Coexpression cluster: Cluster_541 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0042773 ATP synthesis coupled electron transport 2.57% (7/272) 7.71 0.0 0.0
GO:0015453 oxidoreduction-driven active transmembrane transporter activity 2.57% (7/272) 6.56 0.0 0.0
GO:0022904 respiratory electron transport chain 2.57% (7/272) 5.55 0.0 0.0
GO:0009055 electron transfer activity 2.94% (8/272) 4.81 0.0 0.0
GO:0004129 cytochrome-c oxidase activity 1.47% (4/272) 7.55 0.0 1e-06
GO:0016675 oxidoreductase activity, acting on a heme group of donors 1.47% (4/272) 7.55 0.0 1e-06
GO:0022900 electron transport chain 2.57% (7/272) 4.52 0.0 3e-06
GO:0048039 ubiquinone binding 1.1% (3/272) 7.74 0.0 3.3e-05
GO:0015078 proton transmembrane transporter activity 2.57% (7/272) 3.63 2e-06 0.000134
GO:0045271 respiratory chain complex I 1.47% (4/272) 5.55 2e-06 0.000143
GO:0030964 NADH dehydrogenase complex 1.47% (4/272) 5.46 3e-06 0.000149
GO:0042360 vitamin E metabolic process 0.74% (2/272) 9.3 4e-06 0.000174
GO:0010189 vitamin E biosynthetic process 0.74% (2/272) 9.3 4e-06 0.000174
GO:0010276 phytol kinase activity 0.74% (2/272) 9.3 4e-06 0.000174
GO:0003954 NADH dehydrogenase activity 1.47% (4/272) 5.33 4e-06 0.00018
GO:0006812 monoatomic cation transport 3.68% (10/272) 2.74 4e-06 0.000194
GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient 1.1% (3/272) 6.47 6e-06 0.000218
GO:0015990 electron transport coupled proton transport 1.1% (3/272) 6.47 6e-06 0.000218
GO:1904263 positive regulation of TORC1 signaling 0.74% (2/272) 8.79 9e-06 0.000284
GO:1903432 regulation of TORC1 signaling 0.74% (2/272) 8.79 9e-06 0.000284
GO:0035859 Seh1-associated complex 0.74% (2/272) 8.79 9e-06 0.000284
GO:0006091 generation of precursor metabolites and energy 2.94% (8/272) 2.94 1.2e-05 0.00031
GO:0008324 monoatomic cation transmembrane transporter activity 3.68% (10/272) 2.53 1.2e-05 0.000313
GO:0050136 NADH dehydrogenase (quinone) activity 1.1% (3/272) 6.08 1.4e-05 0.000314
GO:0008137 NADH dehydrogenase (ubiquinone) activity 1.1% (3/272) 6.08 1.4e-05 0.000314
GO:0006811 monoatomic ion transport 3.68% (10/272) 2.54 1.2e-05 0.000314
GO:0032008 positive regulation of TOR signaling 0.74% (2/272) 8.65 1.1e-05 0.000316
GO:0032006 regulation of TOR signaling 0.74% (2/272) 8.65 1.1e-05 0.000316
GO:0019005 SCF ubiquitin ligase complex 1.47% (4/272) 4.73 1.9e-05 0.000417
GO:1902533 positive regulation of intracellular signal transduction 0.74% (2/272) 8.11 2.4e-05 0.000453
GO:0033281 TAT protein transport complex 0.74% (2/272) 8.11 2.4e-05 0.000453
GO:0009977 proton motive force dependent protein transmembrane transporter activity 0.74% (2/272) 8.11 2.4e-05 0.000453
GO:1902495 transmembrane transporter complex 1.47% (4/272) 4.67 2.1e-05 0.000462
GO:0098803 respiratory chain complex 1.47% (4/272) 4.65 2.3e-05 0.000478
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 1.47% (4/272) 4.58 2.8e-05 0.000486
GO:0009060 aerobic respiration 1.47% (4/272) 4.63 2.4e-05 0.000489
GO:0045333 cellular respiration 1.47% (4/272) 4.59 2.7e-05 0.00049
GO:0003955 NAD(P)H dehydrogenase (quinone) activity 1.1% (3/272) 5.42 5.3e-05 0.000862
GO:1990351 transporter complex 1.47% (4/272) 4.34 5.2e-05 0.000871
GO:0022857 transmembrane transporter activity 7.35% (20/272) 1.47 5.1e-05 0.000872
GO:1902600 proton transmembrane transport 1.84% (5/272) 3.65 5.9e-05 0.000929
GO:0015075 monoatomic ion transmembrane transporter activity 3.68% (10/272) 2.25 6.1e-05 0.00095
GO:0022884 macromolecule transmembrane transporter activity 1.1% (3/272) 5.22 8e-05 0.001155
GO:0140318 protein transporter activity 1.1% (3/272) 5.23 7.9e-05 0.001161
GO:0008320 protein transmembrane transporter activity 1.1% (3/272) 5.23 7.9e-05 0.001161
GO:0043953 protein transport by the Tat complex 0.74% (2/272) 7.25 8.2e-05 0.001162
GO:0005215 transporter activity 7.35% (20/272) 1.4 9.7e-05 0.001311
GO:0048038 quinone binding 1.1% (3/272) 5.13 9.5e-05 0.00132
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 1.1% (3/272) 5.08 0.000106 0.001409
GO:0015980 energy derivation by oxidation of organic compounds 1.47% (4/272) 4.01 0.000125 0.001623
GO:0071806 protein transmembrane transport 1.47% (4/272) 3.94 0.000152 0.001901
GO:0098796 membrane protein complex 3.31% (9/272) 2.24 0.00015 0.001914
GO:0015318 inorganic molecular entity transmembrane transporter activity 3.31% (9/272) 2.22 0.000167 0.002052
GO:0022890 inorganic cation transmembrane transporter activity 2.94% (8/272) 2.36 0.000207 0.002492
GO:0015886 heme transport 0.74% (2/272) 6.44 0.000256 0.002925
GO:1901678 iron coordination entity transport 0.74% (2/272) 6.44 0.000256 0.002925
GO:0015232 heme transmembrane transporter activity 0.74% (2/272) 6.44 0.000256 0.002925
GO:0022804 active transmembrane transporter activity 3.68% (10/272) 1.97 0.000293 0.003279
GO:0098800 inner mitochondrial membrane protein complex 1.47% (4/272) 3.67 0.000306 0.003374
GO:0005507 copper ion binding 1.47% (4/272) 3.61 0.000359 0.00389
GO:0034198 cellular response to amino acid starvation 0.74% (2/272) 6.06 0.00043 0.004503
GO:1990928 response to amino acid starvation 0.74% (2/272) 6.06 0.00043 0.004503
GO:0016651 oxidoreductase activity, acting on NAD(P)H 1.47% (4/272) 3.52 0.000457 0.004713
GO:1990204 oxidoreductase complex 1.47% (4/272) 3.46 0.000537 0.00545
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 0.74% (2/272) 5.88 0.000554 0.005542
GO:0010647 positive regulation of cell communication 0.74% (2/272) 5.72 0.000694 0.006637
GO:0009967 positive regulation of signal transduction 0.74% (2/272) 5.72 0.000694 0.006637
GO:0023056 positive regulation of signaling 0.74% (2/272) 5.72 0.000694 0.006637
GO:0042362 fat-soluble vitamin biosynthetic process 0.74% (2/272) 5.63 0.000779 0.007232
GO:0006775 fat-soluble vitamin metabolic process 0.74% (2/272) 5.63 0.000779 0.007232
GO:0022853 active monoatomic ion transmembrane transporter activity 1.84% (5/272) 2.82 0.000802 0.007344
GO:0031080 nuclear pore outer ring 0.74% (2/272) 5.52 0.000905 0.00817
GO:0031461 cullin-RING ubiquitin ligase complex 1.47% (4/272) 3.11 0.001289 0.011476
GO:0015399 primary active transmembrane transporter activity 2.57% (7/272) 2.12 0.001321 0.011603
GO:0000454 snoRNA guided rRNA pseudouridine synthesis 0.37% (1/272) 9.52 0.001357 0.011763
GO:0055085 transmembrane transport 5.15% (14/272) 1.34 0.001524 0.013038
GO:0098798 mitochondrial protein-containing complex 1.47% (4/272) 3.02 0.001629 0.013753
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 0.74% (2/272) 4.93 0.002042 0.017016
GO:0015986 proton motive force-driven ATP synthesis 0.74% (2/272) 4.72 0.002725 0.0216
GO:0006754 ATP biosynthetic process 0.74% (2/272) 4.72 0.002725 0.0216
GO:0031071 cysteine desulfurase activity 0.37% (1/272) 8.52 0.002713 0.022041
GO:0006826 iron ion transport 0.74% (2/272) 4.73 0.002693 0.02216
GO:0030150 protein import into mitochondrial matrix 0.74% (2/272) 4.64 0.003018 0.023075
GO:0048831 regulation of shoot system development 0.74% (2/272) 4.65 0.002984 0.023093
GO:0009909 regulation of flower development 0.74% (2/272) 4.65 0.002984 0.023093
GO:0030163 protein catabolic process 1.84% (5/272) 2.37 0.003074 0.023235
GO:0017004 cytochrome complex assembly 0.74% (2/272) 4.62 0.003118 0.023297
GO:0098655 monoatomic cation transmembrane transport 1.84% (5/272) 2.31 0.003694 0.027285
GO:0034513 box H/ACA snoRNA binding 0.37% (1/272) 7.94 0.004066 0.029698
GO:0048584 positive regulation of response to stimulus 0.74% (2/272) 4.4 0.004171 0.030124
GO:0042138 meiotic DNA double-strand break formation 0.74% (2/272) 4.39 0.004249 0.030349
GO:0098662 inorganic cation transmembrane transport 1.84% (5/272) 2.26 0.004328 0.030578
GO:0034220 monoatomic ion transmembrane transport 1.84% (5/272) 2.25 0.004446 0.031075
GO:0009145 purine nucleoside triphosphate biosynthetic process 0.74% (2/272) 4.26 0.005022 0.034361
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 0.74% (2/272) 4.26 0.005022 0.034361
GO:2000026 regulation of multicellular organismal development 0.74% (2/272) 4.22 0.005322 0.035663
GO:0048580 regulation of post-embryonic development 0.74% (2/272) 4.23 0.005279 0.035741
GO:1902531 regulation of intracellular signal transduction 0.74% (2/272) 4.2 0.005453 0.036168
GO:0098660 inorganic ion transmembrane transport 1.84% (5/272) 2.15 0.005813 0.038166
GO:0000151 ubiquitin ligase complex 1.47% (4/272) 2.46 0.006429 0.041786
GO:0006760 folic acid-containing compound metabolic process 0.74% (2/272) 4.0 0.007189 0.046264
GO:0065002 intracellular protein transmembrane transport 0.74% (2/272) 3.95 0.007644 0.048711
GO:0042558 pteridine-containing compound metabolic process 0.74% (2/272) 3.92 0.007902 0.049868
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (272) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms