Coexpression cluster: Cluster_2372 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0051082 unfolded protein binding 4.32% (7/162) 4.86 0.0 5e-06
GO:0017111 ribonucleoside triphosphate phosphatase activity 8.02% (13/162) 2.86 0.0 1.4e-05
GO:0016817 hydrolase activity, acting on acid anhydrides 8.02% (13/162) 2.73 0.0 1.7e-05
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 8.02% (13/162) 2.74 0.0 1.9e-05
GO:0005575 cellular_component 37.65% (61/162) 0.91 0.0 1.9e-05
GO:0016462 pyrophosphatase activity 8.02% (13/162) 2.77 0.0 2.1e-05
GO:0016887 ATP hydrolysis activity 6.17% (10/162) 3.02 1e-06 5.8e-05
GO:0006457 protein folding 4.32% (7/162) 3.86 1e-06 6.1e-05
GO:0005488 binding 39.51% (64/162) 0.81 1e-06 7.8e-05
GO:0005515 protein binding 19.14% (31/162) 1.35 1e-06 8.1e-05
GO:0110165 cellular anatomical entity 33.33% (54/162) 0.92 1e-06 8.3e-05
GO:0032991 protein-containing complex 14.2% (23/162) 1.62 2e-06 0.000113
GO:0140662 ATP-dependent protein folding chaperone 3.09% (5/162) 4.46 4e-06 0.000213
GO:0031982 vesicle 4.32% (7/162) 3.44 5e-06 0.000235
GO:0044183 protein folding chaperone 3.09% (5/162) 4.25 8e-06 0.000308
GO:0048471 perinuclear region of cytoplasm 1.85% (3/162) 6.37 8e-06 0.000314
GO:0043226 organelle 19.14% (31/162) 1.23 7e-06 0.000316
GO:0043229 intracellular organelle 19.14% (31/162) 1.23 7e-06 0.000336
GO:0008150 biological_process 43.83% (71/162) 0.66 9e-06 0.000352
GO:0003674 molecular_function 51.85% (84/162) 0.55 1.3e-05 0.000448
GO:0009057 macromolecule catabolic process 5.56% (9/162) 2.62 2e-05 0.000557
GO:0003723 RNA binding 8.64% (14/162) 1.97 1.7e-05 0.000559
GO:0009987 cellular process 32.1% (52/162) 0.8 2.1e-05 0.000569
GO:0097708 intracellular vesicle 3.7% (6/162) 3.48 2e-05 0.000579
GO:0031410 cytoplasmic vesicle 3.7% (6/162) 3.48 2e-05 0.000579
GO:0043933 protein-containing complex organization 5.56% (9/162) 2.62 1.9e-05 0.000619
GO:0043227 membrane-bounded organelle 16.67% (27/162) 1.24 2.8e-05 0.000736
GO:0050821 protein stabilization 1.85% (3/162) 5.63 3.4e-05 0.000875
GO:0010265 SCF complex assembly 1.23% (2/162) 7.81 3.8e-05 0.00093
GO:0031647 regulation of protein stability 1.85% (3/162) 5.48 4.7e-05 0.001103
GO:0043231 intracellular membrane-bounded organelle 16.05% (26/162) 1.19 6.6e-05 0.001517
GO:0016787 hydrolase activity 13.58% (22/162) 1.31 8.4e-05 0.00186
GO:0071840 cellular component organization or biogenesis 9.26% (15/162) 1.65 0.000102 0.002199
GO:0016043 cellular component organization 8.64% (14/162) 1.71 0.000116 0.002424
GO:0005829 cytosol 6.17% (10/162) 2.12 0.00012 0.002448
GO:0034976 response to endoplasmic reticulum stress 2.47% (4/162) 3.94 0.00015 0.002962
GO:0034605 cellular response to heat 1.85% (3/162) 4.79 0.000192 0.003696
GO:0044877 protein-containing complex binding 4.32% (7/162) 2.56 0.000215 0.004019
GO:0030942 endoplasmic reticulum signal peptide binding 1.23% (2/162) 6.48 0.000242 0.004417
GO:0009570 chloroplast stroma 2.47% (4/162) 3.72 0.000266 0.004506
GO:0009532 plastid stroma 2.47% (4/162) 3.72 0.000266 0.004506
GO:0015918 sterol transport 1.23% (2/162) 6.41 0.000266 0.004731
GO:0051641 cellular localization 5.56% (9/162) 2.07 0.000345 0.005444
GO:0008137 NADH dehydrogenase (ubiquinone) activity 1.23% (2/162) 6.24 0.000337 0.005454
GO:0050136 NADH dehydrogenase (quinone) activity 1.23% (2/162) 6.24 0.000337 0.005454
GO:0005832 chaperonin-containing T-complex 1.23% (2/162) 6.13 0.000395 0.005969
GO:0016071 mRNA metabolic process 3.7% (6/162) 2.68 0.000392 0.006052
GO:0009408 response to heat 1.85% (3/162) 4.37 0.000444 0.006072
GO:0060255 regulation of macromolecule metabolic process 9.26% (15/162) 1.44 0.000462 0.006083
GO:0015850 organic hydroxy compound transport 1.23% (2/162) 6.02 0.000456 0.006118
GO:0007623 circadian rhythm 1.23% (2/162) 6.05 0.00044 0.006138
GO:0048511 rhythmic process 1.23% (2/162) 6.05 0.00044 0.006138
GO:0005786 signal recognition particle, endoplasmic reticulum targeting 1.23% (2/162) 6.08 0.000425 0.006164
GO:0005048 signal sequence binding 1.85% (3/162) 4.4 0.000421 0.006229
GO:0031323 regulation of cellular metabolic process 9.26% (15/162) 1.44 0.000492 0.006241
GO:0101031 protein folding chaperone complex 1.23% (2/162) 5.97 0.000488 0.006314
GO:0010468 regulation of gene expression 8.64% (14/162) 1.49 0.000542 0.006533
GO:0042277 peptide binding 1.85% (3/162) 4.29 0.000528 0.006584
GO:0008312 7S RNA binding 1.23% (2/162) 5.9 0.000539 0.006607
GO:1901575 organic substance catabolic process 6.17% (10/162) 1.84 0.000559 0.006622
GO:0140657 ATP-dependent activity 6.17% (10/162) 1.83 0.000586 0.006717
GO:0010629 negative regulation of gene expression 3.09% (5/162) 2.91 0.000598 0.006746
GO:0010556 regulation of macromolecule biosynthetic process 8.64% (14/162) 1.48 0.000579 0.006749
GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation 1.23% (2/162) 5.79 0.000629 0.006985
GO:0097159 organic cyclic compound binding 24.07% (39/162) 0.75 0.000696 0.007172
GO:0009889 regulation of biosynthetic process 8.64% (14/162) 1.45 0.000692 0.007237
GO:0031326 regulation of cellular biosynthetic process 8.64% (14/162) 1.45 0.000687 0.007293
GO:0019222 regulation of metabolic process 9.26% (15/162) 1.39 0.000678 0.007308
GO:0005768 endosome 2.47% (4/162) 3.36 0.000676 0.007391
GO:0009266 response to temperature stimulus 1.85% (3/162) 4.08 0.000795 0.008076
GO:0033554 cellular response to stress 4.94% (8/162) 2.03 0.000872 0.008159
GO:0009056 catabolic process 6.17% (10/162) 1.77 0.000816 0.008168
GO:0003955 NAD(P)H dehydrogenase (quinone) activity 1.23% (2/162) 5.58 0.000839 0.008171
GO:0048500 signal recognition particle 1.23% (2/162) 5.58 0.000839 0.008171
GO:0046907 intracellular transport 4.32% (7/162) 2.22 0.000871 0.008261
GO:0030134 COPII-coated ER to Golgi transport vesicle 1.23% (2/162) 5.56 0.000861 0.008268
GO:0065007 biological regulation 12.35% (20/162) 1.12 0.000945 0.008614
GO:0015453 oxidoreduction-driven active transmembrane transporter activity 1.23% (2/162) 5.5 0.000938 0.008662
GO:0003676 nucleic acid binding 13.58% (22/162) 1.05 0.000999 0.008987
GO:0051649 establishment of localization in cell 4.32% (7/162) 2.17 0.001059 0.009296
GO:0051716 cellular response to stimulus 4.94% (8/162) 1.99 0.001049 0.009326
GO:0033218 amide binding 1.85% (3/162) 3.93 0.001084 0.009399
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 1.23% (2/162) 5.24 0.001334 0.011424
GO:0019941 modification-dependent protein catabolic process 3.09% (5/162) 2.63 0.00142 0.012017
GO:0003954 NADH dehydrogenase activity 1.23% (2/162) 5.08 0.001674 0.014003
GO:0043632 modification-dependent macromolecule catabolic process 3.09% (5/162) 2.57 0.0017 0.014053
GO:0006325 chromatin organization 2.47% (4/162) 2.99 0.001743 0.014247
GO:0006613 cotranslational protein targeting to membrane 1.23% (2/162) 5.02 0.001796 0.014346
GO:0006614 SRP-dependent cotranslational protein targeting to membrane 1.23% (2/162) 5.02 0.001796 0.014346
GO:0010558 negative regulation of macromolecule biosynthetic process 3.09% (5/162) 2.54 0.001818 0.014363
GO:0065003 protein-containing complex assembly 3.09% (5/162) 2.51 0.002 0.015625
GO:0031327 negative regulation of cellular biosynthetic process 3.09% (5/162) 2.5 0.002056 0.01589
GO:0009890 negative regulation of biosynthetic process 3.09% (5/162) 2.5 0.002094 0.016011
GO:0004518 nuclease activity 3.09% (5/162) 2.46 0.002319 0.017357
GO:0003682 chromatin binding 2.47% (4/162) 2.88 0.002298 0.017384
GO:0003924 GTPase activity 2.47% (4/162) 2.83 0.002583 0.019133
GO:0031386 protein tag activity 1.23% (2/162) 4.69 0.002818 0.020241
GO:0141047 molecular tag activity 1.23% (2/162) 4.69 0.002818 0.020241
GO:0065002 intracellular protein transmembrane transport 1.23% (2/162) 4.7 0.002799 0.020518
GO:1990904 ribonucleoprotein complex 3.7% (6/162) 2.11 0.002938 0.020684
GO:0005634 nucleus 8.64% (14/162) 1.22 0.002936 0.020876
GO:0010605 negative regulation of macromolecule metabolic process 3.09% (5/162) 2.37 0.003038 0.021174
GO:0031324 negative regulation of cellular metabolic process 3.09% (5/162) 2.35 0.003251 0.022443
GO:0019001 guanyl nucleotide binding 2.47% (4/162) 2.73 0.003334 0.022576
GO:0030135 coated vesicle 1.23% (2/162) 4.52 0.003549 0.02273
GO:0009892 negative regulation of metabolic process 3.09% (5/162) 2.34 0.003327 0.022747
GO:0006402 mRNA catabolic process 1.85% (3/162) 3.34 0.003401 0.022812
GO:0071917 triose-phosphate transmembrane transporter activity 0.62% (1/162) 8.16 0.003499 0.022823
GO:0042879 aldonate transmembrane transporter activity 0.62% (1/162) 8.16 0.003499 0.022823
GO:0015120 phosphoglycerate transmembrane transporter activity 0.62% (1/162) 8.16 0.003499 0.022823
GO:0050794 regulation of cellular process 10.49% (17/162) 1.06 0.003535 0.022847
GO:0072599 establishment of protein localization to endoplasmic reticulum 1.23% (2/162) 4.46 0.003832 0.023485
GO:0045047 protein targeting to ER 1.23% (2/162) 4.46 0.003832 0.023485
GO:0006657 CDP-choline pathway 0.62% (1/162) 8.05 0.003768 0.023498
GO:0031210 phosphatidylcholine binding 0.62% (1/162) 8.05 0.003768 0.023498
GO:0004105 choline-phosphate cytidylyltransferase activity 0.62% (1/162) 8.05 0.003768 0.023498
GO:0051603 proteolysis involved in protein catabolic process 3.09% (5/162) 2.28 0.003922 0.023631
GO:0071824 protein-DNA complex organization 2.47% (4/162) 2.66 0.003902 0.023711
GO:0000388 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) 0.62% (1/162) 7.86 0.004305 0.025505
GO:0005052 peroxisome matrix targeting signal-1 binding 0.62% (1/162) 7.86 0.004305 0.025505
GO:0008104 protein localization 3.7% (6/162) 1.99 0.004373 0.025697
GO:0070727 cellular macromolecule localization 3.7% (6/162) 1.99 0.004422 0.02577
GO:0033036 macromolecule localization 3.7% (6/162) 1.98 0.004463 0.025801
GO:0006414 translational elongation 1.23% (2/162) 4.29 0.004815 0.02761
GO:0016567 protein ubiquitination 3.09% (5/162) 2.2 0.005002 0.028453
GO:0015031 protein transport 3.09% (5/162) 2.19 0.005137 0.028988
GO:0006401 RNA catabolic process 1.85% (3/162) 3.1 0.005431 0.030165
GO:0070972 protein localization to endoplasmic reticulum 1.23% (2/162) 4.21 0.005398 0.03022
GO:0000268 peroxisome targeting sequence binding 0.62% (1/162) 7.46 0.005646 0.031119
GO:0050789 regulation of biological process 10.49% (17/162) 0.99 0.005737 0.031376
GO:0045901 positive regulation of translational elongation 0.62% (1/162) 7.4 0.005914 0.031616
GO:1990726 Lsm1-7-Pat1 complex 0.62% (1/162) 7.4 0.005914 0.031616
GO:0098796 membrane protein complex 3.09% (5/162) 2.14 0.00589 0.031967
GO:0032446 protein modification by small protein conjugation 3.09% (5/162) 2.12 0.006249 0.033156
GO:0002182 cytoplasmic translational elongation 0.62% (1/162) 7.16 0.006986 0.034733
GO:0000304 response to singlet oxygen 0.62% (1/162) 7.16 0.006986 0.034733
GO:0010343 singlet oxygen-mediated programmed cell death 0.62% (1/162) 7.16 0.006986 0.034733
GO:0097468 programmed cell death in response to reactive oxygen species 0.62% (1/162) 7.16 0.006986 0.034733
GO:0032367 intracellular cholesterol transport 0.62% (1/162) 7.16 0.006986 0.034733
GO:0030301 cholesterol transport 0.62% (1/162) 7.16 0.006986 0.034733
GO:0031625 ubiquitin protein ligase binding 1.23% (2/162) 4.06 0.006598 0.034749
GO:0032993 protein-DNA complex 1.85% (3/162) 2.97 0.006943 0.036032
GO:0044389 ubiquitin-like protein ligase binding 1.23% (2/162) 4.02 0.006915 0.036152
GO:0006612 protein targeting to membrane 1.23% (2/162) 3.96 0.007509 0.037077
GO:0005688 U6 snRNP 0.62% (1/162) 6.95 0.008056 0.039503
GO:0005681 spliceosomal complex 1.85% (3/162) 2.89 0.00813 0.039592
GO:0042221 response to chemical 2.47% (4/162) 2.33 0.008594 0.041287
GO:0071702 organic substance transport 4.32% (7/162) 1.61 0.008549 0.041349
GO:0031969 chloroplast membrane 1.23% (2/162) 3.85 0.008732 0.041666
GO:0030433 ubiquitin-dependent ERAD pathway 1.23% (2/162) 3.81 0.009191 0.043564
GO:0030132 clathrin coat of coated pit 0.62% (1/162) 6.73 0.009393 0.043935
GO:0030130 clathrin coat of trans-Golgi network vesicle 0.62% (1/162) 6.73 0.009393 0.043935
GO:0048523 negative regulation of cellular process 3.09% (5/162) 1.97 0.009618 0.044693
GO:0140658 ATP-dependent chromatin remodeler activity 1.23% (2/162) 3.73 0.010175 0.046977
GO:0048519 negative regulation of biological process 3.09% (5/162) 1.94 0.010324 0.047358
GO:0000811 GINS complex 0.62% (1/162) 6.57 0.01046 0.047371
GO:0022607 cellular component assembly 3.09% (5/162) 1.94 0.01041 0.047443
GO:0031984 organelle subcompartment 1.85% (3/162) 2.74 0.01074 0.047725
GO:0071806 protein transmembrane transport 1.23% (2/162) 3.69 0.010809 0.047732
GO:0071782 endoplasmic reticulum tubular network 0.62% (1/162) 6.54 0.010727 0.047968
GO:0098827 endoplasmic reticulum subcompartment 0.62% (1/162) 6.54 0.010727 0.047968
GO:0030904 retromer complex 0.62% (1/162) 6.5 0.010994 0.048251
GO:0045905 positive regulation of translational termination 0.62% (1/162) 6.46 0.01126 0.048818
GO:0043243 positive regulation of protein-containing complex disassembly 0.62% (1/162) 6.46 0.01126 0.048818
GO:0006338 chromatin remodeling 1.85% (3/162) 2.7 0.011513 0.04961
GO:0006449 regulation of translational termination 0.62% (1/162) 6.4 0.011794 0.049617
GO:0006448 regulation of translational elongation 0.62% (1/162) 6.4 0.011794 0.049617
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase 0.62% (1/162) 6.4 0.011794 0.049617
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (162) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms