Coexpression cluster: Cluster_1810 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009409 response to cold 10.48% (13/124) 9.04 0.0 0.0
GO:0042752 regulation of circadian rhythm 10.48% (13/124) 8.89 0.0 0.0
GO:0009266 response to temperature stimulus 10.48% (13/124) 6.58 0.0 0.0
GO:0009628 response to abiotic stimulus 10.48% (13/124) 5.09 0.0 0.0
GO:0050789 regulation of biological process 19.35% (24/124) 1.87 0.0 3e-06
GO:0065007 biological regulation 20.16% (25/124) 1.83 0.0 3e-06
GO:0009228 thiamine biosynthetic process 2.42% (3/124) 7.52 1e-06 4.1e-05
GO:0034309 primary alcohol biosynthetic process 2.42% (3/124) 7.52 1e-06 4.1e-05
GO:0019748 secondary metabolic process 4.03% (5/124) 4.87 1e-06 5.4e-05
GO:0006772 thiamine metabolic process 2.42% (3/124) 7.26 1e-06 5.8e-05
GO:0004185 serine-type carboxypeptidase activity 4.03% (5/124) 4.71 2e-06 7.4e-05
GO:0070008 serine-type exopeptidase activity 4.03% (5/124) 4.57 3e-06 8.7e-05
GO:0042724 thiamine-containing compound biosynthetic process 2.42% (3/124) 6.9 2e-06 8.8e-05
GO:0042723 thiamine-containing compound metabolic process 2.42% (3/124) 6.9 2e-06 8.8e-05
GO:0034308 primary alcohol metabolic process 2.42% (3/124) 6.81 3e-06 9.3e-05
GO:0008150 biological_process 47.58% (59/124) 0.77 2e-06 9.4e-05
GO:0004180 carboxypeptidase activity 4.03% (5/124) 4.48 4e-06 0.000104
GO:1901259 chloroplast rRNA processing 2.42% (3/124) 6.49 6e-06 0.000159
GO:0008238 exopeptidase activity 4.03% (5/124) 3.96 2e-05 0.00053
GO:0006950 response to stress 12.1% (15/124) 1.75 4.1e-05 0.00102
GO:0055035 plastid thylakoid membrane 3.23% (4/124) 4.38 4.6e-05 0.001034
GO:0009535 chloroplast thylakoid membrane 3.23% (4/124) 4.38 4.6e-05 0.001034
GO:0010099 regulation of photomorphogenesis 1.61% (2/124) 7.63 4.9e-05 0.001058
GO:0042651 thylakoid membrane 3.23% (4/124) 4.26 6.4e-05 0.001255
GO:0034357 photosynthetic membrane 3.23% (4/124) 4.26 6.4e-05 0.001255
GO:2000030 regulation of response to red or far red light 1.61% (2/124) 7.05 0.00011 0.002085
GO:0042364 water-soluble vitamin biosynthetic process 2.42% (3/124) 4.98 0.00013 0.00237
GO:0050896 response to stimulus 12.1% (15/124) 1.58 0.000157 0.002768
GO:0042170 plastid membrane 3.23% (4/124) 3.77 0.000234 0.003389
GO:0017171 serine hydrolase activity 4.03% (5/124) 3.24 0.000207 0.003404
GO:0008236 serine-type peptidase activity 4.03% (5/124) 3.24 0.000207 0.003404
GO:0006767 water-soluble vitamin metabolic process 2.42% (3/124) 4.71 0.000225 0.003463
GO:0009110 vitamin biosynthetic process 2.42% (3/124) 4.72 0.000218 0.003463
GO:0046165 alcohol biosynthetic process 2.42% (3/124) 4.69 0.000232 0.003465
GO:0072528 pyrimidine-containing compound biosynthetic process 2.42% (3/124) 4.66 0.000249 0.00351
GO:0072527 pyrimidine-containing compound metabolic process 2.42% (3/124) 4.54 0.000319 0.00414
GO:0016706 2-oxoglutarate-dependent dioxygenase activity 2.42% (3/124) 4.56 0.000303 0.004151
GO:0031968 organelle outer membrane 3.23% (4/124) 3.65 0.000319 0.004247
GO:0006766 vitamin metabolic process 2.42% (3/124) 4.49 0.000347 0.00438
GO:0019867 outer membrane 3.23% (4/124) 3.58 0.000383 0.004716
GO:0006812 monoatomic cation transport 4.03% (5/124) 2.87 0.000664 0.007617
GO:0051536 iron-sulfur cluster binding 2.42% (3/124) 4.18 0.000654 0.007672
GO:0051540 metal cluster binding 2.42% (3/124) 4.18 0.000654 0.007672
GO:0016746 acyltransferase activity 5.65% (7/124) 2.22 0.000835 0.009353
GO:0098655 monoatomic cation transmembrane transport 3.23% (4/124) 3.12 0.001242 0.012245
GO:2000026 regulation of multicellular organismal development 1.61% (2/124) 5.35 0.001144 0.012263
GO:0044272 sulfur compound biosynthetic process 2.42% (3/124) 3.88 0.001185 0.012429
GO:0048580 regulation of post-embryonic development 1.61% (2/124) 5.36 0.001135 0.012432
GO:0010100 negative regulation of photomorphogenesis 0.81% (1/124) 9.66 0.001237 0.01245
GO:0006811 monoatomic ion transport 4.03% (5/124) 2.67 0.001213 0.012461
GO:0098662 inorganic cation transmembrane transport 3.23% (4/124) 3.07 0.001426 0.013782
GO:0034220 monoatomic ion transmembrane transport 3.23% (4/124) 3.06 0.00146 0.013838
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups 4.03% (5/124) 2.59 0.001563 0.014543
GO:1901617 organic hydroxy compound biosynthetic process 2.42% (3/124) 3.71 0.001667 0.014946
GO:0006066 alcohol metabolic process 2.42% (3/124) 3.71 0.001655 0.015107
GO:0030001 metal ion transport 3.23% (4/124) 2.98 0.001793 0.015785
GO:0098660 inorganic ion transmembrane transport 3.23% (4/124) 2.96 0.001846 0.015967
GO:0051213 dioxygenase activity 2.42% (3/124) 3.64 0.001907 0.016206
GO:0051239 regulation of multicellular organismal process 1.61% (2/124) 4.93 0.00204 0.017045
GO:0008233 peptidase activity 4.84% (6/124) 2.1 0.002942 0.024175
GO:0000041 transition metal ion transport 1.61% (2/124) 4.36 0.004388 0.034894
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 0.81% (1/124) 7.85 0.004324 0.03495
GO:0070588 calcium ion transmembrane transport 1.61% (2/124) 4.31 0.004719 0.036929
GO:0006816 calcium ion transport 1.61% (2/124) 4.23 0.005236 0.040335
GO:0003729 mRNA binding 3.23% (4/124) 2.52 0.00551 0.041792
GO:0048581 negative regulation of post-embryonic development 0.81% (1/124) 7.29 0.006377 0.047635
GO:0003700 DNA-binding transcription factor activity 4.84% (6/124) 1.85 0.006814 0.049401
GO:0006807 nitrogen compound metabolic process 20.16% (25/124) 0.74 0.006759 0.049733
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (124) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms