Coexpression cluster: Cluster_1610 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 16.47% (28/170) 1.33 7e-06 0.005143
GO:1990726 Lsm1-7-Pat1 complex 1.18% (2/170) 8.33 1.8e-05 0.006985
GO:0009889 regulation of biosynthetic process 9.41% (16/170) 1.57 0.000112 0.007133
GO:0019222 regulation of metabolic process 10.0% (17/170) 1.5 0.000123 0.007227
GO:0043226 organelle 17.65% (30/170) 1.11 4.9e-05 0.007538
GO:0031326 regulation of cellular biosynthetic process 9.41% (16/170) 1.57 0.000111 0.007717
GO:0140110 transcription regulator activity 6.47% (11/170) 2.02 0.000106 0.008066
GO:0010556 regulation of macromolecule biosynthetic process 9.41% (16/170) 1.6 9.1e-05 0.008664
GO:0050789 regulation of biological process 12.94% (22/170) 1.29 0.000104 0.008832
GO:0010468 regulation of gene expression 9.41% (16/170) 1.61 8.4e-05 0.009161
GO:0043229 intracellular organelle 17.65% (30/170) 1.11 4.9e-05 0.009405
GO:0065007 biological regulation 14.12% (24/170) 1.31 3.8e-05 0.009716
GO:0060255 regulation of macromolecule metabolic process 10.0% (17/170) 1.56 7.9e-05 0.009985
GO:0005575 cellular_component 31.76% (54/170) 0.67 0.000194 0.010594
GO:0097159 organic cyclic compound binding 24.71% (42/170) 0.78 0.000249 0.012656
GO:0031323 regulation of cellular metabolic process 9.41% (16/170) 1.46 0.00027 0.012886
GO:0051252 regulation of RNA metabolic process 7.65% (13/170) 1.64 0.000325 0.013788
GO:0048878 chemical homeostasis 2.94% (5/170) 3.11 0.000324 0.014543
GO:0043231 intracellular membrane-bounded organelle 14.71% (25/170) 1.07 0.000364 0.014623
GO:0043227 membrane-bounded organelle 14.71% (25/170) 1.06 0.000407 0.014781
GO:0042592 homeostatic process 2.94% (5/170) 2.98 0.000484 0.014783
GO:0019219 regulation of nucleobase-containing compound metabolic process 7.65% (13/170) 1.58 0.000471 0.014961
GO:0050794 regulation of cellular process 11.76% (20/170) 1.22 0.000395 0.015087
GO:0080090 regulation of primary metabolic process 8.24% (14/170) 1.5 0.000516 0.01513
GO:0051171 regulation of nitrogen compound metabolic process 8.24% (14/170) 1.51 0.00047 0.015596
GO:0110165 cellular anatomical entity 28.24% (48/170) 0.68 0.000454 0.015735
GO:0003677 DNA binding 8.24% (14/170) 1.48 0.00056 0.015818
GO:0006355 regulation of DNA-templated transcription 7.06% (12/170) 1.6 0.000716 0.017617
GO:2001141 regulation of RNA biosynthetic process 7.06% (12/170) 1.6 0.000716 0.017617
GO:0035770 ribonucleoprotein granule 1.76% (3/170) 4.12 0.000742 0.017683
GO:0003712 transcription coregulator activity 2.35% (4/170) 3.27 0.000864 0.017808
GO:0015772 oligosaccharide transport 0.59% (1/170) 10.2 0.000848 0.017982
GO:0015770 sucrose transport 0.59% (1/170) 10.2 0.000848 0.017982
GO:0006878 intracellular copper ion homeostasis 0.59% (1/170) 10.2 0.000848 0.017982
GO:0015766 disaccharide transport 0.59% (1/170) 10.2 0.000848 0.017982
GO:0036464 cytoplasmic ribonucleoprotein granule 1.76% (3/170) 4.14 0.000711 0.018696
GO:0005488 binding 33.53% (57/170) 0.57 0.000705 0.019198
GO:0009361 succinate-CoA ligase complex (ADP-forming) 0.59% (1/170) 9.79 0.001131 0.021576
GO:0004776 succinate-CoA ligase (GDP-forming) activity 0.59% (1/170) 9.79 0.001131 0.021576
GO:0032574 5'-3' RNA helicase activity 0.59% (1/170) 9.79 0.001131 0.021576
GO:0016054 organic acid catabolic process 2.35% (4/170) 3.14 0.001201 0.021813
GO:0046395 carboxylic acid catabolic process 2.35% (4/170) 3.14 0.001201 0.021813
GO:0003723 RNA binding 6.47% (11/170) 1.55 0.001489 0.025816
GO:0015294 solute:monoatomic cation symporter activity 1.18% (2/170) 5.17 0.001466 0.026021
GO:0098771 inorganic ion homeostasis 1.76% (3/170) 3.65 0.001859 0.030182
GO:0030170 pyridoxal phosphate binding 1.76% (3/170) 3.66 0.001834 0.030426
GO:0070279 vitamin B6 binding 1.76% (3/170) 3.66 0.001834 0.030426
GO:0008150 biological_process 38.24% (65/170) 0.46 0.002074 0.03296
GO:0050313 sulfur dioxygenase activity 0.59% (1/170) 8.47 0.002825 0.03534
GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity 0.59% (1/170) 8.47 0.002825 0.03534
GO:0050993 dimethylallyl diphosphate metabolic process 0.59% (1/170) 8.47 0.002825 0.03534
GO:0050992 dimethylallyl diphosphate biosynthetic process 0.59% (1/170) 8.47 0.002825 0.03534
GO:0070813 hydrogen sulfide metabolic process 0.59% (1/170) 8.47 0.002825 0.03534
GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor 0.59% (1/170) 8.47 0.002825 0.03534
GO:0015291 secondary active transmembrane transporter activity 2.35% (4/170) 2.77 0.003014 0.036498
GO:0003674 molecular_function 45.88% (78/170) 0.38 0.002992 0.036825
GO:0098534 centriole assembly 0.59% (1/170) 8.62 0.002543 0.037316
GO:0005814 centriole 0.59% (1/170) 8.62 0.002543 0.037316
GO:0007099 centriole replication 0.59% (1/170) 8.62 0.002543 0.037316
GO:0015293 symporter activity 1.18% (2/170) 4.81 0.002402 0.037401
GO:0090079 translation regulator activity, nucleic acid binding 1.76% (3/170) 3.46 0.002729 0.038556
GO:0008135 translation factor activity, RNA binding 1.76% (3/170) 3.46 0.002729 0.038556
GO:0099080 supramolecular complex 2.35% (4/170) 2.8 0.002817 0.039075
GO:0019842 vitamin binding 1.76% (3/170) 3.34 0.003418 0.040746
GO:0044282 small molecule catabolic process 2.35% (4/170) 2.67 0.003864 0.044674
GO:0045182 translation regulator activity 1.76% (3/170) 3.28 0.003862 0.045333
GO:0006990 obsolete positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 0.59% (1/170) 7.88 0.004235 0.04752
GO:0016878 acid-thiol ligase activity 1.18% (2/170) 4.4 0.004208 0.047924
GO:0005634 nucleus 8.24% (14/170) 1.16 0.00452 0.048577
GO:0031901 early endosome membrane 0.59% (1/170) 7.79 0.004517 0.049233
GO:0055088 lipid homeostasis 1.18% (2/170) 4.35 0.004455 0.049259
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (170) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms