Coexpression cluster: Cluster_2072 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0015391 nucleobase:monoatomic cation symporter activity 6.78% (4/59) 9.48 0.0 0.0
GO:0005350 pyrimidine nucleobase transmembrane transporter activity 6.78% (4/59) 9.48 0.0 0.0
GO:0005274 allantoin:proton symporter activity 6.78% (4/59) 9.48 0.0 0.0
GO:0015505 uracil:monoatomic cation symporter activity 6.78% (4/59) 9.48 0.0 0.0
GO:0015210 uracil transmembrane transporter activity 6.78% (4/59) 9.48 0.0 0.0
GO:0015205 nucleobase transmembrane transporter activity 6.78% (4/59) 8.89 0.0 0.0
GO:0015295 solute:proton symporter activity 6.78% (4/59) 7.86 0.0 0.0
GO:0015294 solute:monoatomic cation symporter activity 6.78% (4/59) 7.7 0.0 0.0
GO:0015293 symporter activity 6.78% (4/59) 7.34 0.0 1e-06
GO:0042221 response to chemical 11.86% (7/59) 4.6 0.0 1e-06
GO:0033120 positive regulation of RNA splicing 5.08% (3/59) 8.44 0.0 3e-06
GO:0048026 positive regulation of mRNA splicing, via spliceosome 5.08% (3/59) 8.44 0.0 3e-06
GO:0050685 positive regulation of mRNA processing 5.08% (3/59) 8.44 0.0 3e-06
GO:0009408 response to heat 6.78% (4/59) 6.25 0.0 8e-06
GO:0005575 cellular_component 49.15% (29/59) 1.3 1e-06 1.3e-05
GO:0009266 response to temperature stimulus 6.78% (4/59) 5.95 1e-06 1.4e-05
GO:0033554 cellular response to stress 13.56% (8/59) 3.49 1e-06 1.4e-05
GO:0051716 cellular response to stimulus 13.56% (8/59) 3.44 1e-06 1.5e-05
GO:0006950 response to stress 20.34% (12/59) 2.5 1e-06 1.9e-05
GO:0006457 protein folding 8.47% (5/59) 4.83 1e-06 1.9e-05
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 8.47% (5/59) 4.84 1e-06 2e-05
GO:0009628 response to abiotic stimulus 8.47% (5/59) 4.79 1e-06 2.1e-05
GO:0048024 regulation of mRNA splicing, via spliceosome 5.08% (3/59) 7.1 2e-06 2.5e-05
GO:0010498 proteasomal protein catabolic process 8.47% (5/59) 4.7 2e-06 2.6e-05
GO:0051082 unfolded protein binding 6.78% (4/59) 5.51 2e-06 3.2e-05
GO:0032991 protein-containing complex 22.03% (13/59) 2.25 2e-06 3.4e-05
GO:0030163 protein catabolic process 8.47% (5/59) 4.58 2e-06 3.5e-05
GO:0050684 regulation of mRNA processing 5.08% (3/59) 6.83 3e-06 3.8e-05
GO:0042887 amide transmembrane transporter activity 6.78% (4/59) 5.34 3e-06 4.2e-05
GO:0010033 response to organic substance 8.47% (5/59) 4.48 3e-06 4.4e-05
GO:0050896 response to stimulus 20.34% (12/59) 2.33 4e-06 4.5e-05
GO:0043484 regulation of RNA splicing 5.08% (3/59) 6.65 4e-06 4.9e-05
GO:0071705 nitrogen compound transport 11.86% (7/59) 3.4 5e-06 5.4e-05
GO:0008150 biological_process 55.93% (33/59) 1.01 5e-06 6e-05
GO:1903313 positive regulation of mRNA metabolic process 5.08% (3/59) 6.42 7e-06 7.1e-05
GO:0006511 ubiquitin-dependent protein catabolic process 8.47% (5/59) 4.22 8e-06 8.1e-05
GO:0015078 proton transmembrane transporter activity 6.78% (4/59) 5.03 8e-06 8.2e-05
GO:0010628 positive regulation of gene expression 5.08% (3/59) 6.26 9e-06 9.2e-05
GO:0034605 cellular response to heat 5.08% (3/59) 6.24 9e-06 9.2e-05
GO:0019941 modification-dependent protein catabolic process 8.47% (5/59) 4.08 1.2e-05 0.000118
GO:0043632 modification-dependent macromolecule catabolic process 8.47% (5/59) 4.02 1.5e-05 0.000141
GO:0022853 active monoatomic ion transmembrane transporter activity 6.78% (4/59) 4.7 1.9e-05 0.000169
GO:0090693 plant organ senescence 3.39% (2/59) 8.23 2.1e-05 0.000182
GO:0010150 leaf senescence 3.39% (2/59) 8.23 2.1e-05 0.000182
GO:0030433 ubiquitin-dependent ERAD pathway 5.08% (3/59) 5.85 2.1e-05 0.000188
GO:1903311 regulation of mRNA metabolic process 5.08% (3/59) 5.78 2.5e-05 0.000203
GO:0036503 ERAD pathway 5.08% (3/59) 5.63 3.3e-05 0.000271
GO:0051603 proteolysis involved in protein catabolic process 8.47% (5/59) 3.74 3.8e-05 0.000305
GO:0010243 response to organonitrogen compound 5.08% (3/59) 5.41 5.3e-05 0.00041
GO:0015291 secondary active transmembrane transporter activity 6.78% (4/59) 4.3 5.5e-05 0.000421
GO:0015318 inorganic molecular entity transmembrane transporter activity 8.47% (5/59) 3.58 6.5e-05 0.000487
GO:1901698 response to nitrogen compound 5.08% (3/59) 5.21 7.9e-05 0.00058
GO:0048471 perinuclear region of cytoplasm 3.39% (2/59) 7.24 8.5e-05 0.0006
GO:0140662 ATP-dependent protein folding chaperone 5.08% (3/59) 5.18 8.4e-05 0.000604
GO:1901565 organonitrogen compound catabolic process 8.47% (5/59) 3.46 9.5e-05 0.000656
GO:0034976 response to endoplasmic reticulum stress 5.08% (3/59) 4.98 0.000126 0.000856
GO:0044183 protein folding chaperone 5.08% (3/59) 4.97 0.000129 0.000859
GO:0009057 macromolecule catabolic process 8.47% (5/59) 3.23 0.000201 0.001321
GO:0050821 protein stabilization 3.39% (2/59) 6.5 0.000235 0.00152
GO:0031647 regulation of protein stability 3.39% (2/59) 6.35 0.000288 0.001829
GO:0034599 cellular response to oxidative stress 3.39% (2/59) 6.32 0.000302 0.001886
GO:0062197 cellular response to chemical stress 3.39% (2/59) 6.29 0.000316 0.001913
GO:0006810 transport 15.25% (9/59) 2.04 0.000311 0.001914
GO:0022890 inorganic cation transmembrane transporter activity 6.78% (4/59) 3.56 0.000385 0.00229
GO:0051234 establishment of localization 15.25% (9/59) 1.97 0.000431 0.002529
GO:0005681 spliceosomal complex 5.08% (3/59) 4.34 0.00046 0.002655
GO:0006979 response to oxidative stress 5.08% (3/59) 4.34 0.000467 0.002656
GO:0051179 localization 15.25% (9/59) 1.92 0.000562 0.003104
GO:0008324 monoatomic cation transmembrane transporter activity 6.78% (4/59) 3.42 0.000558 0.003125
GO:0022857 transmembrane transporter activity 11.86% (7/59) 2.16 0.000956 0.005204
GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity 1.69% (1/59) 9.99 0.000981 0.005266
GO:0015075 monoatomic ion transmembrane transporter activity 6.78% (4/59) 3.14 0.001147 0.006068
GO:0070887 cellular response to chemical stimulus 3.39% (2/59) 5.31 0.0012 0.006265
GO:0005215 transporter activity 11.86% (7/59) 2.09 0.001259 0.006482
GO:0051254 positive regulation of RNA metabolic process 5.08% (3/59) 3.77 0.00145 0.007366
GO:0033263 CORVET complex 1.69% (1/59) 9.31 0.00157 0.007476
GO:0031328 positive regulation of cellular biosynthetic process 5.08% (3/59) 3.73 0.001567 0.007556
GO:0009891 positive regulation of biosynthetic process 5.08% (3/59) 3.73 0.001567 0.007556
GO:0010557 positive regulation of macromolecule biosynthetic process 5.08% (3/59) 3.73 0.001567 0.007556
GO:0006508 proteolysis 8.47% (5/59) 2.58 0.001511 0.007573
GO:1990904 ribonucleoprotein complex 6.78% (4/59) 2.98 0.0017 0.007897
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 5.08% (3/59) 3.69 0.001695 0.007974
GO:0010035 response to inorganic substance 3.39% (2/59) 5.02 0.001799 0.008258
GO:0140513 nuclear protein-containing complex 8.47% (5/59) 2.51 0.001891 0.008578
GO:0110165 cellular anatomical entity 33.9% (20/59) 0.94 0.002033 0.009111
GO:0022804 active transmembrane transporter activity 6.78% (4/59) 2.85 0.002328 0.010194
GO:0003674 molecular_function 54.24% (32/59) 0.62 0.002304 0.010208
GO:0016020 membrane 16.95% (10/59) 1.49 0.002575 0.011151
GO:0031325 positive regulation of cellular metabolic process 5.08% (3/59) 3.42 0.002881 0.012334
GO:0051252 regulation of RNA metabolic process 10.17% (6/59) 2.05 0.003242 0.013723
GO:1901575 organic substance catabolic process 8.47% (5/59) 2.3 0.003527 0.014767
GO:0019219 regulation of nucleobase-containing compound metabolic process 10.17% (6/59) 1.99 0.003929 0.016269
GO:1901700 response to oxygen-containing compound 3.39% (2/59) 4.43 0.003999 0.016384
GO:0048522 positive regulation of cellular process 5.08% (3/59) 3.24 0.004051 0.01642
GO:0017111 ribonucleoside triphosphate phosphatase activity 6.78% (4/59) 2.62 0.00416 0.016682
GO:0055062 phosphate ion homeostasis 1.69% (1/59) 7.82 0.004409 0.016797
GO:0051173 positive regulation of nitrogen compound metabolic process 5.08% (3/59) 3.22 0.004234 0.016805
GO:0000502 proteasome complex 1.69% (1/59) 7.79 0.004507 0.016833
GO:0071818 BAT3 complex 1.69% (1/59) 7.79 0.004507 0.016833
GO:0009893 positive regulation of metabolic process 5.08% (3/59) 3.2 0.004401 0.016935
GO:0010604 positive regulation of macromolecule metabolic process 5.08% (3/59) 3.2 0.004393 0.01708
GO:0009056 catabolic process 8.47% (5/59) 2.22 0.004352 0.017093
GO:0016462 pyrophosphatase activity 6.78% (4/59) 2.52 0.00527 0.019494
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.78% (4/59) 2.5 0.005593 0.019914
GO:0043621 protein self-association 1.69% (1/59) 7.48 0.005581 0.020061
GO:0009570 chloroplast stroma 3.39% (2/59) 4.18 0.005572 0.02022
GO:0009532 plastid stroma 3.39% (2/59) 4.18 0.005572 0.02022
GO:0072379 ER membrane insertion complex 1.69% (1/59) 7.41 0.005874 0.020346
GO:0016817 hydrolase activity, acting on acid anhydrides 6.78% (4/59) 2.48 0.005781 0.020394
GO:0065007 biological regulation 15.25% (9/59) 1.42 0.005873 0.020528
GO:0005773 vacuole 3.39% (2/59) 4.1 0.00619 0.021248
GO:0099023 vesicle tethering complex 3.39% (2/59) 4.05 0.006609 0.022481
GO:0048518 positive regulation of biological process 5.08% (3/59) 2.98 0.006671 0.022492
GO:0051787 misfolded protein binding 1.69% (1/59) 7.14 0.007045 0.023545
GO:0051171 regulation of nitrogen compound metabolic process 10.17% (6/59) 1.81 0.007123 0.023599
GO:0009651 response to salt stress 1.69% (1/59) 7.1 0.00724 0.023779
GO:0043226 organelle 18.64% (11/59) 1.19 0.007576 0.024055
GO:0043229 intracellular organelle 18.64% (11/59) 1.19 0.007571 0.024239
GO:0080090 regulation of primary metabolic process 10.17% (6/59) 1.8 0.007446 0.024247
GO:0043231 intracellular membrane-bounded organelle 16.95% (10/59) 1.27 0.007558 0.024403
GO:0043227 membrane-bounded organelle 16.95% (10/59) 1.26 0.007952 0.024633
GO:0009987 cellular process 32.2% (19/59) 0.81 0.007832 0.024662
GO:0006273 lagging strand elongation 1.69% (1/59) 6.97 0.007922 0.02474
GO:0005658 alpha DNA polymerase:primase complex 1.69% (1/59) 6.9 0.008312 0.025538
GO:0006970 response to osmotic stress 1.69% (1/59) 6.84 0.008701 0.026521
GO:0009414 response to water deprivation 1.69% (1/59) 6.82 0.008798 0.026605
GO:0009415 response to water 1.69% (1/59) 6.81 0.008896 0.026687
GO:0051259 protein complex oligomerization 1.69% (1/59) 6.79 0.008993 0.026769
GO:0010468 regulation of gene expression 10.17% (6/59) 1.72 0.009597 0.028126
GO:0097428 protein maturation by iron-sulfur cluster transfer 1.69% (1/59) 6.7 0.009577 0.028285
GO:0010556 regulation of macromolecule biosynthetic process 10.17% (6/59) 1.71 0.009901 0.028577
GO:0016602 CCAAT-binding factor complex 1.69% (1/59) 6.66 0.009869 0.028702
GO:0009889 regulation of biosynthetic process 10.17% (6/59) 1.68 0.010777 0.030641
GO:0031326 regulation of cellular biosynthetic process 10.17% (6/59) 1.69 0.010741 0.030768
GO:1902975 mitotic DNA replication initiation 1.69% (1/59) 6.46 0.011326 0.03127
GO:1902292 cell cycle DNA replication initiation 1.69% (1/59) 6.46 0.011326 0.03127
GO:1902315 nuclear cell cycle DNA replication initiation 1.69% (1/59) 6.46 0.011326 0.03127
GO:0032456 endocytic recycling 1.69% (1/59) 6.43 0.01152 0.031351
GO:0030688 preribosome, small subunit precursor 1.69% (1/59) 6.43 0.01152 0.031351
GO:0042542 response to hydrogen peroxide 1.69% (1/59) 6.47 0.011229 0.031691
GO:0006272 leading strand elongation 1.69% (1/59) 6.4 0.011811 0.031916
GO:0000938 GARP complex 1.69% (1/59) 6.3 0.012587 0.033773
GO:1905369 endopeptidase complex 1.69% (1/59) 6.22 0.013363 0.035603
GO:0060255 regulation of macromolecule metabolic process 10.17% (6/59) 1.58 0.014958 0.039577
GO:0016320 endoplasmic reticulum membrane fusion 1.69% (1/59) 6.01 0.015396 0.040176
GO:0031323 regulation of cellular metabolic process 10.17% (6/59) 1.57 0.015368 0.04038
GO:0003688 DNA replication origin binding 1.69% (1/59) 5.98 0.015686 0.040655
GO:0140535 intracellular protein-containing complex 5.08% (3/59) 2.51 0.016084 0.041404
GO:0030968 endoplasmic reticulum unfolded protein response 1.69% (1/59) 5.85 0.017135 0.043814
GO:0046907 intracellular transport 5.08% (3/59) 2.45 0.017733 0.044745
GO:0019222 regulation of metabolic process 10.17% (6/59) 1.53 0.017684 0.044917
GO:0003924 GTPase activity 3.39% (2/59) 3.29 0.018047 0.045237
GO:0006896 Golgi to vacuole transport 1.69% (1/59) 5.77 0.018196 0.045312
GO:0001101 response to acid chemical 1.69% (1/59) 5.71 0.018871 0.046687
GO:0051649 establishment of localization in cell 5.08% (3/59) 2.4 0.019378 0.047634
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (59) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms