Coexpression cluster: Cluster_1244 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009055 electron transfer activity 30.56% (22/72) 8.19 0.0 0.0
GO:0022900 electron transport chain 25.0% (18/72) 7.8 0.0 0.0
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 15.28% (11/72) 10.03 0.0 0.0
GO:0009772 photosynthetic electron transport in photosystem II 13.89% (10/72) 10.62 0.0 0.0
GO:0019684 photosynthesis, light reaction 13.89% (10/72) 10.37 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 25.0% (18/72) 6.03 0.0 0.0
GO:0042651 thylakoid membrane 20.83% (15/72) 6.95 0.0 0.0
GO:0034357 photosynthetic membrane 20.83% (15/72) 6.95 0.0 0.0
GO:0009767 photosynthetic electron transport chain 15.28% (11/72) 8.91 0.0 0.0
GO:0009521 photosystem 15.28% (11/72) 8.04 0.0 0.0
GO:0009523 photosystem II 13.89% (10/72) 8.66 0.0 0.0
GO:0098796 membrane protein complex 25.0% (18/72) 5.16 0.0 0.0
GO:0044237 cellular metabolic process 55.56% (40/72) 2.24 0.0 0.0
GO:0009535 chloroplast thylakoid membrane 15.28% (11/72) 6.63 0.0 0.0
GO:0055035 plastid thylakoid membrane 15.28% (11/72) 6.63 0.0 0.0
GO:0016491 oxidoreductase activity 31.94% (23/72) 3.51 0.0 0.0
GO:0009987 cellular process 65.28% (47/72) 1.83 0.0 0.0
GO:0042170 plastid membrane 15.28% (11/72) 6.01 0.0 0.0
GO:0031968 organelle outer membrane 15.28% (11/72) 5.89 0.0 0.0
GO:0015453 oxidoreduction-driven active transmembrane transporter activity 9.72% (7/72) 8.48 0.0 0.0
GO:0019867 outer membrane 15.28% (11/72) 5.82 0.0 0.0
GO:0008152 metabolic process 58.33% (42/72) 1.86 0.0 0.0
GO:0008137 NADH dehydrogenase (ubiquinone) activity 8.33% (6/72) 9.0 0.0 0.0
GO:0050136 NADH dehydrogenase (quinone) activity 8.33% (6/72) 9.0 0.0 0.0
GO:0098588 bounding membrane of organelle 18.06% (13/72) 4.73 0.0 0.0
GO:0022904 respiratory electron transport chain 9.72% (7/72) 7.47 0.0 0.0
GO:0031090 organelle membrane 19.44% (14/72) 4.25 0.0 0.0
GO:0003955 NAD(P)H dehydrogenase (quinone) activity 8.33% (6/72) 8.34 0.0 0.0
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 8.33% (6/72) 8.0 0.0 0.0
GO:0015979 photosynthesis 9.72% (7/72) 7.0 0.0 0.0
GO:0016020 membrane 34.72% (25/72) 2.53 0.0 0.0
GO:0003954 NADH dehydrogenase activity 8.33% (6/72) 7.83 0.0 0.0
GO:0042773 ATP synthesis coupled electron transport 6.94% (5/72) 9.14 0.0 0.0
GO:0016651 oxidoreductase activity, acting on NAD(P)H 9.72% (7/72) 6.24 0.0 0.0
GO:0008150 biological_process 66.67% (48/72) 1.26 0.0 0.0
GO:0032991 protein-containing complex 27.78% (20/72) 2.58 0.0 0.0
GO:0003824 catalytic activity 51.39% (37/72) 1.51 0.0 0.0
GO:0015990 electron transport coupled proton transport 5.56% (4/72) 8.8 0.0 0.0
GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient 5.56% (4/72) 8.8 0.0 0.0
GO:0110165 cellular anatomical entity 50.0% (36/72) 1.5 0.0 0.0
GO:0009507 chloroplast 12.5% (9/72) 4.37 0.0 0.0
GO:0005575 cellular_component 52.78% (38/72) 1.4 0.0 0.0
GO:0009536 plastid 12.5% (9/72) 4.33 0.0 0.0
GO:1990351 transporter complex 6.94% (5/72) 6.58 0.0 0.0
GO:0003674 molecular_function 69.44% (50/72) 0.97 0.0 0.0
GO:0045271 respiratory chain complex I 5.56% (4/72) 7.46 0.0 0.0
GO:0030964 NADH dehydrogenase complex 5.56% (4/72) 7.38 0.0 0.0
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 6.94% (5/72) 5.76 0.0 0.0
GO:1902600 proton transmembrane transport 6.94% (5/72) 5.56 0.0 1e-06
GO:1902495 transmembrane transporter complex 5.56% (4/72) 6.59 0.0 1e-06
GO:0098803 respiratory chain complex 5.56% (4/72) 6.57 0.0 1e-06
GO:0097747 RNA polymerase activity 6.94% (5/72) 5.43 0.0 1e-06
GO:0034062 5'-3' RNA polymerase activity 6.94% (5/72) 5.43 0.0 1e-06
GO:0015399 primary active transmembrane transporter activity 9.72% (7/72) 4.04 0.0 2e-06
GO:0005747 mitochondrial respiratory chain complex I 4.17% (3/72) 7.35 1e-06 7e-06
GO:0044271 cellular nitrogen compound biosynthetic process 12.5% (9/72) 3.04 2e-06 1.1e-05
GO:0001882 nucleoside binding 4.17% (3/72) 7.07 2e-06 1.2e-05
GO:0032549 ribonucleoside binding 4.17% (3/72) 7.07 2e-06 1.2e-05
GO:1990204 oxidoreductase complex 5.56% (4/72) 5.37 3e-06 2e-05
GO:0034654 nucleobase-containing compound biosynthetic process 9.72% (7/72) 3.51 3e-06 2e-05
GO:0043226 organelle 26.39% (19/72) 1.69 3e-06 2.2e-05
GO:0043229 intracellular organelle 26.39% (19/72) 1.69 3e-06 2.2e-05
GO:0031224 obsolete intrinsic component of membrane 2.78% (2/72) 9.44 4e-06 2.4e-05
GO:0006351 DNA-templated transcription 6.94% (5/72) 4.43 4e-06 2.5e-05
GO:0016168 chlorophyll binding 2.78% (2/72) 9.38 4e-06 2.6e-05
GO:0022804 active transmembrane transporter activity 9.72% (7/72) 3.37 5e-06 3.3e-05
GO:0098655 monoatomic cation transmembrane transport 6.94% (5/72) 4.23 8e-06 4.7e-05
GO:0098662 inorganic cation transmembrane transport 6.94% (5/72) 4.17 1e-05 5.5e-05
GO:0034220 monoatomic ion transmembrane transport 6.94% (5/72) 4.16 1e-05 5.6e-05
GO:0044249 cellular biosynthetic process 15.28% (11/72) 2.34 1e-05 5.8e-05
GO:0098660 inorganic ion transmembrane transport 6.94% (5/72) 4.07 1.3e-05 7.4e-05
GO:0016779 nucleotidyltransferase activity 6.94% (5/72) 4.05 1.4e-05 7.8e-05
GO:0018130 heterocycle biosynthetic process 9.72% (7/72) 3.14 1.5e-05 8.2e-05
GO:0019438 aromatic compound biosynthetic process 9.72% (7/72) 3.07 2.1e-05 0.000112
GO:0032774 RNA biosynthetic process 6.94% (5/72) 3.91 2.2e-05 0.000115
GO:1901576 organic substance biosynthetic process 15.28% (11/72) 2.22 2.2e-05 0.000117
GO:0009058 biosynthetic process 15.28% (11/72) 2.15 3.6e-05 0.000182
GO:0009059 macromolecule biosynthetic process 9.72% (7/72) 2.94 3.7e-05 0.000185
GO:1901362 organic cyclic compound biosynthetic process 9.72% (7/72) 2.92 4e-05 0.000201
GO:0046906 tetrapyrrole binding 8.33% (6/72) 3.24 4.4e-05 0.000217
GO:0006812 monoatomic cation transport 6.94% (5/72) 3.65 5.2e-05 0.000254
GO:0016070 RNA metabolic process 12.5% (9/72) 2.36 6.2e-05 0.000299
GO:0098800 inner mitochondrial membrane protein complex 4.17% (3/72) 5.18 8.6e-05 0.000406
GO:0006811 monoatomic ion transport 6.94% (5/72) 3.46 9.9e-05 0.000462
GO:0034641 cellular nitrogen compound metabolic process 18.06% (13/72) 1.76 0.000105 0.000485
GO:0043231 intracellular membrane-bounded organelle 20.83% (15/72) 1.57 0.000121 0.000553
GO:0022857 transmembrane transporter activity 12.5% (9/72) 2.23 0.000125 0.000563
GO:0043227 membrane-bounded organelle 20.83% (15/72) 1.56 0.000132 0.000588
GO:0005215 transporter activity 12.5% (9/72) 2.16 0.000178 0.000786
GO:0006754 ATP biosynthetic process 2.78% (2/72) 6.63 0.000196 0.000847
GO:0015986 proton motive force-driven ATP synthesis 2.78% (2/72) 6.63 0.000196 0.000847
GO:0140098 catalytic activity, acting on RNA 8.33% (6/72) 2.84 0.000201 0.00086
GO:0048038 quinone binding 2.78% (2/72) 6.46 0.000248 0.001047
GO:0098798 mitochondrial protein-containing complex 4.17% (3/72) 4.52 0.000322 0.001348
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 2.78% (2/72) 6.18 0.000366 0.001499
GO:0009145 purine nucleoside triphosphate biosynthetic process 2.78% (2/72) 6.18 0.000366 0.001499
GO:0015078 proton transmembrane transporter activity 4.17% (3/72) 4.33 0.00048 0.001945
GO:0006139 nucleobase-containing compound metabolic process 15.28% (11/72) 1.7 0.000522 0.002095
GO:0005488 binding 40.28% (29/72) 0.84 0.000572 0.002271
GO:0140640 catalytic activity, acting on a nucleic acid 9.72% (7/72) 2.27 0.000634 0.002491
GO:0009060 aerobic respiration 2.78% (2/72) 5.55 0.000875 0.003405
GO:0045333 cellular respiration 2.78% (2/72) 5.5 0.000929 0.003545
GO:0046483 heterocycle metabolic process 15.28% (11/72) 1.6 0.000921 0.003547
GO:0009579 thylakoid 2.78% (2/72) 5.47 0.000969 0.003664
GO:0006725 cellular aromatic compound metabolic process 15.28% (11/72) 1.57 0.001109 0.00415
GO:0009201 ribonucleoside triphosphate biosynthetic process 2.78% (2/72) 5.31 0.001212 0.004492
GO:0009142 nucleoside triphosphate biosynthetic process 2.78% (2/72) 5.29 0.00124 0.004555
GO:0006810 transport 12.5% (9/72) 1.75 0.001371 0.004988
GO:1901360 organic cyclic compound metabolic process 15.28% (11/72) 1.53 0.001398 0.005041
GO:0051234 establishment of localization 12.5% (9/72) 1.69 0.001862 0.006652
GO:0015980 energy derivation by oxidation of organic compounds 2.78% (2/72) 4.93 0.002027 0.007175
GO:0006397 mRNA processing 4.17% (3/72) 3.55 0.002216 0.007776
GO:0090304 nucleic acid metabolic process 12.5% (9/72) 1.65 0.002271 0.007897
GO:0051179 localization 12.5% (9/72) 1.63 0.002385 0.008223
GO:0055085 transmembrane transport 8.33% (6/72) 2.04 0.003473 0.011867
GO:0048039 ubiquinone binding 1.39% (1/72) 8.07 0.003708 0.012561
GO:0020037 heme binding 5.56% (4/72) 2.67 0.003748 0.012588
GO:0048564 photosystem I assembly 1.39% (1/72) 7.74 0.004662 0.015528
GO:1901031 regulation of response to reactive oxygen species 1.39% (1/72) 7.6 0.005139 0.016831
GO:1902882 regulation of response to oxidative stress 1.39% (1/72) 7.6 0.005139 0.016831
GO:0009152 purine ribonucleotide biosynthetic process 2.78% (2/72) 4.22 0.005297 0.017203
GO:0097159 organic cyclic compound binding 26.39% (19/72) 0.88 0.005345 0.017216
GO:0044238 primary metabolic process 26.39% (19/72) 0.87 0.005488 0.017533
GO:0016675 oxidoreductase activity, acting on a heme group of donors 1.39% (1/72) 7.47 0.005616 0.017657
GO:0004129 cytochrome-c oxidase activity 1.39% (1/72) 7.47 0.005616 0.017657
GO:0055072 obsolete iron ion homeostasis 1.39% (1/72) 7.3 0.006331 0.019746
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen 1.39% (1/72) 7.12 0.007164 0.022168
GO:0005779 obsolete integral component of peroxisomal membrane 1.39% (1/72) 7.1 0.007283 0.02236
GO:0046034 ATP metabolic process 2.78% (2/72) 3.93 0.007792 0.023556
GO:0030042 actin filament depolymerization 1.39% (1/72) 7.0 0.007759 0.023637
GO:0022890 inorganic cation transmembrane transporter activity 4.17% (3/72) 2.86 0.008412 0.025237
GO:0016071 mRNA metabolic process 4.17% (3/72) 2.85 0.008525 0.025381
GO:0009205 purine ribonucleoside triphosphate metabolic process 2.78% (2/72) 3.85 0.008658 0.025394
GO:0006164 purine nucleotide biosynthetic process 2.78% (2/72) 3.85 0.008616 0.025458
GO:0009144 purine nucleoside triphosphate metabolic process 2.78% (2/72) 3.83 0.00886 0.025792
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 1.39% (1/72) 6.8 0.008947 0.025854
GO:0004822 isoleucine-tRNA ligase activity 1.39% (1/72) 6.65 0.009897 0.027981
GO:0006428 isoleucyl-tRNA aminoacylation 1.39% (1/72) 6.65 0.009897 0.027981
GO:0072522 purine-containing compound biosynthetic process 2.78% (2/72) 3.74 0.009974 0.027998
GO:0009260 ribonucleotide biosynthetic process 2.78% (2/72) 3.75 0.009852 0.028262
GO:0071704 organic substance metabolic process 26.39% (19/72) 0.79 0.010436 0.029088
GO:0046390 ribose phosphate biosynthetic process 2.78% (2/72) 3.7 0.01053 0.029142
GO:1990429 peroxisomal importomer complex 1.39% (1/72) 6.54 0.010727 0.02948
GO:0006807 nitrogen compound metabolic process 22.22% (16/72) 0.88 0.010888 0.029716
GO:0008324 monoatomic cation transmembrane transporter activity 4.17% (3/72) 2.72 0.010997 0.029805
GO:0009199 ribonucleoside triphosphate metabolic process 2.78% (2/72) 3.63 0.011583 0.030968
GO:0006513 protein monoubiquitination 1.39% (1/72) 6.43 0.011556 0.031107
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 1.39% (1/72) 6.37 0.01203 0.03173
GO:0005789 endoplasmic reticulum membrane 2.78% (2/72) 3.6 0.011994 0.031849
GO:0009141 nucleoside triphosphate metabolic process 2.78% (2/72) 3.59 0.01226 0.032122
GO:1901566 organonitrogen compound biosynthetic process 5.56% (4/72) 2.16 0.012541 0.03264
GO:0043228 non-membrane-bounded organelle 5.56% (4/72) 2.15 0.01279 0.032852
GO:0043232 intracellular non-membrane-bounded organelle 5.56% (4/72) 2.15 0.012784 0.033053
GO:0031902 late endosome membrane 1.39% (1/72) 6.14 0.014041 0.035831
GO:0006013 mannose metabolic process 1.39% (1/72) 6.13 0.014159 0.0359
GO:0009522 photosystem I 1.39% (1/72) 6.11 0.014395 0.036265
GO:0016558 protein import into peroxisome matrix 1.39% (1/72) 6.06 0.014868 0.036981
GO:0015318 inorganic molecular entity transmembrane transporter activity 4.17% (3/72) 2.55 0.014787 0.037014
GO:0012507 ER to Golgi transport vesicle membrane 1.39% (1/72) 6.02 0.01534 0.037678
GO:0030662 coated vesicle membrane 1.39% (1/72) 6.02 0.01534 0.037678
GO:0030658 transport vesicle membrane 1.39% (1/72) 5.97 0.015812 0.038596
GO:0015252 proton channel activity 1.39% (1/72) 5.93 0.016283 0.03902
GO:0004144 diacylglycerol O-acyltransferase activity 1.39% (1/72) 5.93 0.016283 0.03902
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 1.39% (1/72) 5.93 0.016283 0.03902
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 1.39% (1/72) 5.85 0.017226 0.041029
GO:0009165 nucleotide biosynthetic process 2.78% (2/72) 3.3 0.017876 0.042067
GO:1901293 nucleoside phosphate biosynthetic process 2.78% (2/72) 3.3 0.017876 0.042067
GO:0005506 iron ion binding 4.17% (3/72) 2.44 0.018173 0.042511
GO:0015075 monoatomic ion transmembrane transporter activity 4.17% (3/72) 2.43 0.018421 0.042836
GO:0072663 establishment of protein localization to peroxisome 1.39% (1/72) 5.71 0.018874 0.043124
GO:0072662 protein localization to peroxisome 1.39% (1/72) 5.71 0.018874 0.043124
GO:0003735 structural constituent of ribosome 2.78% (2/72) 3.26 0.018792 0.043443
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain 1.39% (1/72) 5.69 0.019226 0.043676
GO:0003677 DNA binding 8.33% (6/72) 1.5 0.019504 0.044052
GO:0008154 actin polymerization or depolymerization 1.39% (1/72) 5.63 0.020049 0.045024
GO:0017004 cytochrome complex assembly 1.39% (1/72) 5.54 0.02134 0.047382
GO:0016411 acylglycerol O-acyltransferase activity 1.39% (1/72) 5.54 0.02134 0.047382
GO:0043170 macromolecule metabolic process 19.44% (14/72) 0.84 0.022174 0.048957
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (72) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms