Coexpression cluster: Cluster_2017 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034657 GID complex 2.74% (2/73) 9.36 4e-06 0.002144
GO:0005575 cellular_component 41.1% (30/73) 1.04 3.1e-05 0.005003
GO:0051668 localization within membrane 5.48% (4/73) 4.67 2.1e-05 0.005045
GO:0072657 protein localization to membrane 4.11% (3/73) 4.7 0.000228 0.005894
GO:0048366 leaf development 2.74% (2/73) 6.56 0.000219 0.005975
GO:0006740 NADPH regeneration 2.74% (2/73) 6.56 0.000219 0.005975
GO:0048827 phyllome development 2.74% (2/73) 6.56 0.000219 0.005975
GO:1901575 organic substance catabolic process 9.59% (7/73) 2.47 0.000273 0.006109
GO:1901564 organonitrogen compound metabolic process 21.92% (16/73) 1.4 0.000269 0.006298
GO:0019707 protein-cysteine S-acyltransferase activity 2.74% (2/73) 6.75 0.000167 0.00633
GO:0019706 protein-cysteine S-palmitoyltransferase activity 2.74% (2/73) 6.75 0.000167 0.00633
GO:0018231 peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine 2.74% (2/73) 6.75 0.000167 0.00633
GO:0018230 peptidyl-L-cysteine S-palmitoylation 2.74% (2/73) 6.75 0.000167 0.00633
GO:0018198 peptidyl-cysteine modification 2.74% (2/73) 6.69 0.000181 0.006346
GO:0004611 phosphoenolpyruvate carboxykinase activity 2.74% (2/73) 6.64 0.000194 0.006377
GO:1901565 organonitrogen compound catabolic process 6.85% (5/73) 3.16 0.00026 0.006398
GO:0005783 endoplasmic reticulum 5.48% (4/73) 3.57 0.000387 0.007321
GO:0018345 protein palmitoylation 2.74% (2/73) 6.1 0.00041 0.007465
GO:0016417 S-acyltransferase activity 2.74% (2/73) 6.15 0.000383 0.007538
GO:0009056 catabolic process 9.59% (7/73) 2.4 0.000368 0.007547
GO:0006511 ubiquitin-dependent protein catabolic process 5.48% (4/73) 3.59 0.000361 0.007721
GO:0019941 modification-dependent protein catabolic process 5.48% (4/73) 3.45 0.000515 0.008171
GO:0006739 NADP metabolic process 2.74% (2/73) 5.91 0.000533 0.008192
GO:0008150 biological_process 46.58% (34/73) 0.74 0.000488 0.008279
GO:0110165 cellular anatomical entity 34.25% (25/73) 0.95 0.000506 0.008296
GO:0043227 membrane-bounded organelle 20.55% (15/73) 1.54 0.000155 0.008468
GO:0006893 Golgi to plasma membrane transport 2.74% (2/73) 5.98 0.000484 0.008503
GO:0051156 glucose 6-phosphate metabolic process 2.74% (2/73) 5.81 0.000609 0.008554
GO:0043231 intracellular membrane-bounded organelle 20.55% (15/73) 1.55 0.000143 0.008771
GO:0046522 S-methyl-5-thioribose kinase activity 1.37% (1/73) 10.69 0.000607 0.008787
GO:0043632 modification-dependent macromolecule catabolic process 5.48% (4/73) 3.4 0.000601 0.008955
GO:0010387 COP9 signalosome assembly 1.37% (1/73) 10.42 0.000729 0.008962
GO:0006895 Golgi to endosome transport 1.37% (1/73) 10.42 0.000729 0.008962
GO:0080147 root hair cell development 1.37% (1/73) 10.42 0.000729 0.008962
GO:0015977 carbon fixation 2.74% (2/73) 6.93 0.00013 0.009157
GO:0008964 phosphoenolpyruvate carboxylase activity 2.74% (2/73) 7.03 0.000114 0.009307
GO:0048856 anatomical structure development 4.11% (3/73) 4.08 0.00079 0.009483
GO:0043226 organelle 20.55% (15/73) 1.33 0.000714 0.009488
GO:0043229 intracellular organelle 20.55% (15/73) 1.33 0.000713 0.009741
GO:0090150 establishment of protein localization to membrane 4.11% (3/73) 5.1 9.9e-05 0.009767
GO:0048468 cell development 1.37% (1/73) 10.2 0.00085 0.009958
GO:0016409 palmitoyltransferase activity 2.74% (2/73) 5.54 0.00088 0.010065
GO:0006098 pentose-phosphate shunt 2.74% (2/73) 7.25 8.3e-05 0.010258
GO:0048046 apoplast 2.74% (2/73) 5.51 0.000924 0.010337
GO:0016054 organic acid catabolic process 4.11% (3/73) 3.94 0.001031 0.010564
GO:0046395 carboxylic acid catabolic process 4.11% (3/73) 3.94 0.001031 0.010564
GO:1902000 homogentisate catabolic process 1.37% (1/73) 9.84 0.001093 0.010753
GO:1901999 homogentisate metabolic process 1.37% (1/73) 9.84 0.001093 0.010753
GO:0099402 plant organ development 2.74% (2/73) 5.35 0.001148 0.010862
GO:0044238 primary metabolic process 28.77% (21/73) 1.0 0.001138 0.010977
GO:0000151 ubiquitin ligase complex 4.11% (3/73) 3.94 0.001029 0.011004
GO:0004334 fumarylacetoacetase activity 1.37% (1/73) 9.69 0.001214 0.011062
GO:0019336 phenol-containing compound catabolic process 1.37% (1/73) 9.69 0.001214 0.011062
GO:0098876 vesicle-mediated transport to the plasma membrane 2.74% (2/73) 5.44 0.001012 0.011066
GO:0051603 proteolysis involved in protein catabolic process 5.48% (4/73) 3.11 0.001238 0.011071
GO:0006099 tricarboxylic acid cycle 2.74% (2/73) 5.24 0.001334 0.01172
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 4.11% (3/73) 3.79 0.001383 0.011933
GO:0006892 post-Golgi vesicle-mediated transport 2.74% (2/73) 5.2 0.001413 0.011989
GO:0006612 protein targeting to membrane 2.74% (2/73) 5.11 0.001585 0.013219
GO:0048193 Golgi vesicle transport 4.11% (3/73) 3.68 0.001717 0.014078
GO:0010498 proteasomal protein catabolic process 4.11% (3/73) 3.66 0.001812 0.014617
GO:0030163 protein catabolic process 4.11% (3/73) 3.53 0.002308 0.018024
GO:0004801 transaldolase activity 1.37% (1/73) 8.76 0.002306 0.018296
GO:0071704 organic substance metabolic process 28.77% (21/73) 0.91 0.002449 0.018823
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity 1.37% (1/73) 8.61 0.002548 0.019286
GO:0032502 developmental process 4.11% (3/73) 3.47 0.002629 0.019303
GO:0044282 small molecule catabolic process 4.11% (3/73) 3.47 0.002596 0.01935
GO:0072329 monocarboxylic acid catabolic process 2.74% (2/73) 4.7 0.002771 0.020046
GO:0043543 protein acylation 2.74% (2/73) 4.66 0.002926 0.020279
GO:0034067 protein localization to Golgi apparatus 1.37% (1/73) 8.42 0.002911 0.020463
GO:0051641 cellular localization 6.85% (5/73) 2.37 0.002905 0.020713
GO:1990498 mitotic spindle microtubule 1.37% (1/73) 8.36 0.003033 0.020723
GO:0019520 aldonic acid metabolic process 1.37% (1/73) 8.05 0.003759 0.021258
GO:0032950 regulation of beta-glucan metabolic process 1.37% (1/73) 8.05 0.003759 0.021258
GO:0051211 anisotropic cell growth 1.37% (1/73) 8.05 0.003759 0.021258
GO:2001006 regulation of cellulose biosynthetic process 1.37% (1/73) 8.05 0.003759 0.021258
GO:0019521 D-gluconate metabolic process 1.37% (1/73) 8.05 0.003759 0.021258
GO:0032885 regulation of polysaccharide biosynthetic process 1.37% (1/73) 8.05 0.003759 0.021258
GO:0032951 regulation of beta-glucan biosynthetic process 1.37% (1/73) 8.05 0.003759 0.021258
GO:0046176 aldonic acid catabolic process 1.37% (1/73) 8.05 0.003759 0.021258
GO:0010330 cellulose synthase complex 1.37% (1/73) 8.05 0.003759 0.021258
GO:0046177 D-gluconate catabolic process 1.37% (1/73) 8.05 0.003759 0.021258
GO:0010962 regulation of glucan biosynthetic process 1.37% (1/73) 8.05 0.003759 0.021258
GO:0005829 cytosol 6.85% (5/73) 2.27 0.003881 0.0217
GO:0016831 carboxy-lyase activity 2.74% (2/73) 4.4 0.004139 0.022379
GO:1901606 alpha-amino acid catabolic process 2.74% (2/73) 4.41 0.004129 0.022571
GO:0045184 establishment of protein localization 5.48% (4/73) 2.71 0.003369 0.022703
GO:0070905 serine binding 1.37% (1/73) 7.61 0.00509 0.022764
GO:0004372 glycine hydroxymethyltransferase activity 1.37% (1/73) 7.61 0.00509 0.022764
GO:0019264 glycine biosynthetic process from serine 1.37% (1/73) 7.61 0.00509 0.022764
GO:0031053 primary miRNA processing 1.37% (1/73) 7.92 0.004122 0.022787
GO:0140535 intracellular protein-containing complex 5.48% (4/73) 2.61 0.004283 0.022905
GO:1901605 alpha-amino acid metabolic process 4.11% (3/73) 3.33 0.00345 0.02294
GO:0071894 histone H2B conserved C-terminal lysine ubiquitination 1.37% (1/73) 7.48 0.005573 0.023041
GO:0031371 ubiquitin conjugating enzyme complex 1.37% (1/73) 7.48 0.005573 0.023041
GO:0000338 protein deneddylation 1.37% (1/73) 7.48 0.005573 0.023041
GO:0033523 histone H2B ubiquitination 1.37% (1/73) 7.48 0.005573 0.023041
GO:0033503 HULC complex 1.37% (1/73) 7.48 0.005573 0.023041
GO:0010390 histone monoubiquitination 1.37% (1/73) 7.48 0.005573 0.023041
GO:0033036 macromolecule localization 5.48% (4/73) 2.55 0.005012 0.023046
GO:0018193 peptidyl-amino acid modification 4.11% (3/73) 3.11 0.005202 0.023057
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain 1.37% (1/73) 8.15 0.003517 0.023071
GO:0070727 cellular macromolecule localization 5.48% (4/73) 2.55 0.004978 0.023105
GO:0009057 macromolecule catabolic process 5.48% (4/73) 2.6 0.004424 0.023158
GO:0006654 phosphatidic acid biosynthetic process 1.37% (1/73) 7.72 0.004727 0.023256
GO:0004623 phospholipase A2 activity 1.37% (1/73) 7.72 0.004727 0.023256
GO:0046473 phosphatidic acid metabolic process 1.37% (1/73) 7.72 0.004727 0.023256
GO:0008152 metabolic process 28.77% (21/73) 0.84 0.004397 0.023261
GO:0043001 Golgi to plasma membrane protein transport 1.37% (1/73) 7.65 0.004969 0.023282
GO:0061951 establishment of protein localization to plasma membrane 1.37% (1/73) 7.65 0.004969 0.023282
GO:1990234 transferase complex 5.48% (4/73) 2.56 0.004846 0.023375
GO:0033180 proton-transporting V-type ATPase, V1 domain 1.37% (1/73) 7.55 0.005331 0.02342
GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity 2.74% (2/73) 4.29 0.004825 0.023502
GO:1990837 sequence-specific double-stranded DNA binding 4.11% (3/73) 3.06 0.005734 0.023511
GO:0008104 protein localization 5.48% (4/73) 2.55 0.004938 0.023586
GO:0006807 nitrogen compound metabolic process 23.29% (17/73) 0.95 0.005434 0.023661
GO:0006497 protein lipidation 2.74% (2/73) 4.49 0.003687 0.023868
GO:0001067 transcription regulatory region nucleic acid binding 4.11% (3/73) 3.17 0.004663 0.023896
GO:0000976 transcription cis-regulatory region binding 4.11% (3/73) 3.17 0.004663 0.023896
GO:0009063 amino acid catabolic process 2.74% (2/73) 4.31 0.004714 0.023911
GO:0042171 lysophosphatidic acid acyltransferase activity 1.37% (1/73) 7.39 0.005935 0.024134
GO:0006565 L-serine catabolic process 1.37% (1/73) 7.36 0.006056 0.024423
GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances 1.37% (1/73) 7.28 0.006418 0.025263
GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds 1.37% (1/73) 7.28 0.006418 0.025263
GO:0043255 regulation of carbohydrate biosynthetic process 1.37% (1/73) 7.28 0.006418 0.025263
GO:0032881 regulation of polysaccharide metabolic process 1.37% (1/73) 7.17 0.006901 0.026947
GO:0046655 folic acid metabolic process 1.37% (1/73) 7.15 0.007022 0.027202
GO:0006605 protein targeting 2.74% (2/73) 3.97 0.007383 0.027943
GO:0051234 establishment of localization 10.96% (8/73) 1.5 0.007329 0.027952
GO:0019538 protein metabolic process 15.07% (11/73) 1.21 0.00728 0.027984
GO:0016574 histone ubiquitination 1.37% (1/73) 7.05 0.007504 0.028184
GO:0035196 miRNA processing 1.37% (1/73) 6.96 0.007986 0.029768
GO:0070646 protein modification by small protein removal 2.74% (2/73) 3.9 0.0081 0.029965
GO:0005874 microtubule 2.74% (2/73) 3.88 0.008341 0.030625
GO:0090522 vesicle tethering involved in exocytosis 1.37% (1/73) 6.84 0.008709 0.031507
GO:0099022 vesicle tethering 1.37% (1/73) 6.84 0.008709 0.031507
GO:0001046 core promoter sequence-specific DNA binding 1.37% (1/73) 6.78 0.009071 0.032106
GO:0050897 cobalt ion binding 1.37% (1/73) 6.8 0.00895 0.032142
GO:0051179 localization 10.96% (8/73) 1.44 0.009043 0.032241
GO:0016597 amino acid binding 1.37% (1/73) 6.76 0.009191 0.0323
GO:0009051 pentose-phosphate shunt, oxidative branch 1.37% (1/73) 6.7 0.009552 0.033331
GO:0099081 supramolecular polymer 2.74% (2/73) 3.75 0.009884 0.03377
GO:0099512 supramolecular fiber 2.74% (2/73) 3.75 0.009884 0.03377
GO:0099023 vesicle tethering complex 2.74% (2/73) 3.74 0.009961 0.033799
GO:0099513 polymeric cytoskeletal fiber 2.74% (2/73) 3.75 0.009838 0.034085
GO:0008180 COP9 signalosome 1.37% (1/73) 6.6 0.010274 0.034154
GO:0009071 serine family amino acid catabolic process 1.37% (1/73) 6.6 0.010274 0.034154
GO:0016830 carbon-carbon lyase activity 2.74% (2/73) 3.73 0.010194 0.034352
GO:0009987 cellular process 30.14% (22/73) 0.71 0.010418 0.0344
GO:0072659 protein localization to plasma membrane 1.37% (1/73) 6.52 0.010875 0.03567
GO:1990778 protein localization to cell periphery 1.37% (1/73) 6.5 0.010995 0.035825
GO:0071617 lysophospholipid acyltransferase activity 1.37% (1/73) 6.48 0.011115 0.035978
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 2.74% (2/73) 3.65 0.011297 0.036327
GO:0006513 protein monoubiquitination 1.37% (1/73) 6.41 0.011716 0.03743
GO:0035999 tetrahydrofolate interconversion 1.37% (1/73) 6.39 0.011836 0.03757
GO:0016746 acyltransferase activity 5.48% (4/73) 2.18 0.012057 0.038026
GO:0005576 extracellular region 2.74% (2/73) 3.57 0.012518 0.039228
GO:0006109 regulation of carbohydrate metabolic process 1.37% (1/73) 6.28 0.012796 0.039595
GO:0000987 cis-regulatory region sequence-specific DNA binding 2.74% (2/73) 3.56 0.012724 0.039622
GO:0007020 microtubule nucleation 1.37% (1/73) 6.25 0.013036 0.040085
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups 4.11% (3/73) 2.62 0.013168 0.04024
GO:0046496 nicotinamide nucleotide metabolic process 2.74% (2/73) 3.51 0.013528 0.041084
GO:0019362 pyridine nucleotide metabolic process 2.74% (2/73) 3.51 0.013634 0.041153
GO:0072524 pyridine-containing compound metabolic process 2.74% (2/73) 3.44 0.014902 0.044707
GO:0006572 tyrosine catabolic process 1.37% (1/73) 6.04 0.015073 0.044943
GO:1901607 alpha-amino acid biosynthetic process 2.74% (2/73) 3.41 0.015367 0.045273
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 2.74% (2/73) 3.42 0.015292 0.045324
GO:0000226 microtubule cytoskeleton organization 2.74% (2/73) 3.4 0.01563 0.045774
GO:0006545 glycine biosynthetic process 1.37% (1/73) 5.96 0.01591 0.045776
GO:0016742 hydroxymethyl-, formyl- and related transferase activity 1.37% (1/73) 5.96 0.01591 0.045776
GO:0022853 active monoatomic ion transmembrane transporter activity 2.74% (2/73) 3.4 0.015762 0.045888
GO:0030008 TRAPP complex 1.37% (1/73) 5.93 0.016269 0.046001
GO:0006559 L-phenylalanine catabolic process 1.37% (1/73) 5.93 0.016269 0.046001
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process 1.37% (1/73) 5.93 0.016269 0.046001
GO:0003690 double-stranded DNA binding 4.11% (3/73) 2.48 0.016831 0.04732
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 2.74% (2/73) 3.33 0.01715 0.047672
GO:0031023 microtubule organizing center organization 1.37% (1/73) 5.86 0.017105 0.047816
GO:0006730 one-carbon metabolic process 1.37% (1/73) 5.8 0.017821 0.048712
GO:1901616 organic hydroxy compound catabolic process 1.37% (1/73) 5.8 0.017821 0.048712
GO:0008652 amino acid biosynthetic process 2.74% (2/73) 3.3 0.017784 0.049154
GO:0016049 cell growth 1.37% (1/73) 5.75 0.018418 0.049517
GO:0005634 nucleus 9.59% (7/73) 1.37 0.018336 0.049568
GO:0046653 tetrahydrofolate metabolic process 1.37% (1/73) 5.76 0.018299 0.04974
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (73) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms