Coexpression cluster: Cluster_1055 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043687 post-translational protein modification 9.76% (8/82) 3.15 4e-06 0.002002
GO:0043227 membrane-bounded organelle 21.95% (18/82) 1.64 1.4e-05 0.003781
GO:0005575 cellular_component 40.24% (33/82) 1.01 2.1e-05 0.003839
GO:0003674 molecular_function 56.1% (46/82) 0.67 0.0001 0.006086
GO:0043231 intracellular membrane-bounded organelle 20.73% (17/82) 1.56 4.7e-05 0.00642
GO:0070647 protein modification by small protein conjugation or removal 7.32% (6/82) 3.04 9.9e-05 0.006759
GO:0043226 organelle 21.95% (18/82) 1.43 9.1e-05 0.007093
GO:0043229 intracellular organelle 21.95% (18/82) 1.43 9.1e-05 0.008264
GO:0006801 superoxide metabolic process 2.44% (2/82) 7.25 8.3e-05 0.009099
GO:0008150 biological_process 46.34% (38/82) 0.74 0.000267 0.012151
GO:0110165 cellular anatomical entity 34.15% (28/82) 0.95 0.000255 0.012664
GO:0061650 ubiquitin-like protein conjugating enzyme activity 2.44% (2/82) 6.26 0.000328 0.013809
GO:0005488 binding 40.24% (33/82) 0.83 0.000253 0.013813
GO:0016755 aminoacyltransferase activity 4.88% (4/82) 3.28 0.000814 0.019365
GO:0045861 negative regulation of proteolysis 1.22% (1/82) 9.67 0.001227 0.019747
GO:1903051 negative regulation of proteolysis involved in protein catabolic process 1.22% (1/82) 9.67 0.001227 0.019747
GO:1903094 negative regulation of protein K48-linked deubiquitination 1.22% (1/82) 9.67 0.001227 0.019747
GO:1901799 negative regulation of proteasomal protein catabolic process 1.22% (1/82) 9.67 0.001227 0.019747
GO:0090086 negative regulation of protein deubiquitination 1.22% (1/82) 9.67 0.001227 0.019747
GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process 1.22% (1/82) 9.67 0.001227 0.019747
GO:2000059 negative regulation of ubiquitin-dependent protein catabolic process 1.22% (1/82) 9.67 0.001227 0.019747
GO:0036435 K48-linked polyubiquitin modification-dependent protein binding 1.22% (1/82) 9.67 0.001227 0.019747
GO:0042177 negative regulation of protein catabolic process 1.22% (1/82) 9.67 0.001227 0.019747
GO:0090085 regulation of protein deubiquitination 1.22% (1/82) 9.67 0.001227 0.019747
GO:1903093 regulation of protein K48-linked deubiquitination 1.22% (1/82) 9.67 0.001227 0.019747
GO:0008152 metabolic process 30.49% (25/82) 0.93 0.000807 0.020069
GO:0019538 protein metabolic process 17.07% (14/82) 1.4 0.000777 0.020234
GO:0019787 ubiquitin-like protein transferase activity 4.88% (4/82) 3.31 0.000748 0.020446
GO:0015700 arsenite transport 1.22% (1/82) 10.52 0.000682 0.020728
GO:0015105 arsenite transmembrane transporter activity 1.22% (1/82) 10.52 0.000682 0.020728
GO:0036211 protein modification process 14.63% (12/82) 1.56 0.000724 0.020854
GO:0043412 macromolecule modification 15.85% (13/82) 1.49 0.00066 0.022563
GO:0016570 histone modification 3.66% (3/82) 4.19 0.000631 0.023025
GO:0140030 modification-dependent protein binding 2.44% (2/82) 5.81 0.00061 0.02383
GO:1901564 organonitrogen compound metabolic process 18.29% (15/82) 1.14 0.002862 0.034794
GO:0006165 obsolete nucleoside diphosphate phosphorylation 1.22% (1/82) 8.59 0.002589 0.035411
GO:1903321 negative regulation of protein modification by small protein conjugation or removal 1.22% (1/82) 8.59 0.002589 0.035411
GO:0031397 negative regulation of protein ubiquitination 1.22% (1/82) 8.59 0.002589 0.035411
GO:0140034 methylation-dependent protein binding 1.22% (1/82) 8.45 0.002862 0.035576
GO:0035064 methylated histone binding 1.22% (1/82) 8.45 0.002862 0.035576
GO:0044238 primary metabolic process 26.83% (22/82) 0.9 0.002361 0.035874
GO:0061656 SUMO conjugating enzyme activity 1.22% (1/82) 8.75 0.002317 0.036215
GO:0006625 protein targeting to peroxisome 1.22% (1/82) 8.67 0.002453 0.03627
GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity 1.22% (1/82) 8.25 0.00327 0.036502
GO:0051484 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process 1.22% (1/82) 8.25 0.00327 0.036502
GO:0012505 endomembrane system 2.44% (2/82) 4.62 0.003094 0.036795
GO:0072593 reactive oxygen species metabolic process 2.44% (2/82) 4.68 0.002846 0.037068
GO:0005739 mitochondrion 4.88% (4/82) 2.73 0.003214 0.0374
GO:0032446 protein modification by small protein conjugation 4.88% (4/82) 2.78 0.002846 0.03797
GO:0010078 maintenance of root meristem identity 1.22% (1/82) 7.48 0.00558 0.046954
GO:0098727 maintenance of cell number 1.22% (1/82) 7.48 0.00558 0.046954
GO:0090421 embryonic meristem initiation 1.22% (1/82) 7.48 0.00558 0.046954
GO:0019827 stem cell population maintenance 1.22% (1/82) 7.48 0.00558 0.046954
GO:0010074 maintenance of meristem identity 1.22% (1/82) 7.48 0.00558 0.046954
GO:0010071 root meristem specification 1.22% (1/82) 7.48 0.00558 0.046954
GO:0010492 maintenance of shoot apical meristem identity 1.22% (1/82) 7.48 0.00558 0.046954
GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor 1.22% (1/82) 7.75 0.004629 0.047776
GO:0019789 SUMO transferase activity 1.22% (1/82) 7.75 0.004629 0.047776
GO:0004784 superoxide dismutase activity 1.22% (1/82) 7.75 0.004629 0.047776
GO:0071704 organic substance metabolic process 26.83% (22/82) 0.81 0.004998 0.047967
GO:0004134 4-alpha-glucanotransferase activity 1.22% (1/82) 7.71 0.004765 0.048268
GO:0005737 cytoplasm 9.76% (8/82) 1.6 0.00498 0.048646
GO:0043966 histone H3 acetylation 1.22% (1/82) 7.67 0.004901 0.048741
GO:0005460 UDP-glucose transmembrane transporter activity 1.22% (1/82) 7.79 0.004493 0.049157
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (82) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms