Coexpression cluster: Cluster_6 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0030120 vesicle coat 9.36% (19/203) 6.12 0.0 0.0
GO:0030117 membrane coat 9.36% (19/203) 5.85 0.0 0.0
GO:0030126 COPI vesicle coat 7.88% (16/203) 6.74 0.0 0.0
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 9.36% (19/203) 5.76 0.0 0.0
GO:0043531 ADP binding 17.24% (35/203) 3.61 0.0 0.0
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum 7.88% (16/203) 6.47 0.0 0.0
GO:0006891 intra-Golgi vesicle-mediated transport 7.88% (16/203) 6.22 0.0 0.0
GO:0009607 response to biotic stimulus 18.23% (37/203) 3.19 0.0 0.0
GO:0044419 biological process involved in interspecies interaction between organisms 18.23% (37/203) 3.19 0.0 0.0
GO:0043207 response to external biotic stimulus 18.23% (37/203) 3.19 0.0 0.0
GO:0051707 response to other organism 18.23% (37/203) 3.19 0.0 0.0
GO:0098542 defense response to other organism 18.23% (37/203) 3.19 0.0 0.0
GO:0006952 defense response 18.23% (37/203) 3.12 0.0 0.0
GO:0009605 response to external stimulus 18.23% (37/203) 3.1 0.0 0.0
GO:0048193 Golgi vesicle transport 9.36% (19/203) 4.87 0.0 0.0
GO:0006950 response to stress 19.7% (40/203) 2.46 0.0 0.0
GO:0032559 adenyl ribonucleotide binding 25.62% (52/203) 2.02 0.0 0.0
GO:0006886 intracellular protein transport 9.36% (19/203) 4.13 0.0 0.0
GO:0030554 adenyl nucleotide binding 25.62% (52/203) 1.96 0.0 0.0
GO:0032555 purine ribonucleotide binding 25.62% (52/203) 1.94 0.0 0.0
GO:0032553 ribonucleotide binding 25.62% (52/203) 1.93 0.0 0.0
GO:0097367 carbohydrate derivative binding 25.62% (52/203) 1.92 0.0 0.0
GO:0050896 response to stimulus 19.7% (40/203) 2.28 0.0 0.0
GO:0017076 purine nucleotide binding 25.62% (52/203) 1.88 0.0 0.0
GO:0015031 protein transport 9.36% (19/203) 3.79 0.0 0.0
GO:0098796 membrane protein complex 9.36% (19/203) 3.74 0.0 0.0
GO:0000166 nucleotide binding 25.62% (52/203) 1.82 0.0 0.0
GO:1901265 nucleoside phosphate binding 25.62% (52/203) 1.82 0.0 0.0
GO:0043168 anion binding 25.62% (52/203) 1.79 0.0 0.0
GO:1901363 heterocyclic compound binding 25.62% (52/203) 1.78 0.0 0.0
GO:0036094 small molecule binding 25.62% (52/203) 1.77 0.0 0.0
GO:0016192 vesicle-mediated transport 9.36% (19/203) 3.51 0.0 0.0
GO:0045184 establishment of protein localization 9.36% (19/203) 3.48 0.0 0.0
GO:0046907 intracellular transport 9.36% (19/203) 3.33 0.0 0.0
GO:0008104 protein localization 9.36% (19/203) 3.33 0.0 0.0
GO:0070727 cellular macromolecule localization 9.36% (19/203) 3.32 0.0 0.0
GO:0033036 macromolecule localization 9.36% (19/203) 3.32 0.0 0.0
GO:0051649 establishment of localization in cell 9.36% (19/203) 3.28 0.0 0.0
GO:0071705 nitrogen compound transport 9.36% (19/203) 3.06 0.0 0.0
GO:0043167 ion binding 27.59% (56/203) 1.42 0.0 0.0
GO:0051641 cellular localization 9.36% (19/203) 2.82 0.0 0.0
GO:0071702 organic substance transport 9.36% (19/203) 2.73 0.0 0.0
GO:0005488 binding 40.39% (82/203) 0.84 0.0 0.0
GO:0097159 organic cyclic compound binding 27.09% (55/203) 0.92 2e-06 1.2e-05
GO:0008150 biological_process 42.86% (87/203) 0.62 3e-06 2.1e-05
GO:0046523 S-methyl-5-thioribose-1-phosphate isomerase activity 0.99% (2/203) 9.53 3e-06 2.1e-05
GO:0002100 tRNA wobble adenosine to inosine editing 0.99% (2/203) 7.89 3.4e-05 0.000221
GO:0090110 COPII-coated vesicle cargo loading 1.48% (3/203) 5.26 7.3e-05 0.000454
GO:0035459 vesicle cargo loading 1.48% (3/203) 5.26 7.3e-05 0.000454
GO:1902882 regulation of response to oxidative stress 0.99% (2/203) 7.11 0.000102 0.00061
GO:1901031 regulation of response to reactive oxygen species 0.99% (2/203) 7.11 0.000102 0.00061
GO:0006382 adenosine to inosine editing 0.99% (2/203) 7.04 0.000111 0.000655
GO:0030127 COPII vesicle coat 1.48% (3/203) 5.03 0.000118 0.00068
GO:0008251 tRNA-specific adenosine deaminase activity 0.99% (2/203) 6.95 0.000127 0.000718
GO:0055072 obsolete iron ion homeostasis 0.99% (2/203) 6.8 0.000155 0.000861
GO:0070971 endoplasmic reticulum exit site 1.48% (3/203) 4.88 0.000159 0.000867
GO:0009620 response to fungus 2.96% (6/203) 2.9 0.000175 0.000923
GO:0050832 defense response to fungus 2.96% (6/203) 2.9 0.000175 0.000923
GO:0019509 L-methionine salvage from methylthioadenosine 0.99% (2/203) 6.6 0.000205 0.001029
GO:0071267 L-methionine salvage 0.99% (2/203) 6.6 0.000205 0.001029
GO:0043102 amino acid salvage 0.99% (2/203) 6.6 0.000205 0.001029
GO:0071265 L-methionine biosynthetic process 0.99% (2/203) 6.55 0.000219 0.00108
GO:0004000 adenosine deaminase activity 0.99% (2/203) 6.51 0.000233 0.001114
GO:0006810 transport 9.36% (19/203) 1.33 0.00023 0.001115
GO:0005515 protein binding 14.78% (30/203) 0.98 0.000287 0.00135
GO:0051234 establishment of localization 9.36% (19/203) 1.27 0.000398 0.001847
GO:0051179 localization 9.36% (19/203) 1.22 0.000619 0.002829
GO:0016553 base conversion or substitution editing 0.99% (2/203) 5.62 0.00079 0.003554
GO:0003674 molecular_function 46.31% (94/203) 0.39 0.000849 0.003766
GO:0032991 protein-containing complex 9.85% (20/203) 1.09 0.001305 0.005704
GO:0009086 methionine biosynthetic process 0.99% (2/203) 5.21 0.001394 0.00601
GO:0019239 deaminase activity 0.99% (2/203) 5.14 0.001535 0.006524
GO:0006555 methionine metabolic process 0.99% (2/203) 5.1 0.001626 0.006817
GO:0006468 protein phosphorylation 7.39% (15/203) 1.27 0.001657 0.006852
GO:0016310 phosphorylation 7.39% (15/203) 1.22 0.002215 0.009038
GO:0004672 protein kinase activity 7.39% (15/203) 1.22 0.002312 0.009307
GO:0016773 phosphotransferase activity, alcohol group as acceptor 7.88% (16/203) 1.16 0.002498 0.009928
GO:0002097 tRNA wobble base modification 0.99% (2/203) 4.74 0.002629 0.010315
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 0.99% (2/203) 4.58 0.003293 0.012755
GO:0016301 kinase activity 7.88% (16/203) 1.1 0.003756 0.014366
GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses 0.99% (2/203) 4.41 0.004112 0.015534
GO:0043094 cellular metabolic compound salvage 0.99% (2/203) 4.32 0.004675 0.017445
GO:0016772 transferase activity, transferring phosphorus-containing groups 8.37% (17/203) 0.99 0.005866 0.021628
GO:0000097 sulfur amino acid biosynthetic process 0.99% (2/203) 4.1 0.006279 0.022874
GO:0000096 sulfur amino acid metabolic process 0.99% (2/203) 3.97 0.007443 0.026796
GO:0016807 cysteine-type carboxypeptidase activity 0.49% (1/203) 6.72 0.009416 0.033503
GO:0070004 cysteine-type exopeptidase activity 0.49% (1/203) 6.67 0.009751 0.034295
GO:0006796 phosphate-containing compound metabolic process 8.37% (17/203) 0.9 0.010429 0.035857
GO:0004484 mRNA guanylyltransferase activity 0.49% (1/203) 6.58 0.010419 0.036231
GO:0006793 phosphorus metabolic process 8.37% (17/203) 0.89 0.010991 0.037371
GO:0009067 aspartate family amino acid biosynthetic process 0.99% (2/203) 3.65 0.011282 0.037526
GO:0043412 macromolecule modification 9.85% (20/203) 0.81 0.011257 0.037853
GO:0071944 cell periphery 0.49% (1/203) 6.25 0.013091 0.043073
GO:0016860 intramolecular oxidoreductase activity 0.99% (2/203) 3.48 0.014212 0.046266
GO:1990380 K48-linked deubiquitinase activity 0.49% (1/203) 6.07 0.014757 0.047532
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (203) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms