Coexpression cluster: Cluster_2110 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009059 macromolecule biosynthetic process 13.58% (11/81) 3.43 0.0 2e-06
GO:0032991 protein-containing complex 23.46% (19/81) 2.34 0.0 2e-06
GO:0005840 ribosome 7.41% (6/81) 4.9 0.0 1.2e-05
GO:0005575 cellular_component 45.68% (37/81) 1.19 0.0 2.4e-05
GO:0004329 formate-tetrahydrofolate ligase activity 2.47% (2/81) 11.27 0.0 3.2e-05
GO:0008150 biological_process 54.32% (44/81) 0.97 0.0 4.6e-05
GO:0044249 cellular biosynthetic process 16.05% (13/81) 2.41 1e-06 7.7e-05
GO:0005853 eukaryotic translation elongation factor 1 complex 2.47% (2/81) 10.27 1e-06 8.7e-05
GO:0003723 RNA binding 13.58% (11/81) 2.62 2e-06 0.000113
GO:0009987 cellular process 40.74% (33/81) 1.14 3e-06 0.000135
GO:1901576 organic substance biosynthetic process 16.05% (13/81) 2.29 2e-06 0.000136
GO:0005198 structural molecule activity 7.41% (6/81) 3.96 3e-06 0.000138
GO:0003735 structural constituent of ribosome 6.17% (5/81) 4.41 4e-06 0.00017
GO:0003676 nucleic acid binding 22.22% (18/81) 1.76 4e-06 0.000179
GO:0031966 mitochondrial membrane 4.94% (4/81) 5.2 5e-06 0.00018
GO:0009058 biosynthetic process 16.05% (13/81) 2.22 4e-06 0.000184
GO:0043226 organelle 24.69% (20/81) 1.6 6e-06 0.000193
GO:0043228 non-membrane-bounded organelle 9.88% (8/81) 2.98 8e-06 0.000199
GO:0110165 cellular anatomical entity 38.27% (31/81) 1.11 1e-05 0.0002
GO:0003746 translation elongation factor activity 3.7% (3/81) 6.43 7e-06 0.000201
GO:0006412 translation 6.17% (5/81) 4.23 8e-06 0.000201
GO:1990904 ribonucleoprotein complex 8.64% (7/81) 3.33 7e-06 0.000201
GO:0010468 regulation of gene expression 14.81% (12/81) 2.26 7e-06 0.000202
GO:0009889 regulation of biosynthetic process 14.81% (12/81) 2.23 9e-06 0.000202
GO:0043229 intracellular organelle 24.69% (20/81) 1.6 6e-06 0.000204
GO:0010556 regulation of macromolecule biosynthetic process 14.81% (12/81) 2.25 8e-06 0.000206
GO:0043232 intracellular non-membrane-bounded organelle 9.88% (8/81) 2.98 8e-06 0.000207
GO:0031326 regulation of cellular biosynthetic process 14.81% (12/81) 2.23 9e-06 0.000208
GO:0043043 peptide biosynthetic process 6.17% (5/81) 4.11 1.2e-05 0.000241
GO:0009891 positive regulation of biosynthetic process 6.17% (5/81) 4.01 1.7e-05 0.000288
GO:0031328 positive regulation of cellular biosynthetic process 6.17% (5/81) 4.01 1.7e-05 0.000288
GO:0010557 positive regulation of macromolecule biosynthetic process 6.17% (5/81) 4.01 1.7e-05 0.000288
GO:0140021 mitochondrial ADP transmembrane transport 2.47% (2/81) 8.46 1.5e-05 0.000291
GO:1990544 mitochondrial ATP transmembrane transport 2.47% (2/81) 8.46 1.5e-05 0.000291
GO:0060255 regulation of macromolecule metabolic process 14.81% (12/81) 2.12 1.9e-05 0.000319
GO:0006414 translational elongation 3.7% (3/81) 5.88 2e-05 0.000322
GO:0031323 regulation of cellular metabolic process 14.81% (12/81) 2.11 2e-05 0.000329
GO:0022627 cytosolic small ribosomal subunit 3.7% (3/81) 5.83 2.2e-05 0.000344
GO:0006518 peptide metabolic process 6.17% (5/81) 3.85 2.8e-05 0.000396
GO:0003674 molecular_function 58.02% (47/81) 0.71 2.6e-05 0.000396
GO:0019222 regulation of metabolic process 14.81% (12/81) 2.07 2.7e-05 0.000403
GO:0005488 binding 43.21% (35/81) 0.94 2.9e-05 0.000407
GO:0044391 ribosomal subunit 4.94% (4/81) 4.5 3.3e-05 0.000453
GO:0044271 cellular nitrogen compound biosynthetic process 9.88% (8/81) 2.7 3.4e-05 0.000455
GO:0015867 ATP transport 2.47% (2/81) 7.79 3.9e-05 0.000492
GO:0005471 ATP:ADP antiporter activity 2.47% (2/81) 7.79 3.9e-05 0.000492
GO:0015866 ADP transport 2.47% (2/81) 7.79 3.9e-05 0.000492
GO:0005743 mitochondrial inner membrane 3.7% (3/81) 5.5 4.4e-05 0.000528
GO:0043604 amide biosynthetic process 6.17% (5/81) 3.72 4.3e-05 0.000529
GO:0031325 positive regulation of cellular metabolic process 6.17% (5/81) 3.7 4.6e-05 0.000545
GO:0015935 small ribosomal subunit 3.7% (3/81) 5.41 5.3e-05 0.000614
GO:0015217 ADP transmembrane transporter activity 2.47% (2/81) 7.54 5.6e-05 0.000635
GO:0048522 positive regulation of cellular process 6.17% (5/81) 3.52 8.2e-05 0.000894
GO:0015868 purine ribonucleotide transport 2.47% (2/81) 7.27 8.1e-05 0.000897
GO:0016602 CCAAT-binding factor complex 2.47% (2/81) 7.2 9e-05 0.000924
GO:0072530 purine-containing compound transmembrane transport 2.47% (2/81) 7.2 9e-05 0.000924
GO:0009893 positive regulation of metabolic process 6.17% (5/81) 3.48 9.5e-05 0.000924
GO:1901679 nucleotide transmembrane transport 2.47% (2/81) 7.18 9.2e-05 0.000926
GO:0019866 organelle inner membrane 3.7% (3/81) 5.17 8.8e-05 0.000936
GO:0010604 positive regulation of macromolecule metabolic process 6.17% (5/81) 3.48 9.4e-05 0.000937
GO:0003729 mRNA binding 6.17% (5/81) 3.45 0.000101 0.000973
GO:0006839 mitochondrial transport 3.7% (3/81) 5.08 0.000105 0.000993
GO:0005347 ATP transmembrane transporter activity 2.47% (2/81) 7.0 0.000118 0.001085
GO:0051171 regulation of nitrogen compound metabolic process 12.35% (10/81) 2.09 0.000118 0.001099
GO:0080090 regulation of primary metabolic process 12.35% (10/81) 2.08 0.000128 0.00115
GO:0033218 amide binding 3.7% (3/81) 4.93 0.000143 0.00127
GO:0051503 adenine nucleotide transport 2.47% (2/81) 6.73 0.000172 0.001465
GO:0015865 purine nucleotide transport 2.47% (2/81) 6.73 0.000172 0.001465
GO:0043603 amide metabolic process 6.17% (5/81) 3.29 0.000169 0.00148
GO:0048518 positive regulation of biological process 6.17% (5/81) 3.26 0.00019 0.001594
GO:0006357 regulation of transcription by RNA polymerase II 6.17% (5/81) 3.22 0.000216 0.001779
GO:0005346 purine ribonucleotide transmembrane transporter activity 2.47% (2/81) 6.54 0.000222 0.001809
GO:0051234 establishment of localization 13.58% (11/81) 1.81 0.000296 0.002377
GO:0008135 translation factor activity, RNA binding 3.7% (3/81) 4.53 0.000322 0.002387
GO:0090079 translation regulator activity, nucleic acid binding 3.7% (3/81) 4.53 0.000322 0.002387
GO:0000295 adenine nucleotide transmembrane transporter activity 2.47% (2/81) 6.29 0.000314 0.002418
GO:0015216 purine nucleotide transmembrane transporter activity 2.47% (2/81) 6.29 0.000314 0.002418
GO:0071705 nitrogen compound transport 7.41% (6/81) 2.72 0.000319 0.002428
GO:0097159 organic cyclic compound binding 29.63% (24/81) 1.05 0.000314 0.002483
GO:0051179 localization 13.58% (11/81) 1.75 0.000404 0.002956
GO:0015215 nucleotide transmembrane transporter activity 2.47% (2/81) 6.07 0.000428 0.003096
GO:0006862 nucleotide transport 2.47% (2/81) 6.05 0.00044 0.003141
GO:0045182 translation regulator activity 3.7% (3/81) 4.35 0.000462 0.00326
GO:0015605 organophosphate ester transmembrane transporter activity 2.47% (2/81) 5.99 0.000479 0.003344
GO:1901566 organonitrogen compound biosynthetic process 7.41% (6/81) 2.58 0.000537 0.003705
GO:0050794 regulation of cellular process 14.81% (12/81) 1.56 0.000738 0.005027
GO:0006810 transport 12.35% (10/81) 1.73 0.000836 0.005632
GO:0051252 regulation of RNA metabolic process 9.88% (8/81) 2.01 0.000863 0.005746
GO:1901264 carbohydrate derivative transport 2.47% (2/81) 5.52 0.000913 0.006011
GO:0071702 organic substance transport 7.41% (6/81) 2.39 0.001038 0.006756
GO:0005829 cytosol 7.41% (6/81) 2.38 0.001066 0.00679
GO:0048578 positive regulation of long-day photoperiodism, flowering 1.23% (1/81) 9.86 0.001078 0.006791
GO:0030684 preribosome 3.7% (3/81) 3.92 0.001092 0.006805
GO:0019219 regulation of nucleobase-containing compound metabolic process 9.88% (8/81) 1.95 0.00111 0.006847
GO:0051173 positive regulation of nitrogen compound metabolic process 4.94% (4/81) 3.17 0.001065 0.006856
GO:0050789 regulation of biological process 14.81% (12/81) 1.48 0.001129 0.006893
GO:0034641 cellular nitrogen compound metabolic process 14.81% (12/81) 1.47 0.001222 0.007385
GO:0005085 guanyl-nucleotide exchange factor activity 2.47% (2/81) 5.26 0.001296 0.007749
GO:0048255 mRNA stabilization 1.23% (1/81) 9.54 0.001347 0.007816
GO:0008863 formate dehydrogenase (NAD+) activity 1.23% (1/81) 9.54 0.001347 0.007816
GO:1902373 negative regulation of mRNA catabolic process 1.23% (1/81) 9.54 0.001347 0.007816
GO:0010628 positive regulation of gene expression 2.47% (2/81) 5.22 0.001376 0.007829
GO:0140513 nuclear protein-containing complex 7.41% (6/81) 2.31 0.001373 0.007888
GO:0048582 positive regulation of post-embryonic development 1.23% (1/81) 9.4 0.001482 0.008269
GO:0031090 organelle membrane 6.17% (5/81) 2.6 0.001479 0.008335
GO:0061024 membrane organization 3.7% (3/81) 3.7 0.001685 0.009317
GO:0010608 post-transcriptional regulation of gene expression 3.7% (3/81) 3.66 0.001802 0.009868
GO:0030906 retromer, cargo-selective complex 1.23% (1/81) 9.05 0.001885 0.01023
GO:0007005 mitochondrion organization 2.47% (2/81) 4.95 0.001987 0.01068
GO:0065007 biological regulation 14.81% (12/81) 1.38 0.002053 0.010937
GO:0045893 positive regulation of DNA-templated transcription 3.7% (3/81) 3.56 0.002188 0.011345
GO:1902680 positive regulation of RNA biosynthetic process 3.7% (3/81) 3.56 0.002188 0.011345
GO:0042788 polysomal ribosome 1.23% (1/81) 8.86 0.002155 0.011374
GO:0005048 signal sequence binding 2.47% (2/81) 4.82 0.002376 0.012211
GO:0043170 macromolecule metabolic process 22.22% (18/81) 1.03 0.002426 0.012363
GO:0042277 peptide binding 2.47% (2/81) 4.7 0.002769 0.013988
GO:0006355 regulation of DNA-templated transcription 8.64% (7/81) 1.89 0.002917 0.014484
GO:2001141 regulation of RNA biosynthetic process 8.64% (7/81) 1.89 0.002917 0.014484
GO:0045901 positive regulation of translational elongation 1.23% (1/81) 8.4 0.002961 0.014582
GO:0051094 positive regulation of developmental process 1.23% (1/81) 8.33 0.003096 0.014748
GO:0051240 positive regulation of multicellular organismal process 1.23% (1/81) 8.33 0.003096 0.014748
GO:0043130 ubiquitin binding 2.47% (2/81) 4.63 0.003041 0.014848
GO:0072594 establishment of protein localization to organelle 3.7% (3/81) 3.37 0.003166 0.01496
GO:1901505 carbohydrate derivative transmembrane transporter activity 2.47% (2/81) 4.62 0.00309 0.014966
GO:0015748 organophosphate ester transport 2.47% (2/81) 4.59 0.003242 0.015198
GO:0032182 ubiquitin-like protein binding 2.47% (2/81) 4.56 0.003334 0.015508
GO:0005854 nascent polypeptide-associated complex 1.23% (1/81) 8.21 0.003364 0.015524
GO:0015932 nucleobase-containing compound transmembrane transporter activity 2.47% (2/81) 4.51 0.003587 0.016296
GO:1903312 negative regulation of mRNA metabolic process 1.23% (1/81) 8.1 0.003633 0.016377
GO:0051254 positive regulation of RNA metabolic process 3.7% (3/81) 3.31 0.003581 0.016392
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain 1.23% (1/81) 8.0 0.003902 0.017453
GO:0033365 protein localization to organelle 3.7% (3/81) 3.26 0.003947 0.017521
GO:0048586 regulation of long-day photoperiodism, flowering 1.23% (1/81) 7.95 0.004036 0.017782
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 3.7% (3/81) 3.23 0.004172 0.018245
GO:0051641 cellular localization 6.17% (5/81) 2.22 0.004544 0.019725
GO:0045184 establishment of protein localization 4.94% (4/81) 2.56 0.004886 0.021051
GO:0044237 cellular metabolic process 22.22% (18/81) 0.92 0.005366 0.022953
GO:0090575 RNA polymerase II transcription regulator complex 2.47% (2/81) 4.2 0.005466 0.02321
GO:0030904 retromer complex 1.23% (1/81) 7.5 0.005512 0.023237
GO:0046051 UTP metabolic process 1.23% (1/81) 7.4 0.005914 0.023416
GO:0006448 regulation of translational elongation 1.23% (1/81) 7.4 0.005914 0.023416
GO:0033180 proton-transporting V-type ATPase, V1 domain 1.23% (1/81) 7.4 0.005914 0.023416
GO:0006449 regulation of translational termination 1.23% (1/81) 7.4 0.005914 0.023416
GO:0006228 UTP biosynthetic process 1.23% (1/81) 7.4 0.005914 0.023416
GO:0043243 positive regulation of protein-containing complex disassembly 1.23% (1/81) 7.46 0.005646 0.023464
GO:0045905 positive regulation of translational termination 1.23% (1/81) 7.46 0.005646 0.023464
GO:0016043 cellular component organization 8.64% (7/81) 1.71 0.005719 0.023599
GO:0016197 endosomal transport 2.47% (2/81) 4.07 0.006456 0.023647
GO:0043489 RNA stabilization 1.23% (1/81) 7.43 0.00578 0.023685
GO:0120017 ceramide transfer activity 1.23% (1/81) 7.27 0.00645 0.023771
GO:0035627 ceramide transport 1.23% (1/81) 7.27 0.00645 0.023771
GO:0046624 sphingolipid transporter activity 1.23% (1/81) 7.27 0.00645 0.023771
GO:0046625 sphingolipid binding 1.23% (1/81) 7.27 0.00645 0.023771
GO:0097001 ceramide binding 1.23% (1/81) 7.27 0.00645 0.023771
GO:0120016 sphingolipid transfer activity 1.23% (1/81) 7.27 0.00645 0.023771
GO:1902387 ceramide 1-phosphate binding 1.23% (1/81) 7.27 0.00645 0.023771
GO:1902388 ceramide 1-phosphate transfer activity 1.23% (1/81) 7.27 0.00645 0.023771
GO:0045039 protein insertion into mitochondrial inner membrane 1.23% (1/81) 7.33 0.006182 0.024313
GO:0036257 multivesicular body organization 1.23% (1/81) 7.18 0.006851 0.024333
GO:0036258 multivesicular body assembly 1.23% (1/81) 7.18 0.006851 0.024333
GO:0070676 intralumenal vesicle formation 1.23% (1/81) 7.18 0.006851 0.024333
GO:0034248 regulation of amide metabolic process 2.47% (2/81) 4.04 0.006741 0.024384
GO:0006417 regulation of translation 2.47% (2/81) 4.04 0.006741 0.024384
GO:0045293 mRNA editing complex 1.23% (1/81) 7.3 0.006316 0.02451
GO:0036396 RNA N6-methyladenosine methyltransferase complex 1.23% (1/81) 7.3 0.006316 0.02451
GO:0008104 protein localization 4.94% (4/81) 2.4 0.007119 0.024833
GO:0046907 intracellular transport 4.94% (4/81) 2.41 0.007037 0.024841
GO:0120009 intermembrane lipid transfer 1.23% (1/81) 7.1 0.007253 0.024856
GO:0070727 cellular macromolecule localization 4.94% (4/81) 2.4 0.007176 0.024883
GO:0033036 macromolecule localization 4.94% (4/81) 2.4 0.007225 0.024904
GO:0030941 chloroplast targeting sequence binding 1.23% (1/81) 7.13 0.007119 0.024981
GO:0080009 mRNA methylation 1.23% (1/81) 7.02 0.007655 0.026079
GO:0010497 plasmodesmata-mediated intercellular transport 1.23% (1/81) 7.0 0.007788 0.026381
GO:0051649 establishment of localization in cell 4.94% (4/81) 2.36 0.007906 0.026626
GO:0046039 GTP metabolic process 1.23% (1/81) 6.9 0.008323 0.027712
GO:0006183 GTP biosynthetic process 1.23% (1/81) 6.9 0.008323 0.027712
GO:0030042 actin filament depolymerization 1.23% (1/81) 6.83 0.008724 0.028721
GO:2000028 regulation of photoperiodism, flowering 1.23% (1/81) 6.83 0.008724 0.028721
GO:0006886 intracellular protein transport 3.7% (3/81) 2.79 0.009638 0.031552
GO:0045944 positive regulation of transcription by RNA polymerase II 2.47% (2/81) 3.76 0.009771 0.031811
GO:0071840 cellular component organization or biogenesis 8.64% (7/81) 1.55 0.010092 0.032674
GO:0070402 NADPH binding 1.23% (1/81) 6.55 0.010593 0.034108
GO:0043231 intracellular membrane-bounded organelle 14.81% (12/81) 1.08 0.010728 0.034354
GO:0004550 nucleoside diphosphate kinase activity 1.23% (1/81) 6.52 0.01086 0.0344
GO:0010496 intercellular transport 1.23% (1/81) 6.52 0.01086 0.0344
GO:1902369 negative regulation of RNA catabolic process 1.23% (1/81) 6.5 0.010993 0.034635
GO:2000243 positive regulation of reproductive process 1.23% (1/81) 6.48 0.011127 0.034868
GO:0043227 membrane-bounded organelle 14.81% (12/81) 1.07 0.011342 0.035353
GO:0000813 ESCRT I complex 1.23% (1/81) 6.43 0.011527 0.035739
GO:0015931 nucleobase-containing compound transport 2.47% (2/81) 3.59 0.012206 0.037448
GO:0000339 RNA cap binding 1.23% (1/81) 6.35 0.012193 0.037605
GO:0060589 nucleoside-triphosphatase regulator activity 2.47% (2/81) 3.58 0.012451 0.037804
GO:0030695 GTPase regulator activity 2.47% (2/81) 3.58 0.012451 0.037804
GO:0030234 enzyme regulator activity 3.7% (3/81) 2.65 0.01255 0.037908
GO:0016879 ligase activity, forming carbon-nitrogen bonds 2.47% (2/81) 3.55 0.012852 0.038424
GO:0010605 negative regulation of macromolecule metabolic process 3.7% (3/81) 2.63 0.012805 0.03848
GO:0009723 response to ethylene 1.23% (1/81) 6.26 0.012991 0.038645
GO:0098656 monoatomic anion transmembrane transport 1.23% (1/81) 6.24 0.013125 0.038843
GO:0031324 negative regulation of cellular metabolic process 3.7% (3/81) 2.61 0.013362 0.039349
GO:0009892 negative regulation of metabolic process 3.7% (3/81) 2.6 0.013558 0.039527
GO:0008878 glucose-1-phosphate adenylyltransferase activity 1.23% (1/81) 6.2 0.013524 0.039624
GO:0016070 RNA metabolic process 7.41% (6/81) 1.61 0.014093 0.040885
GO:0031330 negative regulation of cellular catabolic process 1.23% (1/81) 6.09 0.014587 0.042109
GO:0098772 molecular function regulator activity 3.7% (3/81) 2.55 0.014869 0.042503
GO:0090151 establishment of protein localization to mitochondrial membrane 1.23% (1/81) 6.06 0.014853 0.042665
GO:0005978 glycogen biosynthetic process 1.23% (1/81) 6.04 0.015118 0.043007
GO:0005543 phospholipid binding 2.47% (2/81) 3.41 0.015393 0.043576
GO:0120014 phospholipid transfer activity 1.23% (1/81) 5.96 0.015915 0.04358
GO:0009895 negative regulation of catabolic process 1.23% (1/81) 5.96 0.015915 0.04358
GO:0008514 organic anion transmembrane transporter activity 2.47% (2/81) 3.41 0.015476 0.043601
GO:0031359 obsolete integral component of chloroplast outer membrane 1.23% (1/81) 5.97 0.015782 0.043624
GO:0007007 inner mitochondrial membrane organization 1.23% (1/81) 5.97 0.015782 0.043624
GO:0031902 late endosome membrane 1.23% (1/81) 5.97 0.015782 0.043624
GO:0045036 protein targeting to chloroplast 1.23% (1/81) 5.99 0.015649 0.043878
GO:0007006 mitochondrial membrane organization 1.23% (1/81) 5.91 0.016445 0.044823
GO:0043244 regulation of protein-containing complex disassembly 1.23% (1/81) 5.89 0.01671 0.045126
GO:0120013 lipid transfer activity 1.23% (1/81) 5.89 0.01671 0.045126
GO:0015031 protein transport 3.7% (3/81) 2.45 0.017825 0.047914
GO:0015711 organic anion transport 2.47% (2/81) 3.3 0.01793 0.047978
GO:0071704 organic substance metabolic process 24.69% (20/81) 0.69 0.018267 0.048656
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 2.47% (2/81) 3.27 0.018602 0.049324
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (81) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms