Coexpression cluster: Cluster_1620 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0015399 primary active transmembrane transporter activity 11.48% (7/61) 4.28 0.0 1.1e-05
GO:0140359 ABC-type transporter activity 9.84% (6/61) 4.9 0.0 1.1e-05
GO:0042626 ATPase-coupled transmembrane transporter activity 11.48% (7/61) 4.38 0.0 2e-05
GO:0009987 cellular process 45.9% (28/61) 1.32 1e-06 7.9e-05
GO:0110165 cellular anatomical entity 44.26% (27/61) 1.32 1e-06 8.5e-05
GO:0005575 cellular_component 47.54% (29/61) 1.25 1e-06 9.4e-05
GO:0022804 active transmembrane transporter activity 11.48% (7/61) 3.61 2e-06 9.6e-05
GO:0034660 ncRNA metabolic process 11.48% (7/61) 3.51 3e-06 0.000132
GO:0030686 90S preribosome 4.92% (3/61) 6.1 1.3e-05 0.000348
GO:0008150 biological_process 54.1% (33/61) 0.96 1.4e-05 0.00035
GO:1904812 rRNA acetylation involved in maturation of SSU-rRNA 3.28% (2/61) 8.62 1.2e-05 0.000361
GO:1990884 RNA acetylation 3.28% (2/61) 8.62 1.2e-05 0.000361
GO:1990882 rRNA acetylation 3.28% (2/61) 8.62 1.2e-05 0.000361
GO:1990883 rRNA cytidine N-acetyltransferase activity 3.28% (2/61) 8.62 1.2e-05 0.000361
GO:0030684 preribosome 6.56% (4/61) 4.74 1.7e-05 0.0004
GO:0140657 ATP-dependent activity 13.11% (8/61) 2.92 1.1e-05 0.000449
GO:0009304 tRNA transcription 3.28% (2/61) 8.18 2.3e-05 0.000484
GO:0042797 tRNA transcription by RNA polymerase III 3.28% (2/61) 8.18 2.3e-05 0.000484
GO:0055085 transmembrane transport 13.11% (8/61) 2.69 3.2e-05 0.000646
GO:0034470 ncRNA processing 8.2% (5/61) 3.51 8.2e-05 0.001478
GO:0006810 transport 16.39% (10/61) 2.14 7.9e-05 0.001489
GO:0051234 establishment of localization 16.39% (10/61) 2.08 0.000114 0.001655
GO:0016887 ATP hydrolysis activity 8.2% (5/61) 3.43 0.000105 0.001665
GO:0001054 RNA polymerase I activity 3.28% (2/61) 6.98 0.000121 0.001703
GO:0016070 RNA metabolic process 13.11% (8/61) 2.43 0.000112 0.001703
GO:0006360 transcription by RNA polymerase I 3.28% (2/61) 7.09 0.000105 0.001727
GO:0006364 rRNA processing 6.56% (4/61) 4.07 0.000102 0.00175
GO:0005736 RNA polymerase I complex 3.28% (2/61) 6.92 0.000132 0.001792
GO:0016072 rRNA metabolic process 6.56% (4/61) 3.96 0.000137 0.001792
GO:0051179 localization 16.39% (10/61) 2.03 0.000153 0.001872
GO:0001056 RNA polymerase III activity 3.28% (2/61) 6.83 0.000149 0.001884
GO:1990904 ribonucleoprotein complex 8.2% (5/61) 3.25 0.000186 0.002206
GO:0098781 ncRNA transcription 3.28% (2/61) 6.51 0.000232 0.002665
GO:0043226 organelle 22.95% (14/61) 1.49 0.000326 0.003428
GO:0006366 transcription by RNA polymerase II 3.28% (2/61) 6.31 0.000308 0.003432
GO:0043229 intracellular organelle 22.95% (14/61) 1.49 0.000325 0.003523
GO:0005666 RNA polymerase III complex 3.28% (2/61) 6.17 0.00037 0.003687
GO:0003674 molecular_function 57.38% (35/61) 0.7 0.000366 0.003751
GO:0005634 nucleus 14.75% (9/61) 2.0 0.000392 0.003808
GO:0006383 transcription by RNA polymerase III 3.28% (2/61) 5.96 0.000497 0.004712
GO:0007033 vacuole organization 3.28% (2/61) 5.89 0.000548 0.005068
GO:0017111 ribonucleoside triphosphate phosphatase activity 8.2% (5/61) 2.89 0.000581 0.005124
GO:0001055 RNA polymerase II activity 3.28% (2/61) 5.85 0.000578 0.005216
GO:0005665 RNA polymerase II, core complex 3.28% (2/61) 5.8 0.000619 0.005331
GO:0090304 nucleic acid metabolic process 14.75% (9/61) 1.88 0.000685 0.00577
GO:0000049 tRNA binding 3.28% (2/61) 5.7 0.000705 0.005806
GO:0140098 catalytic activity, acting on RNA 8.2% (5/61) 2.82 0.000739 0.005963
GO:0016462 pyrophosphatase activity 8.2% (5/61) 2.8 0.000786 0.006208
GO:0016817 hydrolase activity, acting on acid anhydrides 8.2% (5/61) 2.76 0.000885 0.00645
GO:0000154 rRNA modification 3.28% (2/61) 5.52 0.000905 0.006471
GO:0006396 RNA processing 8.2% (5/61) 2.77 0.00086 0.006522
GO:0016746 acyltransferase activity 8.2% (5/61) 2.76 0.00088 0.00654
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 8.2% (5/61) 2.77 0.000848 0.006561
GO:0030490 maturation of SSU-rRNA 3.28% (2/61) 5.47 0.000977 0.006857
GO:0006351 DNA-templated transcription 4.92% (3/61) 3.93 0.001051 0.007245
GO:0008080 N-acetyltransferase activity 3.28% (2/61) 5.37 0.001106 0.007487
GO:0022857 transmembrane transporter activity 11.48% (7/61) 2.11 0.001168 0.007764
GO:0000703 oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity 1.64% (1/61) 9.68 0.001217 0.007955
GO:0005730 nucleolus 4.92% (3/61) 3.82 0.001306 0.008389
GO:0016410 N-acyltransferase activity 3.28% (2/61) 5.21 0.001383 0.008735
GO:0140640 catalytic activity, acting on a nucleic acid 9.84% (6/61) 2.29 0.001443 0.008967
GO:0005215 transporter activity 11.48% (7/61) 2.04 0.001534 0.009378
GO:0000388 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) 1.64% (1/61) 9.27 0.001623 0.009763
GO:0010285 L,L-diaminopimelate aminotransferase activity 1.64% (1/61) 9.1 0.001826 0.010811
GO:0032991 protein-containing complex 14.75% (9/61) 1.67 0.001906 0.011113
GO:0006139 nucleobase-containing compound metabolic process 14.75% (9/61) 1.65 0.002106 0.012095
GO:0005488 binding 39.34% (24/61) 0.8 0.002393 0.013536
GO:0055029 nuclear DNA-directed RNA polymerase complex 3.28% (2/61) 4.75 0.002572 0.014333
GO:0032774 RNA biosynthetic process 4.92% (3/61) 3.42 0.002876 0.015572
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 3.28% (2/61) 4.67 0.002868 0.015756
GO:0043231 intracellular membrane-bounded organelle 18.03% (11/61) 1.36 0.00319 0.01703
GO:0043227 membrane-bounded organelle 18.03% (11/61) 1.35 0.003379 0.017545
GO:0000428 DNA-directed RNA polymerase complex 3.28% (2/61) 4.54 0.003429 0.01756
GO:0046483 heterocycle metabolic process 14.75% (9/61) 1.55 0.00334 0.01758
GO:0006399 tRNA metabolic process 4.92% (3/61) 3.29 0.003676 0.018576
GO:0006296 obsolete nucleotide-excision repair, DNA incision, 5'-to lesion 1.64% (1/61) 8.06 0.003749 0.018696
GO:0006725 cellular aromatic compound metabolic process 14.75% (9/61) 1.52 0.003885 0.019121
GO:0003824 catalytic activity 32.79% (20/61) 0.86 0.004207 0.020444
GO:0034062 5'-3' RNA polymerase activity 3.28% (2/61) 4.35 0.004445 0.021058
GO:0097747 RNA polymerase activity 3.28% (2/61) 4.35 0.004445 0.021058
GO:0097159 organic cyclic compound binding 27.87% (17/61) 0.96 0.004511 0.021109
GO:1901360 organic cyclic compound metabolic process 14.75% (9/61) 1.48 0.00469 0.021679
GO:0034641 cellular nitrogen compound metabolic process 14.75% (9/61) 1.46 0.004942 0.022296
GO:0030880 RNA polymerase complex 3.28% (2/61) 4.27 0.00491 0.022421
GO:0006285 base-excision repair, AP site formation 1.64% (1/61) 7.59 0.005164 0.023026
GO:0006880 intracellular sequestering of iron ion 1.64% (1/61) 7.48 0.005568 0.02398
GO:0051238 sequestering of metal ion 1.64% (1/61) 7.48 0.005568 0.02398
GO:0097577 sequestering of iron ion 1.64% (1/61) 7.48 0.005568 0.02398
GO:0000702 oxidized base lesion DNA N-glycosylase activity 1.64% (1/61) 7.41 0.005871 0.024723
GO:0016787 hydrolase activity 14.75% (9/61) 1.43 0.005826 0.024808
GO:0003676 nucleic acid binding 16.39% (10/61) 1.32 0.006163 0.025667
GO:0009451 RNA modification 4.92% (3/61) 3.0 0.006454 0.026586
GO:0034198 cellular response to amino acid starvation 1.64% (1/61) 7.22 0.006678 0.026925
GO:1990928 response to amino acid starvation 1.64% (1/61) 7.22 0.006678 0.026925
GO:0042646 plastid nucleoid 1.64% (1/61) 7.16 0.00698 0.027558
GO:0042644 chloroplast nucleoid 1.64% (1/61) 7.16 0.00698 0.027558
GO:0043228 non-membrane-bounded organelle 6.56% (4/61) 2.39 0.007223 0.027933
GO:0043232 intracellular non-membrane-bounded organelle 6.56% (4/61) 2.39 0.00722 0.028209
GO:0017053 transcription repressor complex 1.64% (1/61) 7.0 0.007787 0.029219
GO:0006357 regulation of transcription by RNA polymerase II 4.92% (3/61) 2.89 0.007872 0.02925
GO:0016407 acetyltransferase activity 3.28% (2/61) 3.94 0.007725 0.029278
GO:0034338 short-chain carboxylesterase activity 1.64% (1/61) 7.02 0.007686 0.029424
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups 4.92% (3/61) 2.88 0.008083 0.029743
GO:0071840 cellular component organization or biogenesis 9.84% (6/61) 1.74 0.00915 0.033343
GO:0042274 ribosomal small subunit biogenesis 1.64% (1/61) 6.57 0.010503 0.037202
GO:0016020 membrane 14.75% (9/61) 1.29 0.010426 0.037277
GO:0030897 HOPS complex 1.64% (1/61) 6.58 0.010402 0.037548
GO:0008199 ferric iron binding 1.64% (1/61) 6.54 0.010704 0.037562
GO:0003723 RNA binding 8.2% (5/61) 1.9 0.011116 0.03865
GO:0061630 ubiquitin protein ligase activity 3.28% (2/61) 3.64 0.011354 0.038767
GO:0009295 nucleoid 1.64% (1/61) 6.46 0.011306 0.038955
GO:0030688 preribosome, small subunit precursor 1.64% (1/61) 6.38 0.011908 0.040297
GO:0061659 ubiquitin-like protein ligase activity 3.28% (2/61) 3.58 0.012315 0.041304
GO:0022607 cellular component assembly 4.92% (3/61) 2.61 0.013245 0.044035
GO:0006904 vesicle docking involved in exocytosis 1.64% (1/61) 6.17 0.013813 0.04513
GO:0032981 mitochondrial respiratory chain complex I assembly 1.64% (1/61) 6.18 0.013713 0.045192
GO:0009089 lysine biosynthetic process via diaminopimelate 1.64% (1/61) 6.1 0.014513 0.046615
GO:0046451 diaminopimelate metabolic process 1.64% (1/61) 6.1 0.014513 0.046615
GO:0010257 NADH dehydrogenase complex assembly 1.64% (1/61) 6.03 0.015214 0.048454
GO:0034654 nucleobase-containing compound biosynthetic process 4.92% (3/61) 2.52 0.015621 0.048928
GO:0016423 tRNA (guanine) methyltransferase activity 1.64% (1/61) 5.99 0.015614 0.049313
GO:0006879 intracellular iron ion homeostasis 1.64% (1/61) 5.96 0.015913 0.049436
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (61) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms