Coexpression cluster: Cluster_2355 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005996 monosaccharide metabolic process 6.06% (4/66) 4.79 1.5e-05 0.0011
GO:0098869 cellular oxidant detoxification 3.03% (2/66) 8.57 1.3e-05 0.001194
GO:0016672 oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor 3.03% (2/66) 8.9 8e-06 0.001241
GO:0045174 glutathione dehydrogenase (ascorbate) activity 3.03% (2/66) 8.9 8e-06 0.001241
GO:0033355 ascorbate glutathione cycle 3.03% (2/66) 8.9 8e-06 0.001241
GO:0019852 L-ascorbic acid metabolic process 3.03% (2/66) 8.66 1.2e-05 0.00131
GO:0042797 tRNA transcription by RNA polymerase III 3.03% (2/66) 8.06 2.7e-05 0.001505
GO:0009304 tRNA transcription 3.03% (2/66) 8.06 2.7e-05 0.001505
GO:1901334 lactone metabolic process 3.03% (2/66) 7.76 4.1e-05 0.002045
GO:0032991 protein-containing complex 18.18% (12/66) 1.97 4.6e-05 0.002054
GO:0015038 glutathione disulfide oxidoreductase activity 3.03% (2/66) 7.37 7.1e-05 0.002633
GO:0010731 protein glutathionylation 3.03% (2/66) 7.41 6.7e-05 0.002717
GO:0044238 primary metabolic process 33.33% (22/66) 1.21 8.6e-05 0.00294
GO:0071704 organic substance metabolic process 33.33% (22/66) 1.12 0.00021 0.006714
GO:0098781 ncRNA transcription 3.03% (2/66) 6.4 0.000272 0.007144
GO:1990748 cellular detoxification 3.03% (2/66) 6.49 0.00024 0.007156
GO:0005737 cytoplasm 13.64% (9/66) 2.08 0.000263 0.00734
GO:0015036 disulfide oxidoreductase activity 3.03% (2/66) 6.3 0.000311 0.007711
GO:0044237 cellular metabolic process 27.27% (18/66) 1.22 0.000448 0.008699
GO:0005666 RNA polymerase III complex 3.03% (2/66) 6.06 0.000433 0.008791
GO:0008152 metabolic process 33.33% (22/66) 1.06 0.000421 0.008967
GO:0098754 detoxification 3.03% (2/66) 6.09 0.000414 0.009253
GO:0002181 cytoplasmic translation 3.03% (2/66) 6.11 0.000402 0.009453
GO:0005575 cellular_component 37.88% (25/66) 0.92 0.0006 0.010735
GO:0006383 transcription by RNA polymerase III 3.03% (2/66) 5.84 0.000582 0.010837
GO:0006807 nitrogen compound metabolic process 27.27% (18/66) 1.18 0.000632 0.010872
GO:0008150 biological_process 46.97% (31/66) 0.76 0.000711 0.010952
GO:0003677 DNA binding 12.12% (8/66) 2.04 0.000709 0.011325
GO:0097159 organic cyclic compound binding 30.3% (20/66) 1.08 0.000699 0.011565
GO:0009987 cellular process 34.85% (23/66) 0.92 0.001141 0.016449
GO:0003674 molecular_function 54.55% (36/66) 0.63 0.001105 0.016462
GO:0042743 hydrogen peroxide metabolic process 3.03% (2/66) 5.26 0.001299 0.017591
GO:0042744 hydrogen peroxide catabolic process 3.03% (2/66) 5.26 0.001299 0.017591
GO:0072594 establishment of protein localization to organelle 4.55% (3/66) 3.67 0.001767 0.019742
GO:0043170 macromolecule metabolic process 24.24% (16/66) 1.15 0.001601 0.019885
GO:0009059 macromolecule biosynthetic process 7.58% (5/66) 2.58 0.001514 0.019898
GO:0046483 heterocycle metabolic process 15.15% (10/66) 1.59 0.001653 0.019968
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 3.03% (2/66) 5.05 0.001713 0.02015
GO:0005488 binding 39.39% (26/66) 0.8 0.001578 0.020159
GO:0006767 water-soluble vitamin metabolic process 3.03% (2/66) 5.03 0.001762 0.0202
GO:0072593 reactive oxygen species metabolic process 3.03% (2/66) 5.0 0.001857 0.020244
GO:1901360 organic cyclic compound metabolic process 15.15% (10/66) 1.51 0.002416 0.022982
GO:0022625 cytosolic large ribosomal subunit 3.03% (2/66) 4.81 0.002386 0.023187
GO:0033365 protein localization to organelle 4.55% (3/66) 3.55 0.00221 0.023517
GO:0035639 purine ribonucleoside triphosphate binding 15.15% (10/66) 1.52 0.00238 0.02364
GO:0034641 cellular nitrogen compound metabolic process 15.15% (10/66) 1.5 0.002562 0.023856
GO:0006766 vitamin metabolic process 3.03% (2/66) 4.82 0.002357 0.02395
GO:0032777 piccolo histone acetyltransferase complex 1.52% (1/66) 8.76 0.002304 0.02395
GO:0004349 glutamate 5-kinase activity 1.52% (1/66) 8.57 0.002633 0.024016
GO:0090150 establishment of protein localization to membrane 3.03% (2/66) 4.66 0.002907 0.025986
GO:0055029 nuclear DNA-directed RNA polymerase complex 3.03% (2/66) 4.64 0.003002 0.026314
GO:0004335 galactokinase activity 1.52% (1/66) 8.29 0.00318 0.026325
GO:0005975 carbohydrate metabolic process 7.58% (5/66) 2.34 0.003132 0.026413
GO:0140513 nuclear protein-containing complex 7.58% (5/66) 2.34 0.003099 0.026641
GO:0042721 TIM22 mitochondrial import inner membrane insertion complex 1.52% (1/66) 8.25 0.00329 0.026736
GO:0044271 cellular nitrogen compound biosynthetic process 7.58% (5/66) 2.32 0.003366 0.026867
GO:0015934 large ribosomal subunit 3.03% (2/66) 4.52 0.00351 0.027527
GO:0003676 nucleic acid binding 16.67% (11/66) 1.34 0.003662 0.027747
GO:0006007 glucose catabolic process 1.52% (1/66) 8.11 0.003618 0.027884
GO:0004619 phosphoglycerate mutase activity 1.52% (1/66) 7.9 0.004165 0.029553
GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity 1.52% (1/66) 7.9 0.004165 0.029553
GO:0006561 proline biosynthetic process 1.52% (1/66) 7.94 0.004056 0.02972
GO:0000428 DNA-directed RNA polymerase complex 3.03% (2/66) 4.43 0.004 0.0298
GO:0045039 protein insertion into mitochondrial inner membrane 1.52% (1/66) 7.63 0.00504 0.03265
GO:0071818 BAT3 complex 1.52% (1/66) 7.63 0.00504 0.03265
GO:0090304 nucleic acid metabolic process 12.12% (8/66) 1.6 0.004732 0.033053
GO:0044281 small molecule metabolic process 9.09% (6/66) 1.94 0.004836 0.033256
GO:0044262 obsolete cellular carbohydrate metabolic process 1.52% (1/66) 7.66 0.004931 0.033393
GO:0072657 protein localization to membrane 3.03% (2/66) 4.26 0.005038 0.033614
GO:0004350 glutamate-5-semialdehyde dehydrogenase activity 1.52% (1/66) 7.54 0.005368 0.034277
GO:0030880 RNA polymerase complex 3.03% (2/66) 4.16 0.005723 0.034571
GO:1901575 organic substance catabolic process 7.58% (5/66) 2.13 0.005705 0.034931
GO:0045703 ketoreductase activity 1.52% (1/66) 7.48 0.005586 0.035169
GO:0006749 glutathione metabolic process 3.03% (2/66) 4.17 0.00568 0.035263
GO:0019318 hexose metabolic process 3.03% (2/66) 4.13 0.005942 0.035415
GO:0017111 ribonucleoside triphosphate phosphatase activity 6.06% (4/66) 2.46 0.0062 0.035529
GO:0043529 GET complex 1.52% (1/66) 7.35 0.006132 0.035599
GO:0006605 protein targeting 3.03% (2/66) 4.12 0.006075 0.035731
GO:0072379 ER membrane insertion complex 1.52% (1/66) 7.25 0.006569 0.037168
GO:0009056 catabolic process 7.58% (5/66) 2.06 0.007004 0.039134
GO:0051787 misfolded protein binding 1.52% (1/66) 6.98 0.007877 0.042424
GO:0016462 pyrophosphatase activity 6.06% (4/66) 2.36 0.007822 0.04264
GO:0006560 proline metabolic process 1.52% (1/66) 7.0 0.007768 0.04287
GO:0006101 citrate metabolic process 1.52% (1/66) 6.85 0.00864 0.043888
GO:0003994 aconitate hydratase activity 1.52% (1/66) 6.83 0.008749 0.043941
GO:0006620 post-translational protein targeting to endoplasmic reticulum membrane 1.52% (1/66) 6.81 0.008858 0.043994
GO:0016817 hydrolase activity, acting on acid anhydrides 6.06% (4/66) 2.32 0.008566 0.04401
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.06% (4/66) 2.34 0.008292 0.044125
GO:0051716 cellular response to stimulus 6.06% (4/66) 2.28 0.009401 0.044235
GO:0030350 iron-responsive element binding 1.52% (1/66) 6.87 0.008531 0.044342
GO:0051668 localization within membrane 3.03% (2/66) 3.82 0.009031 0.044362
GO:0006950 response to stress 10.61% (7/66) 1.56 0.009358 0.044501
GO:0006357 regulation of transcription by RNA polymerase II 4.55% (3/66) 2.78 0.009768 0.044553
GO:0033554 cellular response to stress 6.06% (4/66) 2.32 0.008514 0.044772
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 1.52% (1/66) 6.68 0.009728 0.044831
GO:0009863 salicylic acid mediated signaling pathway 1.52% (1/66) 6.68 0.009728 0.044831
GO:0044391 ribosomal subunit 3.03% (2/66) 3.79 0.009354 0.044962
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 3.03% (2/66) 3.79 0.009314 0.045253
GO:0000987 cis-regulatory region sequence-specific DNA binding 3.03% (2/66) 3.7 0.010497 0.047397
GO:0003824 catalytic activity 30.3% (20/66) 0.74 0.010996 0.049154
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (66) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms