Coexpression cluster: Cluster_2240 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004750 D-ribulose-phosphate 3-epimerase activity 3.77% (2/53) 10.77 1e-06 0.000186
GO:0005840 ribosome 7.55% (4/53) 4.93 1e-05 0.000624
GO:0009052 pentose-phosphate shunt, non-oxidative branch 3.77% (2/53) 8.88 9e-06 0.00067
GO:0044237 cellular metabolic process 33.96% (18/53) 1.53 1.9e-05 0.000739
GO:0044262 obsolete cellular carbohydrate metabolic process 3.77% (2/53) 8.98 8e-06 0.000784
GO:0006081 cellular aldehyde metabolic process 5.66% (3/53) 6.0 1.6e-05 0.000809
GO:0003735 structural constituent of ribosome 7.55% (4/53) 4.7 1.8e-05 0.000822
GO:0032991 protein-containing complex 20.75% (11/53) 2.16 2.6e-05 0.000906
GO:0006412 translation 7.55% (4/53) 4.52 3e-05 0.000929
GO:0044391 ribosomal subunit 7.55% (4/53) 5.11 6e-06 0.000957
GO:0043043 peptide biosynthetic process 7.55% (4/53) 4.4 4.2e-05 0.00118
GO:0009059 macromolecule biosynthetic process 11.32% (6/53) 3.16 5.6e-05 0.001454
GO:0019682 glyceraldehyde-3-phosphate metabolic process 3.77% (2/53) 7.47 6.2e-05 0.001478
GO:0006518 peptide metabolic process 7.55% (4/53) 4.14 8.2e-05 0.001835
GO:1990904 ribonucleoprotein complex 9.43% (5/53) 3.46 9.5e-05 0.001854
GO:0000028 ribosomal small subunit assembly 3.77% (2/53) 7.11 0.000101 0.001855
GO:0005575 cellular_component 43.4% (23/53) 1.12 9.2e-05 0.001919
GO:0043604 amide biosynthetic process 7.55% (4/53) 4.01 0.000118 0.001942
GO:0008152 metabolic process 37.74% (20/53) 1.23 0.000114 0.001968
GO:0005198 structural molecule activity 7.55% (4/53) 3.98 0.000126 0.001968
GO:0110165 cellular anatomical entity 39.62% (21/53) 1.16 0.000141 0.002096
GO:0022618 protein-RNA complex assembly 5.66% (3/53) 4.86 0.000161 0.002181
GO:0003723 RNA binding 13.21% (7/53) 2.58 0.000159 0.002262
GO:0071826 protein-RNA complex organization 5.66% (3/53) 4.82 0.000176 0.002284
GO:0042254 ribosome biogenesis 3.77% (2/53) 6.31 0.000306 0.00382
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives 3.77% (2/53) 6.27 0.000321 0.003854
GO:0043603 amide metabolic process 7.55% (4/53) 3.58 0.000358 0.004137
GO:0016854 racemase and epimerase activity 3.77% (2/53) 6.08 0.000421 0.004697
GO:0043228 non-membrane-bounded organelle 9.43% (5/53) 2.92 0.00053 0.005516
GO:0022627 cytosolic small ribosomal subunit 3.77% (2/53) 5.86 0.000566 0.0057
GO:0043232 intracellular non-membrane-bounded organelle 9.43% (5/53) 2.92 0.00053 0.005703
GO:0071704 organic substance metabolic process 33.96% (18/53) 1.15 0.000596 0.005807
GO:0018738 S-formylglutathione hydrolase activity 1.89% (1/53) 10.66 0.000617 0.005835
GO:0009987 cellular process 37.74% (20/53) 1.03 0.000753 0.006908
GO:0043226 organelle 22.64% (12/53) 1.47 0.000968 0.008387
GO:0015935 small ribosomal subunit 3.77% (2/53) 5.44 0.001015 0.008562
GO:0043229 intracellular organelle 22.64% (12/53) 1.47 0.000967 0.008619
GO:0043170 macromolecule metabolic process 26.42% (14/53) 1.28 0.001272 0.010173
GO:0044271 cellular nitrogen compound biosynthetic process 9.43% (5/53) 2.63 0.001271 0.010436
GO:0032388 positive regulation of intracellular transport 1.89% (1/53) 9.15 0.001762 0.010575
GO:0033743 peptide-methionine (R)-S-oxide reductase activity 1.89% (1/53) 9.15 0.001762 0.010575
GO:1903829 positive regulation of protein localization 1.89% (1/53) 9.15 0.001762 0.010575
GO:0051223 regulation of protein transport 1.89% (1/53) 9.15 0.001762 0.010575
GO:0070201 regulation of establishment of protein localization 1.89% (1/53) 9.15 0.001762 0.010575
GO:0051050 positive regulation of transport 1.89% (1/53) 9.08 0.001851 0.010894
GO:0019538 protein metabolic process 18.87% (10/53) 1.54 0.001958 0.010907
GO:0070545 PeBoW complex 1.89% (1/53) 9.01 0.001939 0.010997
GO:0044594 17-beta-hydroxysteroid dehydrogenase (NAD+) activity 1.89% (1/53) 9.01 0.001939 0.010997
GO:0070863 positive regulation of protein exit from endoplasmic reticulum 1.89% (1/53) 9.22 0.001674 0.011115
GO:0033157 regulation of intracellular protein transport 1.89% (1/53) 9.22 0.001674 0.011115
GO:0090316 positive regulation of intracellular protein transport 1.89% (1/53) 9.22 0.001674 0.011115
GO:0051222 positive regulation of protein transport 1.89% (1/53) 9.22 0.001674 0.011115
GO:1904951 positive regulation of establishment of protein localization 1.89% (1/53) 9.22 0.001674 0.011115
GO:0070861 regulation of protein exit from endoplasmic reticulum 1.89% (1/53) 9.22 0.001674 0.011115
GO:0022613 ribonucleoprotein complex biogenesis 3.77% (2/53) 5.12 0.001561 0.011881
GO:0022625 cytosolic large ribosomal subunit 3.77% (2/53) 5.13 0.001547 0.012068
GO:0015934 large ribosomal subunit 3.77% (2/53) 4.84 0.002281 0.012484
GO:0044238 primary metabolic process 30.19% (16/53) 1.07 0.002467 0.01327
GO:0065003 protein-containing complex assembly 5.66% (3/53) 3.39 0.003026 0.016003
GO:0030091 protein repair 1.89% (1/53) 8.18 0.003434 0.017007
GO:0003729 mRNA binding 5.66% (3/53) 3.33 0.003385 0.017036
GO:0008135 translation factor activity, RNA binding 3.77% (2/53) 4.55 0.003369 0.017231
GO:0090079 translation regulator activity, nucleic acid binding 3.77% (2/53) 4.55 0.003369 0.017231
GO:0032880 regulation of protein localization 1.89% (1/53) 7.98 0.003961 0.019311
GO:0004300 enoyl-CoA hydratase activity 1.89% (1/53) 7.85 0.004313 0.020083
GO:1901566 organonitrogen compound biosynthetic process 7.55% (4/53) 2.6 0.004294 0.020299
GO:0045182 translation regulator activity 3.77% (2/53) 4.37 0.00429 0.020594
GO:0071840 cellular component organization or biogenesis 11.32% (6/53) 1.94 0.004613 0.021168
GO:0042579 microbody 3.77% (2/53) 4.27 0.004911 0.022205
GO:0003400 regulation of COPII vesicle coating 1.89% (1/53) 7.64 0.005015 0.022353
GO:0044249 cellular biosynthetic process 11.32% (6/53) 1.91 0.005104 0.02243
GO:0002188 translation reinitiation 1.89% (1/53) 7.56 0.005278 0.022873
GO:0005956 protein kinase CK2 complex 1.89% (1/53) 7.32 0.006243 0.026683
GO:0036402 proteasome-activating activity 1.89% (1/53) 7.28 0.006418 0.0267
GO:0001731 formation of translation preinitiation complex 1.89% (1/53) 7.28 0.006418 0.0267
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity 1.89% (1/53) 7.26 0.006506 0.026709
GO:0005829 cytosol 7.55% (4/53) 2.41 0.006825 0.027299
GO:0032386 regulation of intracellular transport 1.89% (1/53) 7.2 0.006769 0.027427
GO:0016560 protein import into peroxisome matrix, docking 1.89% (1/53) 7.08 0.007382 0.029154
GO:1901576 organic substance biosynthetic process 11.32% (6/53) 1.79 0.007599 0.029637
GO:1990429 peroxisomal importomer complex 1.89% (1/53) 6.98 0.007907 0.030086
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor 1.89% (1/53) 6.99 0.00782 0.03012
GO:0006796 phosphate-containing compound metabolic process 13.21% (7/53) 1.56 0.009163 0.032861
GO:0005488 binding 37.74% (20/53) 0.74 0.009069 0.032903
GO:0022607 cellular component assembly 5.66% (3/53) 2.81 0.009039 0.033179
GO:0006793 phosphorus metabolic process 13.21% (7/53) 1.55 0.009442 0.033475
GO:0006807 nitrogen compound metabolic process 24.53% (13/53) 1.02 0.009013 0.033478
GO:0060341 regulation of cellular localization 1.89% (1/53) 6.8 0.008957 0.033669
GO:0009058 biosynthetic process 11.32% (6/53) 1.71 0.009672 0.033907
GO:0046292 formaldehyde metabolic process 1.89% (1/53) 6.55 0.010617 0.035238
GO:0046294 formaldehyde catabolic process 1.89% (1/53) 6.55 0.010617 0.035238
GO:0110095 cellular detoxification of aldehyde 1.89% (1/53) 6.55 0.010617 0.035238
GO:0005844 polysome 1.89% (1/53) 6.61 0.01018 0.035291
GO:0002183 cytoplasmic translational initiation 1.89% (1/53) 6.59 0.010355 0.035502
GO:1901564 organonitrogen compound metabolic process 18.87% (10/53) 1.19 0.010932 0.035902
GO:0008540 proteasome regulatory particle, base subcomplex 1.89% (1/53) 6.44 0.011489 0.037339
GO:0044085 cellular component biogenesis 3.77% (2/53) 3.6 0.011957 0.038461
GO:0043933 protein-containing complex organization 5.66% (3/53) 2.65 0.012266 0.039052
GO:0005102 signaling receptor binding 1.89% (1/53) 6.21 0.013406 0.042248
GO:0004427 inorganic diphosphate phosphatase activity 1.89% (1/53) 6.17 0.013754 0.042912
GO:0003674 molecular_function 50.94% (27/53) 0.53 0.014247 0.044009
GO:0043254 regulation of protein-containing complex assembly 1.89% (1/53) 6.06 0.014884 0.045528
GO:0097159 organic cyclic compound binding 26.42% (14/53) 0.88 0.015339 0.046017
GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.89% (1/53) 6.02 0.015319 0.046402
GO:0016229 steroid dehydrogenase activity 1.89% (1/53) 5.97 0.01584 0.047067
GO:0061695 transferase complex, transferring phosphorus-containing groups 3.77% (2/53) 3.35 0.016721 0.048757
GO:0044282 small molecule catabolic process 3.77% (2/53) 3.35 0.016651 0.04901
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.89% (1/53) 5.85 0.017142 0.04952
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (53) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms