Coexpression cluster: Cluster_114 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0051253 negative regulation of RNA metabolic process 6.1% (5/82) 5.63 0.0 6e-06
GO:0003724 RNA helicase activity 6.1% (5/82) 5.65 0.0 7e-06
GO:0008186 ATP-dependent activity, acting on RNA 6.1% (5/82) 5.65 0.0 7e-06
GO:1902679 negative regulation of RNA biosynthetic process 6.1% (5/82) 5.84 0.0 7e-06
GO:0045892 negative regulation of DNA-templated transcription 6.1% (5/82) 5.84 0.0 7e-06
GO:0051172 negative regulation of nitrogen compound metabolic process 7.32% (6/82) 4.77 0.0 8e-06
GO:0008453 alanine-glyoxylate transaminase activity 3.66% (3/82) 7.9 0.0 1.6e-05
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 6.1% (5/82) 5.22 0.0 1.7e-05
GO:0047958 glycine:2-oxoglutarate aminotransferase activity 2.44% (2/82) 9.93 2e-06 6.2e-05
GO:0010556 regulation of macromolecule biosynthetic process 15.85% (13/82) 2.35 1e-06 6.2e-05
GO:0009889 regulation of biosynthetic process 15.85% (13/82) 2.33 2e-06 6.3e-05
GO:0010468 regulation of gene expression 15.85% (13/82) 2.36 1e-06 6.4e-05
GO:0031326 regulation of cellular biosynthetic process 15.85% (13/82) 2.33 2e-06 6.8e-05
GO:2001141 regulation of RNA biosynthetic process 13.41% (11/82) 2.52 3e-06 8.9e-05
GO:0006355 regulation of DNA-templated transcription 13.41% (11/82) 2.52 3e-06 8.9e-05
GO:0009853 photorespiration 2.44% (2/82) 9.59 3e-06 9.3e-05
GO:0051171 regulation of nitrogen compound metabolic process 14.63% (12/82) 2.34 4e-06 9.4e-05
GO:0060255 regulation of macromolecule metabolic process 15.85% (13/82) 2.22 4e-06 9.8e-05
GO:0080090 regulation of primary metabolic process 14.63% (12/82) 2.32 5e-06 9.9e-05
GO:0031323 regulation of cellular metabolic process 15.85% (13/82) 2.21 4e-06 9.9e-05
GO:0051252 regulation of RNA metabolic process 13.41% (11/82) 2.45 5e-06 0.000103
GO:0010558 negative regulation of macromolecule biosynthetic process 7.32% (6/82) 3.79 5e-06 0.000107
GO:0009890 negative regulation of biosynthetic process 7.32% (6/82) 3.74 7e-06 0.000108
GO:0019222 regulation of metabolic process 15.85% (13/82) 2.17 6e-06 0.000109
GO:0031327 negative regulation of cellular biosynthetic process 7.32% (6/82) 3.75 6e-06 0.00011
GO:0019219 regulation of nucleobase-containing compound metabolic process 13.41% (11/82) 2.39 8e-06 0.000127
GO:0010605 negative regulation of macromolecule metabolic process 7.32% (6/82) 3.62 1.1e-05 0.000164
GO:0009892 negative regulation of metabolic process 7.32% (6/82) 3.59 1.2e-05 0.000172
GO:0031324 negative regulation of cellular metabolic process 7.32% (6/82) 3.59 1.2e-05 0.000173
GO:0050794 regulation of cellular process 18.29% (15/82) 1.86 1.4e-05 0.00019
GO:0004386 helicase activity 6.1% (5/82) 3.99 1.8e-05 0.000241
GO:0050789 regulation of biological process 18.29% (15/82) 1.79 2.4e-05 0.000316
GO:0004021 L-alanine:2-oxoglutarate aminotransferase activity 2.44% (2/82) 7.69 4.5e-05 0.000554
GO:0047635 alanine-oxo-acid transaminase activity 2.44% (2/82) 7.69 4.5e-05 0.000554
GO:0048523 negative regulation of cellular process 7.32% (6/82) 3.21 5e-05 0.000597
GO:0048519 negative regulation of biological process 7.32% (6/82) 3.19 5.6e-05 0.000623
GO:0065007 biological regulation 18.29% (15/82) 1.69 5.5e-05 0.000632
GO:0016769 transferase activity, transferring nitrogenous groups 3.66% (3/82) 5.21 8.1e-05 0.000863
GO:0008483 transaminase activity 3.66% (3/82) 5.21 8.1e-05 0.000863
GO:0006357 regulation of transcription by RNA polymerase II 6.1% (5/82) 3.2 0.000228 0.002368
GO:0070461 SAGA-type complex 2.44% (2/82) 6.45 0.000254 0.002512
GO:0000124 SAGA complex 2.44% (2/82) 6.46 0.000248 0.002513
GO:0043094 cellular metabolic compound salvage 2.44% (2/82) 5.62 0.000788 0.007601
GO:0005575 cellular_component 35.37% (29/82) 0.82 0.000854 0.008056
GO:0005746 mitochondrial respirasome 1.22% (1/82) 9.84 0.001091 0.010063
GO:0003712 transcription coregulator activity 3.66% (3/82) 3.9 0.001116 0.010066
GO:0070469 respirasome 1.22% (1/82) 9.67 0.001227 0.010612
GO:1905368 peptidase complex 2.44% (2/82) 5.31 0.001215 0.010731
GO:0032422 purine-rich negative regulatory element binding 1.22% (1/82) 9.52 0.001364 0.011319
GO:0033565 ESCRT-0 complex 1.22% (1/82) 9.52 0.001364 0.011319
GO:0009507 chloroplast 4.88% (4/82) 3.01 0.001613 0.013128
GO:0009536 plastid 4.88% (4/82) 2.97 0.00178 0.013429
GO:0016743 carboxyl- or carbamoyltransferase activity 1.22% (1/82) 9.14 0.001772 0.013622
GO:0034080 CENP-A containing chromatin assembly 1.22% (1/82) 9.14 0.001772 0.013622
GO:0031055 chromatin remodeling at centromere 1.22% (1/82) 9.14 0.001772 0.013622
GO:0140110 transcription regulator activity 7.32% (6/82) 2.19 0.002082 0.015432
GO:0000123 histone acetyltransferase complex 2.44% (2/82) 4.88 0.00217 0.015798
GO:0043226 organelle 18.29% (15/82) 1.17 0.002439 0.017154
GO:0043229 intracellular organelle 18.29% (15/82) 1.17 0.002436 0.017433
GO:0004491 methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity 1.22% (1/82) 8.59 0.002589 0.017617
GO:0018478 malonate-semialdehyde dehydrogenase (acetylating) activity 1.22% (1/82) 8.59 0.002589 0.017617
GO:0005488 binding 36.59% (30/82) 0.7 0.002816 0.018552
GO:0140098 catalytic activity, acting on RNA 6.1% (5/82) 2.39 0.002775 0.018576
GO:0031248 protein acetyltransferase complex 2.44% (2/82) 4.65 0.002954 0.018861
GO:1902493 acetyltransferase complex 2.44% (2/82) 4.65 0.002954 0.018861
GO:0043130 ubiquitin binding 2.44% (2/82) 4.62 0.003115 0.019584
GO:0032182 ubiquitin-like protein binding 2.44% (2/82) 4.55 0.003415 0.020542
GO:0008535 respiratory chain complex IV assembly 1.22% (1/82) 8.14 0.003542 0.020702
GO:0033617 mitochondrial cytochrome c oxidase assembly 1.22% (1/82) 8.14 0.003542 0.020702
GO:0006210 thymine catabolic process 1.22% (1/82) 8.2 0.003406 0.020786
GO:0019859 thymine metabolic process 1.22% (1/82) 8.2 0.003406 0.020786
GO:0006520 amino acid metabolic process 4.88% (4/82) 2.66 0.003835 0.022107
GO:0043231 intracellular membrane-bounded organelle 15.85% (13/82) 1.18 0.004561 0.025239
GO:0006335 DNA replication-dependent chromatin assembly 1.22% (1/82) 7.75 0.004629 0.025278
GO:1901605 alpha-amino acid metabolic process 3.66% (3/82) 3.16 0.004781 0.025436
GO:0003674 molecular_function 50.0% (41/82) 0.5 0.004542 0.025471
GO:0043227 membrane-bounded organelle 15.85% (13/82) 1.17 0.004857 0.025512
GO:0016192 vesicle-mediated transport 4.88% (4/82) 2.57 0.004737 0.025528
GO:0006897 endocytosis 2.44% (2/82) 4.34 0.004516 0.025674
GO:1901606 alpha-amino acid catabolic process 2.44% (2/82) 4.24 0.005178 0.02686
GO:0030170 pyridoxal phosphate binding 2.44% (2/82) 4.13 0.006005 0.027087
GO:0070279 vitamin B6 binding 2.44% (2/82) 4.13 0.006005 0.027087
GO:0009063 amino acid catabolic process 2.44% (2/82) 4.14 0.005909 0.027245
GO:0019481 L-alanine catabolic process, by transamination 1.22% (1/82) 7.41 0.005851 0.027283
GO:0006208 pyrimidine nucleobase catabolic process 1.22% (1/82) 7.41 0.005851 0.027283
GO:0042851 L-alanine metabolic process 1.22% (1/82) 7.41 0.005851 0.027283
GO:0009080 pyruvate family amino acid catabolic process 1.22% (1/82) 7.41 0.005851 0.027283
GO:0009436 glyoxylate catabolic process 1.22% (1/82) 7.41 0.005851 0.027283
GO:0006524 alanine catabolic process 1.22% (1/82) 7.41 0.005851 0.027283
GO:0042853 L-alanine catabolic process 1.22% (1/82) 7.41 0.005851 0.027283
GO:0009078 pyruvate family amino acid metabolic process 1.22% (1/82) 7.41 0.005851 0.027283
GO:0006522 alanine metabolic process 1.22% (1/82) 7.41 0.005851 0.027283
GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity 1.22% (1/82) 7.25 0.006529 0.028825
GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity 1.22% (1/82) 7.25 0.006529 0.028825
GO:0008271 secondary active sulfate transmembrane transporter activity 1.22% (1/82) 7.2 0.0068 0.029094
GO:0072529 pyrimidine-containing compound catabolic process 1.22% (1/82) 7.2 0.0068 0.029094
GO:0010048 vernalization response 1.22% (1/82) 7.22 0.006665 0.029114
GO:0003676 nucleic acid binding 14.63% (12/82) 1.15 0.007248 0.030692
GO:0098657 import into cell 2.44% (2/82) 3.96 0.007487 0.031385
GO:0046487 glyoxylate metabolic process 1.22% (1/82) 7.03 0.007613 0.031595
GO:0015116 sulfate transmembrane transporter activity 1.22% (1/82) 6.98 0.007884 0.032077
GO:0008272 sulfate transport 1.22% (1/82) 6.98 0.007884 0.032077
GO:0018209 peptidyl-serine modification 2.44% (2/82) 3.9 0.008141 0.032484
GO:0018105 peptidyl-serine phosphorylation 2.44% (2/82) 3.9 0.008141 0.032484
GO:0005763 mitochondrial small ribosomal subunit 1.22% (1/82) 6.89 0.008426 0.032987
GO:0000314 organellar small ribosomal subunit 1.22% (1/82) 6.89 0.008426 0.032987
GO:0010494 cytoplasmic stress granule 1.22% (1/82) 6.82 0.008831 0.033936
GO:0046113 nucleobase catabolic process 1.22% (1/82) 6.82 0.008831 0.033936
GO:0019842 vitamin binding 2.44% (2/82) 3.81 0.009184 0.034966
GO:0008150 biological_process 40.24% (33/82) 0.53 0.010153 0.038306
GO:0016597 amino acid binding 1.22% (1/82) 6.59 0.010318 0.038578
GO:0008172 S-methyltransferase activity 1.22% (1/82) 6.55 0.010588 0.039234
GO:0072348 sulfur compound transport 1.22% (1/82) 6.52 0.010859 0.039529
GO:0032266 phosphatidylinositol-3-phosphate binding 1.22% (1/82) 6.52 0.010859 0.039529
GO:0034063 stress granule assembly 1.22% (1/82) 6.4 0.011803 0.042593
GO:0110165 cellular anatomical entity 28.05% (23/82) 0.67 0.013488 0.048254
GO:0016741 transferase activity, transferring one-carbon groups 3.66% (3/82) 2.59 0.013909 0.049336
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (82) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms