Coexpression cluster: Cluster_2114 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016781 phosphotransferase activity, paired acceptors 6.74% (6/89) 8.44 0.0 0.0
GO:0050242 pyruvate, phosphate dikinase activity 6.74% (6/89) 8.44 0.0 0.0
GO:0042651 thylakoid membrane 6.74% (6/89) 5.32 0.0 1e-06
GO:0034357 photosynthetic membrane 6.74% (6/89) 5.32 0.0 1e-06
GO:0006090 pyruvate metabolic process 6.74% (6/89) 4.9 0.0 5e-06
GO:0044237 cellular metabolic process 32.58% (29/89) 1.47 0.0 1.2e-05
GO:0009535 chloroplast thylakoid membrane 5.62% (5/89) 5.18 0.0 1.5e-05
GO:0055035 plastid thylakoid membrane 5.62% (5/89) 5.18 0.0 1.5e-05
GO:0009521 photosystem 4.49% (4/89) 6.28 0.0 1.5e-05
GO:0008152 metabolic process 38.2% (34/89) 1.25 0.0 1.6e-05
GO:0015979 photosynthesis 4.49% (4/89) 5.88 1e-06 2.9e-05
GO:0032787 monocarboxylic acid metabolic process 7.87% (7/89) 3.72 1e-06 4e-05
GO:0042170 plastid membrane 5.62% (5/89) 4.57 3e-06 8.1e-05
GO:0051923 sulfation 3.37% (3/89) 6.73 4e-06 0.000102
GO:0031968 organelle outer membrane 5.62% (5/89) 4.45 4e-06 0.000105
GO:0019867 outer membrane 5.62% (5/89) 4.38 5e-06 0.000124
GO:0008146 sulfotransferase activity 3.37% (3/89) 6.29 9e-06 0.000207
GO:0110165 cellular anatomical entity 35.96% (32/89) 1.02 3e-05 0.000689
GO:0016782 transferase activity, transferring sulphur-containing groups 3.37% (3/89) 5.41 5.4e-05 0.001149
GO:0009987 cellular process 35.96% (32/89) 0.96 7e-05 0.001364
GO:0005788 endoplasmic reticulum lumen 2.25% (2/89) 7.4 6.8e-05 0.001384
GO:0008150 biological_process 47.19% (42/89) 0.76 7.8e-05 0.001446
GO:0015035 protein-disulfide reductase activity 2.25% (2/89) 6.84 0.000148 0.002511
GO:0005575 cellular_component 37.08% (33/89) 0.89 0.000142 0.002512
GO:0009522 photosystem I 2.25% (2/89) 6.8 0.000156 0.002534
GO:0009507 chloroplast 5.62% (5/89) 3.21 0.000221 0.003461
GO:0009058 biosynthetic process 12.36% (11/89) 1.84 0.000252 0.003537
GO:0009536 plastid 5.62% (5/89) 3.17 0.00025 0.003638
GO:0010287 plastoglobule 2.25% (2/89) 6.48 0.000242 0.00365
GO:0006790 sulfur compound metabolic process 4.49% (4/89) 3.69 0.00028 0.003792
GO:0009654 photosystem II oxygen evolving complex 2.25% (2/89) 6.31 0.000307 0.004025
GO:0006082 organic acid metabolic process 7.87% (7/89) 2.43 0.000344 0.004113
GO:0043436 oxoacid metabolic process 7.87% (7/89) 2.43 0.000342 0.004218
GO:0019752 carboxylic acid metabolic process 7.87% (7/89) 2.43 0.000336 0.004276
GO:0098588 bounding membrane of organelle 5.62% (5/89) 3.05 0.000373 0.004335
GO:0098796 membrane protein complex 5.62% (5/89) 3.01 0.000425 0.004799
GO:0009523 photosystem II 2.25% (2/89) 6.03 0.000453 0.004987
GO:0015036 disulfide oxidoreductase activity 2.25% (2/89) 5.87 0.000564 0.006036
GO:0009765 photosynthesis, light harvesting 2.25% (2/89) 5.8 0.000623 0.006185
GO:0009768 photosynthesis, light harvesting in photosystem I 2.25% (2/89) 5.8 0.000623 0.006185
GO:0006518 peptide metabolic process 4.49% (4/89) 3.4 0.000608 0.006342
GO:1901566 organonitrogen compound biosynthetic process 6.74% (6/89) 2.44 0.000885 0.008573
GO:0044281 small molecule metabolic process 8.99% (8/89) 1.92 0.001298 0.012007
GO:0051539 4 iron, 4 sulfur cluster binding 2.25% (2/89) 5.26 0.001295 0.012261
GO:0008974 phosphoribulokinase activity 1.12% (1/89) 9.4 0.00148 0.013386
GO:0061635 regulation of protein complex stability 1.12% (1/89) 9.26 0.001628 0.014404
GO:0033014 tetrapyrrole biosynthetic process 2.25% (2/89) 4.99 0.001867 0.016171
GO:0031090 organelle membrane 5.62% (5/89) 2.46 0.002242 0.019009
GO:0043603 amide metabolic process 4.49% (4/89) 2.84 0.002496 0.020735
GO:0070013 intracellular organelle lumen 2.25% (2/89) 4.71 0.002753 0.021141
GO:0043233 organelle lumen 2.25% (2/89) 4.71 0.002753 0.021141
GO:0031974 membrane-enclosed lumen 2.25% (2/89) 4.71 0.002753 0.021141
GO:1901576 organic substance biosynthetic process 10.11% (9/89) 1.63 0.002608 0.021226
GO:0051002 ligase activity, forming nitrogen-metal bonds 1.12% (1/89) 8.26 0.003253 0.021356
GO:0008883 glutamyl-tRNA reductase activity 1.12% (1/89) 8.26 0.003253 0.021356
GO:0016851 magnesium chelatase activity 1.12% (1/89) 8.26 0.003253 0.021356
GO:0004452 isopentenyl-diphosphate delta-isomerase activity 1.12% (1/89) 8.26 0.003253 0.021356
GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes 1.12% (1/89) 8.26 0.003253 0.021356
GO:0031591 wybutosine biosynthetic process 1.12% (1/89) 8.2 0.003401 0.021628
GO:0031590 wybutosine metabolic process 1.12% (1/89) 8.2 0.003401 0.021628
GO:0016860 intramolecular oxidoreductase activity 2.25% (2/89) 4.67 0.0029 0.02186
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 2.25% (2/89) 4.62 0.003084 0.022823
GO:0006412 translation 3.37% (3/89) 3.36 0.003248 0.02319
GO:0033013 tetrapyrrole metabolic process 2.25% (2/89) 4.59 0.003206 0.023301
GO:0043043 peptide biosynthetic process 3.37% (3/89) 3.24 0.004131 0.025865
GO:0004373 glycogen (starch) synthase activity 1.12% (1/89) 7.55 0.005318 0.032795
GO:0005787 signal peptidase complex 1.12% (1/89) 7.36 0.006054 0.036779
GO:1990204 oxidoreductase complex 2.25% (2/89) 4.07 0.006497 0.037777
GO:0051540 metal cluster binding 2.25% (2/89) 4.07 0.006466 0.038142
GO:0051536 iron-sulfur cluster binding 2.25% (2/89) 4.07 0.006466 0.038142
GO:0046863 ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity 1.12% (1/89) 7.17 0.006937 0.039768
GO:0009941 chloroplast envelope 2.25% (2/89) 3.99 0.007197 0.040126
GO:0009526 plastid envelope 2.25% (2/89) 3.99 0.007197 0.040126
GO:0009416 response to light stimulus 2.25% (2/89) 3.93 0.007811 0.042959
GO:0005737 cytoplasm 8.99% (8/89) 1.48 0.008109 0.044007
GO:0015969 guanosine tetraphosphate metabolic process 1.12% (1/89) 6.91 0.00826 0.044237
GO:0034035 purine ribonucleoside bisphosphate metabolic process 1.12% (1/89) 6.89 0.008407 0.044439
GO:0043604 amide biosynthetic process 3.37% (3/89) 2.84 0.008703 0.044838
GO:0009538 photosystem I reaction center 1.12% (1/89) 6.84 0.008701 0.045402
GO:0009314 response to radiation 2.25% (2/89) 3.82 0.00907 0.045574
GO:0034976 response to endoplasmic reticulum stress 2.25% (2/89) 3.81 0.009215 0.045739
GO:0070181 small ribosomal subunit rRNA binding 1.12% (1/89) 6.79 0.008995 0.045761
GO:0004096 catalase activity 1.12% (1/89) 6.7 0.009582 0.046985
GO:0032544 plastid translation 1.12% (1/89) 6.68 0.009728 0.047137
GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds 1.12% (1/89) 6.63 0.010022 0.047987
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (89) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms