Coexpression cluster: Cluster_2233 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 62.24% (61/98) 0.82 0.0 3.2e-05
GO:0005575 cellular_component 42.86% (42/98) 1.1 0.0 4.3e-05
GO:0016854 racemase and epimerase activity 4.08% (4/98) 6.19 0.0 4.7e-05
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives 4.08% (4/98) 6.39 0.0 5.5e-05
GO:0004750 D-ribulose-phosphate 3-epimerase activity 2.04% (2/98) 9.88 2e-06 0.000167
GO:0005829 cytosol 10.2% (10/98) 2.85 1e-06 0.000169
GO:0110165 cellular anatomical entity 37.76% (37/98) 1.1 2e-06 0.000193
GO:0008150 biological_process 50.0% (49/98) 0.85 3e-06 0.000197
GO:0005975 carbohydrate metabolic process 9.18% (9/98) 2.62 1.8e-05 0.001121
GO:0045184 establishment of protein localization 7.14% (7/98) 3.09 2e-05 0.001162
GO:0016787 hydrolase activity 17.35% (17/98) 1.66 2.3e-05 0.00121
GO:0044262 obsolete cellular carbohydrate metabolic process 2.04% (2/98) 8.09 2.6e-05 0.001234
GO:0009052 pentose-phosphate shunt, non-oxidative branch 2.04% (2/98) 8.0 3e-05 0.001298
GO:0033036 macromolecule localization 7.14% (7/98) 2.93 4.1e-05 0.00148
GO:0070727 cellular macromolecule localization 7.14% (7/98) 2.93 4.1e-05 0.001559
GO:0008104 protein localization 7.14% (7/98) 2.94 4e-05 0.001647
GO:0003824 catalytic activity 34.69% (34/98) 0.94 6.7e-05 0.002262
GO:0003844 1,4-alpha-glucan branching enzyme activity 2.04% (2/98) 7.35 7.2e-05 0.002299
GO:0006081 cellular aldehyde metabolic process 3.06% (3/98) 5.11 9.8e-05 0.002946
GO:0016853 isomerase activity 5.1% (5/98) 3.32 0.00016 0.00457
GO:0019682 glyceraldehyde-3-phosphate metabolic process 2.04% (2/98) 6.58 0.000211 0.005241
GO:0008964 phosphoenolpyruvate carboxylase activity 2.04% (2/98) 6.6 0.000205 0.00531
GO:0005488 binding 38.78% (38/98) 0.78 0.000224 0.005329
GO:0015977 carbon fixation 2.04% (2/98) 6.51 0.000235 0.005362
GO:0006886 intracellular protein transport 5.1% (5/98) 3.25 0.000199 0.005403
GO:0004611 phosphoenolpyruvate carboxykinase activity 2.04% (2/98) 6.22 0.00035 0.007403
GO:0051641 cellular localization 7.14% (7/98) 2.43 0.000346 0.007595
GO:0048366 leaf development 2.04% (2/98) 6.13 0.000393 0.007747
GO:0048827 phyllome development 2.04% (2/98) 6.13 0.000393 0.007747
GO:0042286 glutamate-1-semialdehyde 2,1-aminomutase activity 1.02% (1/98) 11.0 0.000489 0.00901
GO:0016869 intramolecular aminotransferase activity 1.02% (1/98) 11.0 0.000489 0.00901
GO:0015031 protein transport 5.1% (5/98) 2.92 0.000569 0.009838
GO:0008152 metabolic process 29.59% (29/98) 0.88 0.00056 0.009989
GO:0033365 protein localization to organelle 4.08% (4/98) 3.4 0.000606 0.01017
GO:0010349 L-galactose dehydrogenase activity 1.02% (1/98) 10.0 0.000978 0.015957
GO:0009987 cellular process 31.63% (31/98) 0.78 0.001156 0.017374
GO:0019853 L-ascorbic acid biosynthetic process 1.02% (1/98) 9.77 0.001141 0.017608
GO:0018738 S-formylglutathione hydrolase activity 1.02% (1/98) 9.77 0.001141 0.017608
GO:0071704 organic substance metabolic process 27.55% (27/98) 0.85 0.001325 0.018457
GO:0005996 monosaccharide metabolic process 3.06% (3/98) 3.81 0.001362 0.018516
GO:0005746 mitochondrial respirasome 1.02% (1/98) 9.58 0.001304 0.018613
GO:0009084 glutamine family amino acid biosynthetic process 2.04% (2/98) 5.26 0.001291 0.018901
GO:0070469 respirasome 1.02% (1/98) 9.41 0.001467 0.019035
GO:0003723 RNA binding 8.16% (8/98) 1.89 0.001504 0.019081
GO:1901566 organonitrogen compound biosynthetic process 6.12% (6/98) 2.3 0.001458 0.019367
GO:0048046 apoplast 2.04% (2/98) 5.08 0.001655 0.020112
GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity 1.02% (1/98) 9.26 0.00163 0.020228
GO:0042170 plastid membrane 3.06% (3/98) 3.69 0.001701 0.020235
GO:0046394 carboxylic acid biosynthetic process 4.08% (4/98) 2.97 0.001807 0.020638
GO:0016053 organic acid biosynthetic process 4.08% (4/98) 2.97 0.001807 0.020638
GO:0099402 plant organ development 2.04% (2/98) 4.92 0.002053 0.022989
GO:1901607 alpha-amino acid biosynthetic process 3.06% (3/98) 3.57 0.002147 0.023574
GO:0046907 intracellular transport 5.1% (5/98) 2.46 0.002302 0.024801
GO:0044281 small molecule metabolic process 8.16% (8/98) 1.78 0.002399 0.02491
GO:0031415 NatA complex 1.02% (1/98) 8.68 0.002443 0.024914
GO:0006099 tricarboxylic acid cycle 2.04% (2/98) 4.81 0.002384 0.025207
GO:0008652 amino acid biosynthetic process 3.06% (3/98) 3.46 0.002673 0.025434
GO:0009977 proton motive force dependent protein transmembrane transporter activity 1.02% (1/98) 8.58 0.002606 0.025657
GO:0033281 TAT protein transport complex 1.02% (1/98) 8.58 0.002606 0.025657
GO:0051649 establishment of localization in cell 5.1% (5/98) 2.41 0.002662 0.025765
GO:0008234 cysteine-type peptidase activity 3.06% (3/98) 3.43 0.002833 0.026516
GO:0044249 cellular biosynthetic process 9.18% (9/98) 1.61 0.002883 0.026551
GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity 1.02% (1/98) 8.33 0.003094 0.027605
GO:0009507 chloroplast 4.08% (4/98) 2.75 0.003087 0.027982
GO:0031090 organelle membrane 5.1% (5/98) 2.32 0.003403 0.028576
GO:0009536 plastid 4.08% (4/98) 2.71 0.003399 0.028967
GO:0031969 chloroplast membrane 2.04% (2/98) 4.57 0.003299 0.028984
GO:0009064 glutamine family amino acid metabolic process 2.04% (2/98) 4.56 0.003362 0.029087
GO:0048193 Golgi vesicle transport 3.06% (3/98) 3.26 0.003957 0.031827
GO:0004349 glutamate 5-kinase activity 1.02% (1/98) 8.0 0.003907 0.031867
GO:0034067 protein localization to Golgi apparatus 1.02% (1/98) 8.0 0.003907 0.031867
GO:0008535 respiratory chain complex IV assembly 1.02% (1/98) 7.88 0.004232 0.033099
GO:0033617 mitochondrial cytochrome c oxidase assembly 1.02% (1/98) 7.88 0.004232 0.033099
GO:0043953 protein transport by the Tat complex 1.02% (1/98) 7.72 0.004719 0.033264
GO:0009341 beta-galactosidase complex 1.02% (1/98) 7.72 0.004719 0.033264
GO:0070004 cysteine-type exopeptidase activity 1.02% (1/98) 7.72 0.004719 0.033264
GO:0005988 lactose metabolic process 1.02% (1/98) 7.83 0.004394 0.033453
GO:0005990 lactose catabolic process 1.02% (1/98) 7.83 0.004394 0.033453
GO:0098588 bounding membrane of organelle 4.08% (4/98) 2.59 0.004626 0.033861
GO:0003743 translation initiation factor activity 2.04% (2/98) 4.32 0.004613 0.034209
GO:0016807 cysteine-type carboxypeptidase activity 1.02% (1/98) 7.77 0.004556 0.034232
GO:1901576 organic substance biosynthetic process 9.18% (9/98) 1.49 0.004974 0.034635
GO:0008233 peptidase activity 5.1% (5/98) 2.18 0.005178 0.0352
GO:0071705 nitrogen compound transport 5.1% (5/98) 2.18 0.005147 0.035406
GO:0072594 establishment of protein localization to organelle 3.06% (3/98) 3.1 0.005396 0.036246
GO:0044238 primary metabolic process 24.49% (24/98) 0.77 0.005546 0.036826
GO:0006561 proline biosynthetic process 1.02% (1/98) 7.37 0.006016 0.039487
GO:0005464 UDP-xylose transmembrane transporter activity 1.02% (1/98) 7.33 0.006179 0.040091
GO:0071944 cell periphery 1.02% (1/98) 7.3 0.006341 0.040228
GO:0090150 establishment of protein localization to membrane 2.04% (2/98) 4.09 0.00628 0.040293
GO:0006091 generation of precursor metabolites and energy 3.06% (3/98) 3.0 0.006484 0.040687
GO:0061951 establishment of protein localization to plasma membrane 1.02% (1/98) 7.22 0.006665 0.04092
GO:0043001 Golgi to plasma membrane protein transport 1.02% (1/98) 7.22 0.006665 0.04092
GO:0009058 biosynthetic process 9.18% (9/98) 1.41 0.006903 0.041934
GO:0016831 carboxy-lyase activity 2.04% (2/98) 3.98 0.007328 0.042266
GO:1901575 organic substance catabolic process 6.12% (6/98) 1.83 0.007188 0.04231
GO:1990380 K48-linked deubiquitinase activity 1.02% (1/98) 7.12 0.007151 0.042532
GO:0019852 L-ascorbic acid metabolic process 1.02% (1/98) 7.09 0.007313 0.042607
GO:0044283 small molecule biosynthetic process 4.08% (4/98) 2.41 0.007091 0.042619
GO:1901336 lactone biosynthetic process 1.02% (1/98) 7.06 0.007475 0.04268
GO:0004350 glutamate-5-semialdehyde dehydrogenase activity 1.02% (1/98) 6.97 0.00796 0.044128
GO:1901605 alpha-amino acid metabolic process 3.06% (3/98) 2.9 0.007824 0.044231
GO:0004843 cysteine-type deubiquitinase activity 2.04% (2/98) 3.92 0.007936 0.044425
GO:0000139 Golgi membrane 2.04% (2/98) 3.85 0.008682 0.047668
GO:0016192 vesicle-mediated transport 4.08% (4/98) 2.32 0.008829 0.048015
GO:0043529 GET complex 1.02% (1/98) 6.77 0.009092 0.048519
GO:0101005 deubiquitinase activity 2.04% (2/98) 3.8 0.009297 0.048702
GO:0009056 catabolic process 6.12% (6/98) 1.76 0.009056 0.048781
GO:0006491 N-glycan processing 1.02% (1/98) 6.75 0.009254 0.048925
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (98) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms