Coexpression cluster: Cluster_2256 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1990904 ribonucleoprotein complex 10.34% (9/87) 3.59 0.0 3.6e-05
GO:0004791 thioredoxin-disulfide reductase (NADP) activity 3.45% (3/87) 8.25 0.0 3.7e-05
GO:0043226 organelle 25.29% (22/87) 1.63 1e-06 0.00017
GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor 3.45% (3/87) 7.02 2e-06 0.000195
GO:0043229 intracellular organelle 25.29% (22/87) 1.63 1e-06 0.000226
GO:0032991 protein-containing complex 17.24% (15/87) 1.9 1.1e-05 0.000891
GO:0043228 non-membrane-bounded organelle 9.2% (8/87) 2.88 1.4e-05 0.000907
GO:0043232 intracellular non-membrane-bounded organelle 9.2% (8/87) 2.88 1.4e-05 0.001036
GO:0005575 cellular_component 39.08% (34/87) 0.97 3.3e-05 0.001842
GO:0044391 ribosomal subunit 4.6% (4/87) 4.39 4.4e-05 0.002216
GO:0044271 cellular nitrogen compound biosynthetic process 9.2% (8/87) 2.6 5.7e-05 0.002627
GO:0044249 cellular biosynthetic process 12.64% (11/87) 2.07 6.3e-05 0.002641
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 3.45% (3/87) 5.24 7.6e-05 0.002927
GO:0003723 RNA binding 10.34% (9/87) 2.23 0.000133 0.003944
GO:1901576 organic substance biosynthetic process 12.64% (11/87) 1.95 0.000132 0.004143
GO:0003735 structural constituent of ribosome 4.6% (4/87) 3.99 0.00013 0.004355
GO:0009059 macromolecule biosynthetic process 8.05% (7/87) 2.67 0.000124 0.004451
GO:0034641 cellular nitrogen compound metabolic process 16.09% (14/87) 1.59 0.000208 0.00551
GO:0009058 biosynthetic process 12.64% (11/87) 1.87 0.000206 0.005763
GO:0001054 RNA polymerase I activity 2.3% (2/87) 6.47 0.000247 0.006221
GO:0005736 RNA polymerase I complex 2.3% (2/87) 6.41 0.000269 0.006466
GO:0001056 RNA polymerase III activity 2.3% (2/87) 6.32 0.000303 0.006949
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.3% (2/87) 6.14 0.000389 0.008519
GO:0006168 adenine salvage 1.15% (1/87) 11.17 0.000434 0.00912
GO:0003674 molecular_function 52.87% (46/87) 0.58 0.000613 0.012368
GO:0071826 protein-RNA complex organization 3.45% (3/87) 4.1 0.000755 0.012692
GO:1901566 organonitrogen compound biosynthetic process 6.9% (6/87) 2.47 0.000785 0.012764
GO:0005198 structural molecule activity 4.6% (4/87) 3.27 0.000843 0.012878
GO:0022618 protein-RNA complex assembly 3.45% (3/87) 4.15 0.000692 0.012925
GO:0042254 ribosome biogenesis 2.3% (2/87) 5.59 0.000822 0.012948
GO:0000493 box H/ACA snoRNP assembly 1.15% (1/87) 10.43 0.000724 0.013026
GO:0005666 RNA polymerase III complex 2.3% (2/87) 5.66 0.00075 0.013032
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 2.3% (2/87) 5.74 0.000676 0.013098
GO:0034654 nucleobase-containing compound biosynthetic process 5.75% (5/87) 2.75 0.000949 0.01367
GO:0044237 cellular metabolic process 24.14% (21/87) 1.04 0.000929 0.013764
GO:0001055 RNA polymerase II activity 2.3% (2/87) 5.34 0.00117 0.016381
GO:0043096 purine nucleobase salvage 1.15% (1/87) 9.58 0.001302 0.016408
GO:0016209 antioxidant activity 3.45% (3/87) 3.77 0.001469 0.016458
GO:0016070 RNA metabolic process 9.2% (8/87) 1.92 0.00128 0.016538
GO:0009987 cellular process 32.18% (28/87) 0.8 0.001459 0.016709
GO:0000470 maturation of LSU-rRNA 2.3% (2/87) 5.27 0.001273 0.016889
GO:0003862 3-isopropylmalate dehydrogenase activity 1.15% (1/87) 9.43 0.001447 0.016958
GO:0005840 ribosome 3.45% (3/87) 3.8 0.001381 0.016972
GO:0005634 nucleus 11.49% (10/87) 1.64 0.001419 0.017029
GO:0005665 RNA polymerase II, core complex 2.3% (2/87) 5.29 0.001252 0.017059
GO:0003676 nucleic acid binding 16.09% (14/87) 1.29 0.001587 0.017393
GO:0110165 cellular anatomical entity 31.03% (27/87) 0.81 0.0017 0.01823
GO:0140513 nuclear protein-containing complex 6.9% (6/87) 2.21 0.001981 0.020805
GO:0004416 hydroxyacylglutathione hydrolase activity 1.15% (1/87) 8.95 0.002025 0.020828
GO:0044208 'de novo' AMP biosynthetic process 1.15% (1/87) 8.75 0.002314 0.022427
GO:0006167 AMP biosynthetic process 1.15% (1/87) 8.75 0.002314 0.022427
GO:0004019 adenylosuccinate synthase activity 1.15% (1/87) 8.75 0.002314 0.022427
GO:0006139 nucleobase-containing compound metabolic process 12.64% (11/87) 1.43 0.002546 0.024213
GO:0015935 small ribosomal subunit 2.3% (2/87) 4.72 0.002703 0.025228
GO:0003999 adenine phosphoribosyltransferase activity 1.15% (1/87) 8.43 0.002892 0.025568
GO:0018130 heterocycle biosynthetic process 5.75% (5/87) 2.39 0.002812 0.025767
GO:0043231 intracellular membrane-bounded organelle 16.09% (14/87) 1.2 0.002884 0.025954
GO:0043227 membrane-bounded organelle 16.09% (14/87) 1.19 0.003086 0.026365
GO:0006412 translation 3.45% (3/87) 3.39 0.003046 0.026469
GO:0019438 aromatic compound biosynthetic process 5.75% (5/87) 2.31 0.003481 0.029241
GO:0005730 nucleolus 3.45% (3/87) 3.31 0.003597 0.029718
GO:0001096 TFIIF-class transcription factor complex binding 1.15% (1/87) 8.0 0.003902 0.030253
GO:0106130 purine phosphoribosyltransferase activity 1.15% (1/87) 8.0 0.003902 0.030253
GO:0002182 cytoplasmic translational elongation 1.15% (1/87) 8.05 0.003757 0.030544
GO:0043043 peptide biosynthetic process 3.45% (3/87) 3.27 0.003876 0.031007
GO:0022613 ribonucleoprotein complex biogenesis 2.3% (2/87) 4.41 0.004137 0.031117
GO:0022625 cytosolic large ribosomal subunit 2.3% (2/87) 4.41 0.0041 0.031307
GO:0046483 heterocycle metabolic process 12.64% (11/87) 1.33 0.004289 0.031792
GO:0009143 nucleoside triphosphate catabolic process 1.15% (1/87) 7.58 0.005199 0.035409
GO:0055029 nuclear DNA-directed RNA polymerase complex 2.3% (2/87) 4.24 0.005149 0.035547
GO:0006725 cellular aromatic compound metabolic process 12.64% (11/87) 1.3 0.005085 0.035598
GO:0006364 rRNA processing 3.45% (3/87) 3.14 0.004947 0.035616
GO:0005674 transcription factor TFIIF complex 1.15% (1/87) 7.67 0.004911 0.03587
GO:0010114 response to red light 1.15% (1/87) 7.62 0.005055 0.035882
GO:1901362 organic cyclic compound biosynthetic process 5.75% (5/87) 2.16 0.005362 0.036032
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.3% (2/87) 4.16 0.005736 0.038038
GO:0070990 snRNP binding 1.15% (1/87) 7.26 0.006494 0.038508
GO:0046084 adenine biosynthetic process 1.15% (1/87) 7.26 0.006494 0.038508
GO:1990446 U1 snRNP binding 1.15% (1/87) 7.26 0.006494 0.038508
GO:0046083 adenine metabolic process 1.15% (1/87) 7.26 0.006494 0.038508
GO:0006518 peptide metabolic process 3.45% (3/87) 3.01 0.00632 0.039324
GO:0015934 large ribosomal subunit 2.3% (2/87) 4.13 0.006011 0.039346
GO:1901360 organic cyclic compound metabolic process 12.64% (11/87) 1.25 0.006283 0.039583
GO:0009098 leucine biosynthetic process 1.15% (1/87) 7.33 0.006207 0.039597
GO:0016072 rRNA metabolic process 3.45% (3/87) 3.03 0.00614 0.039671
GO:0000428 DNA-directed RNA polymerase complex 2.3% (2/87) 4.03 0.006842 0.040095
GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e 1.15% (1/87) 7.03 0.007645 0.043783
GO:0043614 multi-eIF complex 1.15% (1/87) 7.03 0.007645 0.043783
GO:0032774 RNA biosynthetic process 3.45% (3/87) 2.9 0.007754 0.043911
GO:0043604 amide biosynthetic process 3.45% (3/87) 2.88 0.008179 0.045302
GO:0043933 protein-containing complex organization 4.6% (4/87) 2.35 0.008118 0.045459
GO:0005763 mitochondrial small ribosomal subunit 1.15% (1/87) 6.8 0.008937 0.046919
GO:0000314 organellar small ribosomal subunit 1.15% (1/87) 6.8 0.008937 0.046919
GO:0002188 translation reinitiation 1.15% (1/87) 6.85 0.00865 0.047387
GO:0097747 RNA polymerase activity 2.3% (2/87) 3.84 0.008839 0.047394
GO:0034062 5'-3' RNA polymerase activity 2.3% (2/87) 3.84 0.008839 0.047394
GO:0034457 Mpp10 complex 1.15% (1/87) 6.75 0.009224 0.047927
GO:0042797 tRNA transcription by RNA polymerase III 1.15% (1/87) 6.67 0.009798 0.04938
GO:0009304 tRNA transcription 1.15% (1/87) 6.67 0.009798 0.04938
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (87) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms