0.02996
GO:0045944 positive regulation of transcription by RNA polymerase II 2.3% (2/87) 3.66 0.011201 0.031726
GO:0070402 NADPH binding 1.15% (1/87) 6.45 0.011374 0.032022
GO:0005874 microtubule 2.3% (2/87) 3.63 0.011672 0.032667
GO:0065003 protein-containing complex assembly 3.45% (3/87) 2.67 0.011957 0.033075
GO:0043565 sequence-specific DNA binding 4.6% (4/87) 2.19 0.011907 0.033129
GO:0009894 regulation of catabolic process 2.3% (2/87) 3.58 0.012455 0.03425
GO:0009987 cellular process 28.74% (25/87) 0.64 0.012543 0.034294
GO:0042579 microbody 2.3% (2/87) 3.56 0.012762 0.034691
GO:0000398 mRNA splicing, via spliceosome 2.3% (2/87) 3.54 0.01303 0.035219
GO:0016034 maleylacetoacetate isomerase activity 1.15% (1/87) 6.21 0.013376 0.035948
GO:0099512 supramolecular fiber 2.3% (2/87) 3.5 0.013809 0.036489
GO:0099081 supramolecular polymer 2.3% (2/87) 3.5 0.013809 0.036489
GO:0043622 cortical microtubule organization 1.15% (1/87) 6.15 0.013947 0.03665
GO:0099513 polymeric cytoskeletal fiber 2.3% (2/87) 3.5 0.013745 0.036731
GO:0005682 U5 snRNP 1.15% (1/87) 6.14 0.01409 0.036821
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.3% (2/87) 3.46 0.014433 0.037509
GO:0000375 RNA splicing, via transesterification reactions 2.3% (2/87) 3.35 0.016745 0.043281
GO:0017076 purine nucleotide binding 13.79% (12/87) 0.99 0.017117 0.043765
GO:0055028 cortical microtubule 1.15% (1/87) 5.86 0.017084 0.043916
GO:0008152 metabolic process 25.29% (22/87) 0.66 0.017721 0.045066
GO:0043603 amide metabolic process 3.45% (3/87) 2.45 0.017819 0.045072
GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity 1.15% (1/87) 5.77 0.018222 0.045845
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process 1.15% (1/87) 5.68 0.019358 0.04794
GO:0006559 L-phenylalanine catabolic process 1.15% (1/87) 5.68 0.019358 0.04794
GO:0005839 proteasome core complex 1.15% (1/87) 5.69 0.019216 0.048092
GO:0016874 ligase activity 3.45% (3/87) 2.39 0.019852 0.048906
GO:0005681 spliceosomal complex 2.3% (2/87) 3.2 0.020398 0.04948
GO:0051879 Hsp90 protein binding 1.15% (1/87) 5.61 0.02021 0.049531
GO:0071704 organic substance metabolic process 24.14% (21/87) 0.66 0.020317 0.049537
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (87) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms