Coexpression cluster: Cluster_59 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 61.8% (55/89) 0.81 0.0 9e-05
GO:0044281 small molecule metabolic process 14.61% (13/89) 2.62 0.0 0.000104
GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity 3.37% (3/89) 7.32 1e-06 0.00018
GO:0004470 malic enzyme activity 3.37% (3/89) 6.89 3e-06 0.000265
GO:0003824 catalytic activity 39.33% (35/89) 1.12 2e-06 0.00029
GO:0016615 malate dehydrogenase activity 3.37% (3/89) 6.41 7e-06 0.000515
GO:0006108 malate metabolic process 3.37% (3/89) 6.45 6e-06 0.00055
GO:0051287 NAD binding 4.49% (4/89) 5.0 9e-06 0.000559
GO:1901564 organonitrogen compound metabolic process 23.6% (21/89) 1.51 1e-05 0.000568
GO:0051119 sugar transmembrane transporter activity 3.37% (3/89) 5.92 1.9e-05 0.000977
GO:0008643 carbohydrate transport 3.37% (3/89) 5.74 2.7e-05 0.001293
GO:0008152 metabolic process 33.71% (30/89) 1.07 3.3e-05 0.001444
GO:0071704 organic substance metabolic process 32.58% (29/89) 1.09 3.6e-05 0.00147
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 5.62% (5/89) 3.73 4.1e-05 0.001546
GO:0006082 organic acid metabolic process 8.99% (8/89) 2.62 5.1e-05 0.001576
GO:0043436 oxoacid metabolic process 8.99% (8/89) 2.62 5.1e-05 0.001665
GO:0019752 carboxylic acid metabolic process 8.99% (8/89) 2.63 5e-05 0.001741
GO:0044237 cellular metabolic process 26.97% (24/89) 1.2 6.7e-05 0.001844
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 5.62% (5/89) 3.6 6.4e-05 0.001857
GO:0009507 chloroplast 5.62% (5/89) 3.21 0.000221 0.005792
GO:0009058 biosynthetic process 12.36% (11/89) 1.84 0.000252 0.006002
GO:0009536 plastid 5.62% (5/89) 3.17 0.00025 0.006245
GO:0006807 nitrogen compound metabolic process 25.84% (23/89) 1.1 0.000287 0.00654
GO:0043648 dicarboxylic acid metabolic process 3.37% (3/89) 4.51 0.000337 0.007054
GO:0044249 cellular biosynthetic process 11.24% (10/89) 1.9 0.000357 0.007191
GO:0015144 carbohydrate transmembrane transporter activity 3.37% (3/89) 4.51 0.000335 0.007324
GO:0008150 biological_process 44.94% (40/89) 0.69 0.000411 0.007971
GO:0044283 small molecule biosynthetic process 5.62% (5/89) 2.87 0.000649 0.012145
GO:1901576 organic substance biosynthetic process 11.24% (10/89) 1.78 0.000683 0.012341
GO:0016757 glycosyltransferase activity 6.74% (6/89) 2.5 0.000713 0.012459
GO:1901566 organonitrogen compound biosynthetic process 6.74% (6/89) 2.44 0.000885 0.014487
GO:0016491 oxidoreductase activity 10.11% (9/89) 1.86 0.00088 0.014881
GO:0006090 pyruvate metabolic process 3.37% (3/89) 3.9 0.001127 0.016867
GO:0006486 protein glycosylation 3.37% (3/89) 3.91 0.001112 0.017144
GO:0043413 macromolecule glycosylation 3.37% (3/89) 3.91 0.001112 0.017144
GO:0070085 glycosylation 3.37% (3/89) 3.81 0.001337 0.019466
GO:0044238 primary metabolic process 26.97% (24/89) 0.91 0.001426 0.0202
GO:1904423 dehydrodolichyl diphosphate synthase complex 1.12% (1/89) 9.4 0.00148 0.020409
GO:0009217 purine deoxyribonucleoside triphosphate catabolic process 1.12% (1/89) 8.91 0.002071 0.020874
GO:0009155 purine deoxyribonucleotide catabolic process 1.12% (1/89) 8.91 0.002071 0.020874
GO:0008832 dGTPase activity 1.12% (1/89) 8.91 0.002071 0.020874
GO:0009146 purine nucleoside triphosphate catabolic process 1.12% (1/89) 8.91 0.002071 0.020874
GO:0046070 dGTP metabolic process 1.12% (1/89) 8.91 0.002071 0.020874
GO:0006203 dGTP catabolic process 1.12% (1/89) 8.91 0.002071 0.020874
GO:0009215 purine deoxyribonucleoside triphosphate metabolic process 1.12% (1/89) 8.91 0.002071 0.020874
GO:0009151 purine deoxyribonucleotide metabolic process 1.12% (1/89) 8.91 0.002071 0.020874
GO:0009200 deoxyribonucleoside triphosphate metabolic process 1.12% (1/89) 8.91 0.002071 0.020874
GO:0016793 triphosphoric monoester hydrolase activity 1.12% (1/89) 8.91 0.002071 0.020874
GO:0009204 deoxyribonucleoside triphosphate catabolic process 1.12% (1/89) 8.91 0.002071 0.020874
GO:0004048 anthranilate phosphoribosyltransferase activity 1.12% (1/89) 9.26 0.001628 0.021873
GO:0019408 dolichol biosynthetic process 1.12% (1/89) 8.81 0.002219 0.021941
GO:0071702 organic substance transport 6.74% (6/89) 2.26 0.001689 0.02213
GO:0046386 deoxyribose phosphate catabolic process 1.12% (1/89) 8.63 0.002515 0.024403
GO:0004157 dihydropyrimidinase activity 1.12% (1/89) 8.55 0.002663 0.025367
GO:0032787 monocarboxylic acid metabolic process 4.49% (4/89) 2.92 0.002043 0.026116
GO:0042586 peptide deformylase activity 1.12% (1/89) 8.47 0.00281 0.026296
GO:0008194 UDP-glycosyltransferase activity 4.49% (4/89) 2.74 0.003142 0.028888
GO:0009443 pyridoxal 5'-phosphate salvage 1.12% (1/89) 8.14 0.003549 0.031516
GO:0008478 pyridoxal kinase activity 1.12% (1/89) 8.14 0.003549 0.031516
GO:0009264 deoxyribonucleotide catabolic process 1.12% (1/89) 7.97 0.003991 0.034285
GO:0005846 nuclear cap binding complex 1.12% (1/89) 7.97 0.003991 0.034285
GO:0043043 peptide biosynthetic process 3.37% (3/89) 3.24 0.004131 0.034912
GO:0009987 cellular process 30.34% (27/89) 0.72 0.004447 0.035846
GO:0098799 outer mitochondrial membrane protein complex 1.12% (1/89) 7.81 0.004434 0.036301
GO:0005742 mitochondrial outer membrane translocase complex 1.12% (1/89) 7.81 0.004434 0.036301
GO:0009143 nucleoside triphosphate catabolic process 1.12% (1/89) 7.55 0.005318 0.039249
GO:0004357 glutamate-cysteine ligase activity 1.12% (1/89) 7.59 0.005171 0.039268
GO:0006091 generation of precursor metabolites and energy 3.37% (3/89) 3.14 0.004966 0.039427
GO:0006520 amino acid metabolic process 4.49% (4/89) 2.54 0.005132 0.039547
GO:0016758 hexosyltransferase activity 4.49% (4/89) 2.53 0.005312 0.039762
GO:0045547 dehydrodolichyl diphosphate synthase activity 1.12% (1/89) 7.51 0.005465 0.039776
GO:0110165 cellular anatomical entity 29.21% (26/89) 0.73 0.005101 0.039894
GO:0050658 RNA transport 2.25% (2/89) 4.08 0.00642 0.042582
GO:0050657 nucleic acid transport 2.25% (2/89) 4.08 0.00642 0.042582
GO:0051236 establishment of RNA localization 2.25% (2/89) 4.08 0.00642 0.042582
GO:0006208 pyrimidine nucleobase catabolic process 1.12% (1/89) 7.29 0.006349 0.043774
GO:0019692 deoxyribose phosphate metabolic process 1.12% (1/89) 7.33 0.006202 0.043915
GO:0009394 2'-deoxyribonucleotide metabolic process 1.12% (1/89) 7.33 0.006202 0.043915
GO:0006405 RNA export from nucleus 2.25% (2/89) 4.09 0.006297 0.043994
GO:0006518 peptide metabolic process 3.37% (3/89) 2.98 0.006729 0.044073
GO:0016094 polyprenol biosynthetic process 1.12% (1/89) 7.14 0.007085 0.044727
GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity 1.12% (1/89) 7.14 0.007085 0.044727
GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity 1.12% (1/89) 7.14 0.007085 0.044727
GO:0042822 pyridoxal phosphate metabolic process 1.12% (1/89) 7.05 0.007526 0.044812
GO:0042823 pyridoxal phosphate biosynthetic process 1.12% (1/89) 7.05 0.007526 0.044812
GO:0046700 heterocycle catabolic process 3.37% (3/89) 2.94 0.007271 0.044822
GO:0044270 cellular nitrogen compound catabolic process 3.37% (3/89) 2.94 0.007271 0.044822
GO:0072529 pyrimidine-containing compound catabolic process 1.12% (1/89) 7.08 0.007379 0.044958
GO:0101005 deubiquitinase activity 2.25% (2/89) 3.94 0.007726 0.044985
GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors 1.12% (1/89) 7.02 0.007673 0.045174
GO:0043604 amide biosynthetic process 3.37% (3/89) 2.84 0.008703 0.048516
GO:0016740 transferase activity 15.73% (14/89) 1.02 0.00846 0.048716
GO:0003989 acetyl-CoA carboxylase activity 1.12% (1/89) 6.81 0.008848 0.048803
GO:0097363 protein O-acetylglucosaminyltransferase activity 1.12% (1/89) 6.84 0.008701 0.049026
GO:0016579 protein deubiquitination 2.25% (2/89) 3.85 0.008658 0.049316
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (89) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms