Coexpression cluster: Cluster_2356 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0033523 histone H2B ubiquitination 3.57% (2/56) 8.87 9e-06 0.000474
GO:0033503 HULC complex 3.57% (2/56) 8.87 9e-06 0.000474
GO:0071894 histone H2B conserved C-terminal lysine ubiquitination 3.57% (2/56) 8.87 9e-06 0.000474
GO:0031371 ubiquitin conjugating enzyme complex 3.57% (2/56) 8.87 9e-06 0.000474
GO:0010390 histone monoubiquitination 3.57% (2/56) 8.87 9e-06 0.000474
GO:0003997 acyl-CoA oxidase activity 3.57% (2/56) 8.63 1.2e-05 0.00051
GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase 3.57% (2/56) 8.66 1.2e-05 0.000552
GO:0016574 histone ubiquitination 3.57% (2/56) 8.44 1.6e-05 0.000606
GO:0043227 membrane-bounded organelle 25.0% (14/56) 1.82 2.6e-05 0.00082
GO:0043231 intracellular membrane-bounded organelle 25.0% (14/56) 1.83 2.4e-05 0.000823
GO:0005634 nucleus 17.86% (10/56) 2.27 3.6e-05 0.001034
GO:0006513 protein monoubiquitination 3.57% (2/56) 7.79 3.9e-05 0.001063
GO:0031406 carboxylic acid binding 5.36% (3/56) 6.48 6e-06 0.001088
GO:0043177 organic acid binding 5.36% (3/56) 6.48 6e-06 0.001088
GO:0005504 fatty acid binding 3.57% (2/56) 7.41 6.7e-05 0.001571
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 3.57% (2/56) 7.45 6.4e-05 0.001597
GO:0008150 biological_process 51.79% (29/56) 0.9 0.000128 0.002547
GO:0043226 organelle 25.0% (14/56) 1.62 0.000124 0.002591
GO:0043229 intracellular organelle 25.0% (14/56) 1.62 0.000124 0.002741
GO:0033293 monocarboxylic acid binding 3.57% (2/56) 6.76 0.000164 0.003099
GO:0000151 ubiquitin ligase complex 5.36% (3/56) 4.33 0.000474 0.008514
GO:0055088 lipid homeostasis 3.57% (2/56) 5.95 0.000499 0.008546
GO:0006631 fatty acid metabolic process 5.36% (3/56) 4.2 0.000611 0.010016
GO:0018208 peptidyl-proline modification 3.57% (2/56) 5.76 0.000652 0.010234
GO:0006635 fatty acid beta-oxidation 3.57% (2/56) 5.6 0.000813 0.012264
GO:0019395 fatty acid oxidation 3.57% (2/56) 5.55 0.000869 0.012594
GO:0009062 fatty acid catabolic process 3.57% (2/56) 5.38 0.001103 0.015403
GO:1903352 L-ornithine transmembrane transport 1.79% (1/56) 9.14 0.001769 0.018527
GO:0000064 L-ornithine transmembrane transporter activity 1.79% (1/56) 9.14 0.001769 0.018527
GO:0015822 ornithine transport 1.79% (1/56) 9.14 0.001769 0.018527
GO:1990234 transferase complex 7.14% (4/56) 2.94 0.001851 0.018863
GO:0071949 FAD binding 3.57% (2/56) 5.2 0.001402 0.018881
GO:1902475 L-alpha-amino acid transmembrane transport 1.79% (1/56) 9.0 0.001955 0.0189
GO:0051052 regulation of DNA metabolic process 3.57% (2/56) 5.17 0.00146 0.018974
GO:0034440 lipid oxidation 3.57% (2/56) 4.97 0.001918 0.01903
GO:0044238 primary metabolic process 30.36% (17/56) 1.08 0.001715 0.019595
GO:1990575 mitochondrial L-ornithine transmembrane transport 1.79% (1/56) 9.22 0.001676 0.019747
GO:0072329 monocarboxylic acid catabolic process 3.57% (2/56) 5.08 0.001643 0.01998
GO:0008152 metabolic process 32.14% (18/56) 1.0 0.002161 0.02037
GO:0140535 intracellular protein-containing complex 7.14% (4/56) 3.0 0.001629 0.020475
GO:0034657 GID complex 1.79% (1/56) 8.75 0.002327 0.021399
GO:0004842 ubiquitin-protein transferase activity 5.36% (3/56) 3.5 0.002444 0.021939
GO:0015807 L-amino acid transport 1.79% (1/56) 8.44 0.002885 0.022196
GO:0016755 aminoacyltransferase activity 5.36% (3/56) 3.41 0.002879 0.022613
GO:0017009 protein-phycocyanobilin linkage 1.79% (1/56) 8.48 0.002792 0.022882
GO:0017007 protein-bilin linkage 1.79% (1/56) 8.48 0.002792 0.022882
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 3.57% (2/56) 4.68 0.002859 0.02293
GO:0005777 peroxisome 3.57% (2/56) 4.71 0.002714 0.023257
GO:0019787 ubiquitin-like protein transferase activity 5.36% (3/56) 3.45 0.002698 0.023657
GO:0071704 organic substance metabolic process 30.36% (17/56) 0.99 0.003303 0.024908
GO:0017006 protein-tetrapyrrole linkage 1.79% (1/56) 8.1 0.003628 0.026819
GO:0019842 vitamin binding 3.57% (2/56) 4.36 0.004388 0.031812
GO:0032787 monocarboxylic acid metabolic process 5.36% (3/56) 3.17 0.004611 0.032796
GO:0030941 chloroplast targeting sequence binding 1.79% (1/56) 7.66 0.004927 0.0344
GO:0031418 L-ascorbic acid binding 1.79% (1/56) 7.58 0.005205 0.035044
GO:1990745 EARP complex 1.79% (1/56) 7.58 0.005205 0.035044
GO:0031543 peptidyl-proline dioxygenase activity 1.79% (1/56) 7.07 0.007428 0.035449
GO:0019511 peptidyl-proline hydroxylation 1.79% (1/56) 7.07 0.007428 0.035449
GO:0004656 procollagen-proline 4-dioxygenase activity 1.79% (1/56) 7.1 0.007243 0.035463
GO:0019471 4-hydroxyproline metabolic process 1.79% (1/56) 7.1 0.007243 0.035463
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline 1.79% (1/56) 7.1 0.007243 0.035463
GO:0019798 procollagen-proline dioxygenase activity 1.79% (1/56) 7.1 0.007243 0.035463
GO:0031545 peptidyl-proline 4-dioxygenase activity 1.79% (1/56) 7.1 0.007243 0.035463
GO:0044255 cellular lipid metabolic process 7.14% (4/56) 2.49 0.005629 0.03597
GO:0004021 L-alanine:2-oxoglutarate aminotransferase activity 1.79% (1/56) 7.24 0.006595 0.036035
GO:0047635 alanine-oxo-acid transaminase activity 1.79% (1/56) 7.24 0.006595 0.036035
GO:0005956 protein kinase CK2 complex 1.79% (1/56) 7.24 0.006595 0.036035
GO:0016570 histone modification 3.57% (2/56) 4.16 0.005749 0.036124
GO:0042579 microbody 3.57% (2/56) 4.19 0.005467 0.036158
GO:0000398 mRNA splicing, via spliceosome 3.57% (2/56) 4.18 0.005585 0.036299
GO:0071763 nuclear membrane organization 1.79% (1/56) 7.2 0.00678 0.036517
GO:0044620 ACP phosphopantetheine attachment site binding 1.79% (1/56) 6.91 0.00826 0.036638
GO:0051192 prosthetic group binding 1.79% (1/56) 6.91 0.00826 0.036638
GO:0000036 acyl carrier activity 1.79% (1/56) 6.91 0.00826 0.036638
GO:0140414 phosphopantetheine-dependent carrier activity 1.79% (1/56) 6.91 0.00826 0.036638
GO:0110165 cellular anatomical entity 32.14% (18/56) 0.86 0.006277 0.036974
GO:2000779 regulation of double-strand break repair 1.79% (1/56) 7.16 0.006966 0.036986
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.57% (2/56) 4.1 0.006199 0.037097
GO:0044242 cellular lipid catabolic process 3.57% (2/56) 4.11 0.006123 0.037233
GO:0032993 protein-DNA complex 3.57% (2/56) 3.92 0.007907 0.037261
GO:0031492 nucleosomal DNA binding 1.79% (1/56) 7.37 0.00604 0.037326
GO:0016042 lipid catabolic process 3.57% (2/56) 4.06 0.006537 0.037341
GO:0003674 molecular_function 51.79% (29/56) 0.55 0.008531 0.037397
GO:0030258 lipid modification 3.57% (2/56) 4.07 0.006469 0.03752
GO:0000375 RNA splicing, via transesterification reactions 3.57% (2/56) 3.99 0.007217 0.037791
GO:0043531 ADP binding 7.14% (4/56) 2.34 0.008167 0.038012
GO:0006082 organic acid metabolic process 7.14% (4/56) 2.29 0.009151 0.038334
GO:0043436 oxoacid metabolic process 7.14% (4/56) 2.29 0.009126 0.038659
GO:0019752 carboxylic acid metabolic process 7.14% (4/56) 2.29 0.009038 0.038721
GO:0046395 carboxylic acid catabolic process 3.57% (2/56) 3.74 0.00999 0.038828
GO:0016054 organic acid catabolic process 3.57% (2/56) 3.74 0.00999 0.038828
GO:0008380 RNA splicing 3.57% (2/56) 3.75 0.009801 0.038896
GO:0045910 negative regulation of DNA recombination 1.79% (1/56) 6.79 0.009 0.038999
GO:0050660 flavin adenine dinucleotide binding 3.57% (2/56) 3.76 0.009731 0.039027
GO:0009987 cellular process 32.14% (18/56) 0.8 0.009693 0.039293
GO:0005575 cellular_component 33.93% (19/56) 0.76 0.010261 0.039473
GO:0061630 ubiquitin protein ligase activity 3.57% (2/56) 3.77 0.009637 0.039492
GO:0018126 protein hydroxylation 1.79% (1/56) 6.7 0.009554 0.03958
GO:0061659 ubiquitin-like protein ligase activity 3.57% (2/56) 3.71 0.010457 0.039822
GO:0031359 obsolete integral component of chloroplast outer membrane 1.79% (1/56) 6.51 0.010938 0.040034
GO:0032456 endocytic recycling 1.79% (1/56) 6.51 0.010938 0.040034
GO:0000018 regulation of DNA recombination 1.79% (1/56) 6.52 0.010845 0.040482
GO:0045036 protein targeting to chloroplast 1.79% (1/56) 6.52 0.010845 0.040482
GO:0008195 phosphatidate phosphatase activity 1.79% (1/56) 6.44 0.011491 0.041653
GO:0006282 regulation of DNA repair 1.79% (1/56) 6.29 0.012688 0.045555
GO:0042577 lipid phosphatase activity 1.79% (1/56) 6.25 0.013056 0.046434
GO:0006325 chromatin organization 3.57% (2/56) 3.52 0.013308 0.046891
GO:1902494 catalytic complex 7.14% (4/56) 2.12 0.013501 0.04713
GO:0032991 protein-containing complex 12.5% (7/56) 1.43 0.014468 0.049585
GO:0016607 nuclear speck 1.79% (1/56) 6.11 0.014343 0.049608
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (56) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms