Coexpression cluster: Cluster_254 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005730 nucleolus 8.33% (8/96) 4.58 0.0 1e-06
GO:0006357 regulation of transcription by RNA polymerase II 8.33% (8/96) 3.65 0.0 3.7e-05
GO:0003676 nucleic acid binding 22.92% (22/96) 1.8 0.0 4.1e-05
GO:0006364 rRNA processing 6.25% (6/96) 4.0 2e-06 0.000152
GO:0006313 DNA transposition 3.12% (3/96) 6.94 2e-06 0.000171
GO:0004803 transposase activity 3.12% (3/96) 6.99 2e-06 0.000193
GO:0016072 rRNA metabolic process 6.25% (6/96) 3.89 4e-06 0.000204
GO:0090560 2-(3-amino-3-carboxypropyl)histidine synthase activity 2.08% (2/96) 8.66 1.2e-05 0.000367
GO:0002151 G-quadruplex RNA binding 2.08% (2/96) 8.7 1.1e-05 0.000374
GO:0071339 MLL1 complex 2.08% (2/96) 8.7 1.1e-05 0.000374
GO:0044665 MLL1/2 complex 2.08% (2/96) 8.7 1.1e-05 0.000374
GO:0003723 RNA binding 11.46% (11/96) 2.38 9e-06 0.000438
GO:0044545 NSL complex 2.08% (2/96) 8.36 1.8e-05 0.000512
GO:0051171 regulation of nitrogen compound metabolic process 12.5% (12/96) 2.11 2.2e-05 0.000603
GO:0080090 regulation of primary metabolic process 12.5% (12/96) 2.1 2.5e-05 0.000617
GO:0043228 non-membrane-bounded organelle 8.33% (8/96) 2.74 3e-05 0.000655
GO:0043232 intracellular non-membrane-bounded organelle 8.33% (8/96) 2.74 3e-05 0.000695
GO:0010468 regulation of gene expression 12.5% (12/96) 2.02 4.2e-05 0.000871
GO:0010556 regulation of macromolecule biosynthetic process 12.5% (12/96) 2.01 4.4e-05 0.00088
GO:0030490 maturation of SSU-rRNA 3.12% (3/96) 5.4 5.5e-05 0.000942
GO:0009889 regulation of biosynthetic process 12.5% (12/96) 1.98 5.3e-05 0.00095
GO:0031326 regulation of cellular biosynthetic process 12.5% (12/96) 1.98 5.3e-05 0.000991
GO:0000123 histone acetyltransferase complex 3.12% (3/96) 5.24 7.6e-05 0.001189
GO:0034470 ncRNA processing 6.25% (6/96) 3.12 7.4e-05 0.001206
GO:0031323 regulation of cellular metabolic process 12.5% (12/96) 1.87 0.000111 0.001493
GO:0008238 exopeptidase activity 4.17% (4/96) 4.0 0.000124 0.001507
GO:1902493 acetyltransferase complex 3.12% (3/96) 5.01 0.000121 0.001513
GO:0031248 protein acetyltransferase complex 3.12% (3/96) 5.01 0.000121 0.001513
GO:0017183 protein histidyl modification to diphthamide 2.08% (2/96) 7.06 0.000109 0.001523
GO:0018202 peptidyl-histidine modification 2.08% (2/96) 7.06 0.000109 0.001523
GO:0060255 regulation of macromolecule metabolic process 12.5% (12/96) 1.88 0.000105 0.001581
GO:0019222 regulation of metabolic process 12.5% (12/96) 1.82 0.000149 0.001752
GO:0030688 preribosome, small subunit precursor 2.08% (2/96) 6.73 0.000172 0.001962
GO:0003729 mRNA binding 5.21% (5/96) 3.21 0.000225 0.002492
GO:0006310 DNA recombination 4.17% (4/96) 3.61 0.000346 0.003617
GO:0019748 secondary metabolic process 3.12% (3/96) 4.5 0.000342 0.003675
GO:0034660 ncRNA metabolic process 6.25% (6/96) 2.64 0.000439 0.00393
GO:0006417 regulation of translation 3.12% (3/96) 4.38 0.000434 0.00398
GO:0034248 regulation of amide metabolic process 3.12% (3/96) 4.38 0.000434 0.00398
GO:0051246 regulation of protein metabolic process 4.17% (4/96) 3.5 0.000468 0.003997
GO:0031011 Ino80 complex 2.08% (2/96) 6.13 0.000395 0.004014
GO:0004185 serine-type carboxypeptidase activity 3.12% (3/96) 4.34 0.000467 0.004082
GO:0006355 regulation of DNA-templated transcription 9.38% (9/96) 2.01 0.00043 0.004144
GO:2001141 regulation of RNA biosynthetic process 9.38% (9/96) 2.01 0.00043 0.004144
GO:1902562 H4 histone acetyltransferase complex 2.08% (2/96) 5.88 0.000553 0.004618
GO:0035097 histone methyltransferase complex 2.08% (2/96) 5.84 0.000584 0.004774
GO:0070008 serine-type exopeptidase activity 3.12% (3/96) 4.2 0.000619 0.004851
GO:0051252 regulation of RNA metabolic process 9.38% (9/96) 1.93 0.000614 0.004912
GO:0043226 organelle 18.75% (18/96) 1.2 0.000706 0.005312
GO:0043229 intracellular organelle 18.75% (18/96) 1.2 0.000706 0.005414
GO:0097346 INO80-type complex 2.08% (2/96) 5.66 0.000754 0.005452
GO:0004180 carboxypeptidase activity 3.12% (3/96) 4.11 0.00074 0.005456
GO:0019219 regulation of nucleobase-containing compound metabolic process 9.38% (9/96) 1.88 0.000811 0.005752
GO:0032196 transposition 3.12% (3/96) 3.99 0.000942 0.006557
GO:0050794 regulation of cellular process 13.54% (13/96) 1.43 0.001075 0.00722
GO:0046483 heterocycle metabolic process 13.54% (13/96) 1.43 0.001062 0.00726
GO:0006396 RNA processing 6.25% (6/96) 2.38 0.001122 0.007271
GO:0019008 molybdopterin synthase complex 1.04% (1/96) 9.8 0.001118 0.007373
GO:0003674 molecular_function 51.04% (49/96) 0.53 0.001165 0.007425
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.08% (2/96) 5.22 0.001365 0.008412
GO:0034708 methyltransferase complex 2.08% (2/96) 5.23 0.001349 0.008452
GO:0070603 SWI/SNF superfamily-type complex 2.08% (2/96) 5.18 0.001446 0.00877
GO:0090304 nucleic acid metabolic process 11.46% (11/96) 1.52 0.0016 0.009254
GO:0061798 GTP 3',8'-cyclase activity 1.04% (1/96) 9.29 0.001596 0.009379
GO:0061799 cyclic pyranopterin monophosphate synthase activity 1.04% (1/96) 9.29 0.001596 0.009379
GO:1901360 organic cyclic compound metabolic process 13.54% (13/96) 1.35 0.001689 0.009476
GO:0050789 regulation of biological process 13.54% (13/96) 1.35 0.00167 0.009516
GO:0034641 cellular nitrogen compound metabolic process 13.54% (13/96) 1.34 0.001813 0.009739
GO:0140535 intracellular protein-containing complex 5.21% (5/96) 2.54 0.001791 0.009762
GO:0030684 preribosome 3.12% (3/96) 3.67 0.001779 0.009836
GO:0003677 DNA binding 9.38% (9/96) 1.67 0.002155 0.011254
GO:0006807 nitrogen compound metabolic process 22.92% (22/96) 0.93 0.002133 0.011294
GO:1904949 ATPase complex 2.08% (2/96) 4.81 0.002383 0.012272
GO:0005488 binding 35.42% (34/96) 0.65 0.002864 0.014552
GO:0010608 post-transcriptional regulation of gene expression 3.12% (3/96) 3.42 0.002921 0.014644
GO:0065007 biological regulation 13.54% (13/96) 1.25 0.003093 0.015304
GO:0140513 nuclear protein-containing complex 6.25% (6/96) 2.07 0.00325 0.015466
GO:0043170 macromolecule metabolic process 20.83% (20/96) 0.94 0.003228 0.015562
GO:0070985 transcription factor TFIIK complex 1.04% (1/96) 8.29 0.00319 0.015578
GO:0140640 catalytic activity, acting on a nucleic acid 7.29% (7/96) 1.85 0.003382 0.015894
GO:0006725 cellular aromatic compound metabolic process 12.5% (12/96) 1.28 0.003869 0.017958
GO:0097159 organic cyclic compound binding 25.0% (24/96) 0.8 0.004074 0.018455
GO:0071949 FAD binding 2.08% (2/96) 4.42 0.004047 0.018557
GO:0008150 biological_process 40.62% (39/96) 0.55 0.004597 0.020577
GO:0032991 protein-containing complex 11.46% (11/96) 1.31 0.004906 0.021701
GO:0006139 nucleobase-containing compound metabolic process 11.46% (11/96) 1.29 0.005466 0.023899
GO:0004049 anthranilate synthase activity 1.04% (1/96) 7.4 0.005894 0.025473
GO:0030692 Noc4p-Nop14p complex 1.04% (1/96) 7.15 0.007005 0.029595
GO:0140097 catalytic activity, acting on DNA 4.17% (4/96) 2.42 0.00693 0.029611
GO:0051536 iron-sulfur cluster binding 2.08% (2/96) 3.96 0.007483 0.030584
GO:0051540 metal cluster binding 2.08% (2/96) 3.96 0.007483 0.030584
GO:0043564 Ku70:Ku80 complex 1.04% (1/96) 7.06 0.007481 0.031254
GO:0017171 serine hydrolase activity 3.12% (3/96) 2.87 0.008229 0.032917
GO:0008236 serine-type peptidase activity 3.12% (3/96) 2.87 0.008229 0.032917
GO:0016070 RNA metabolic process 7.29% (7/96) 1.59 0.009031 0.035743
GO:0019720 Mo-molybdopterin cofactor metabolic process 1.04% (1/96) 6.63 0.010015 0.038038
GO:0006777 Mo-molybdopterin cofactor biosynthetic process 1.04% (1/96) 6.63 0.010015 0.038038
GO:0010104 regulation of ethylene-activated signaling pathway 1.04% (1/96) 6.63 0.010015 0.038038
GO:0070297 regulation of phosphorelay signal transduction system 1.04% (1/96) 6.63 0.010015 0.038038
GO:0005783 endoplasmic reticulum 3.12% (3/96) 2.75 0.010287 0.03868
GO:0032324 molybdopterin cofactor biosynthetic process 1.04% (1/96) 6.5 0.010964 0.039639
GO:0043545 molybdopterin cofactor metabolic process 1.04% (1/96) 6.5 0.010964 0.039639
GO:0051189 prosthetic group metabolic process 1.04% (1/96) 6.5 0.010964 0.039639
GO:0008097 5S rRNA binding 1.04% (1/96) 6.5 0.010964 0.039639
GO:0004371 glycerone kinase activity 1.04% (1/96) 6.44 0.011438 0.040958
GO:0046983 protein dimerization activity 3.12% (3/96) 2.67 0.012089 0.04288
GO:1990234 transferase complex 4.17% (4/96) 2.17 0.01252 0.043995
GO:0045944 positive regulation of transcription by RNA polymerase II 2.08% (2/96) 3.52 0.013507 0.046594
GO:0019405 alditol catabolic process 1.04% (1/96) 6.19 0.013647 0.046647
GO:0019563 glycerol catabolic process 1.04% (1/96) 6.2 0.013489 0.046962
GO:0030689 Noc complex 1.04% (1/96) 6.14 0.01412 0.047828
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (96) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms