Coexpression cluster: Cluster_1421 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005575 cellular_component 46.03% (29/63) 1.2 3e-06 0.001071
GO:0030136 clathrin-coated vesicle 3.17% (2/63) 6.84 0.000146 0.005034
GO:0032050 clathrin heavy chain binding 3.17% (2/63) 6.85 0.000145 0.005471
GO:0005545 1-phosphatidylinositol binding 3.17% (2/63) 6.88 0.00014 0.005861
GO:0048268 clathrin coat assembly 3.17% (2/63) 6.88 0.00014 0.005861
GO:0110165 cellular anatomical entity 39.68% (25/63) 1.17 3.3e-05 0.006247
GO:0098590 plasma membrane region 3.17% (2/63) 6.54 0.000223 0.007027
GO:0043226 organelle 23.81% (15/63) 1.55 0.00013 0.00704
GO:0043229 intracellular organelle 23.81% (15/63) 1.55 0.00013 0.008204
GO:0005905 clathrin-coated pit 3.17% (2/63) 7.01 0.000117 0.008808
GO:0043227 membrane-bounded organelle 22.22% (14/63) 1.65 0.000105 0.009943
GO:0003676 nucleic acid binding 19.05% (12/63) 1.53 0.000739 0.01035
GO:0072583 clathrin-dependent endocytosis 3.17% (2/63) 6.2 0.000358 0.010406
GO:0050311 sulfite reductase (ferredoxin) activity 1.59% (1/63) 10.41 0.000734 0.010666
GO:0016002 sulfite reductase activity 1.59% (1/63) 10.41 0.000734 0.010666
GO:0009337 sulfite reductase complex (NADPH) 1.59% (1/63) 10.41 0.000734 0.010666
GO:0016673 oxidoreductase activity, acting on a sulfur group of donors, iron-sulfur protein as acceptor 1.59% (1/63) 10.41 0.000734 0.010666
GO:2001141 regulation of RNA biosynthetic process 11.11% (7/63) 2.25 0.000667 0.011457
GO:0006355 regulation of DNA-templated transcription 11.11% (7/63) 2.25 0.000667 0.011457
GO:0051252 regulation of RNA metabolic process 11.11% (7/63) 2.18 0.000893 0.012049
GO:0003677 DNA binding 12.7% (8/63) 2.11 0.000517 0.012216
GO:0030135 coated vesicle 3.17% (2/63) 5.88 0.00055 0.012239
GO:0043231 intracellular membrane-bounded organelle 22.22% (14/63) 1.66 9.7e-05 0.01224
GO:0030276 clathrin binding 3.17% (2/63) 5.76 0.000656 0.012403
GO:0005634 nucleus 14.29% (9/63) 1.95 0.000501 0.012614
GO:0006900 vesicle budding from membrane 3.17% (2/63) 6.0 0.000469 0.012668
GO:0003713 transcription coactivator activity 3.17% (2/63) 5.76 0.000649 0.01291
GO:0006898 receptor-mediated endocytosis 3.17% (2/63) 5.8 0.000616 0.012944
GO:0019219 regulation of nucleobase-containing compound metabolic process 11.11% (7/63) 2.12 0.001121 0.014612
GO:0005743 mitochondrial inner membrane 3.17% (2/63) 5.28 0.001259 0.015862
GO:0005488 binding 39.68% (25/63) 0.81 0.001706 0.020806
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding 3.17% (2/63) 4.97 0.00191 0.022559
GO:0019866 organelle inner membrane 3.17% (2/63) 4.94 0.001991 0.022803
GO:0022900 electron transport chain 3.17% (2/63) 4.83 0.002331 0.023185
GO:0051171 regulation of nitrogen compound metabolic process 11.11% (7/63) 1.94 0.002273 0.02322
GO:0080090 regulation of primary metabolic process 11.11% (7/63) 1.93 0.002396 0.023221
GO:0019877 diaminopimelate biosynthetic process 1.59% (1/63) 8.9 0.002095 0.023288
GO:0008289 lipid binding 4.76% (3/63) 3.54 0.002247 0.023598
GO:0008150 biological_process 44.44% (28/63) 0.68 0.003468 0.023838
GO:1902936 phosphatidylinositol bisphosphate binding 3.17% (2/63) 4.86 0.002237 0.024157
GO:0140647 P450-containing electron transport chain 1.59% (1/63) 8.18 0.003454 0.024178
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 1.59% (1/63) 8.18 0.003454 0.024178
GO:1901981 phosphatidylinositol phosphate binding 3.17% (2/63) 4.74 0.00261 0.024662
GO:0009889 regulation of biosynthetic process 11.11% (7/63) 1.81 0.003721 0.024675
GO:1902494 catalytic complex 7.94% (5/63) 2.27 0.003787 0.024681
GO:0140110 transcription regulator activity 7.94% (5/63) 2.31 0.003415 0.024826
GO:0006897 endocytosis 3.17% (2/63) 4.72 0.002696 0.024858
GO:0016050 vesicle organization 3.17% (2/63) 4.55 0.003372 0.024993
GO:0031326 regulation of cellular biosynthetic process 11.11% (7/63) 1.81 0.003706 0.025015
GO:0010556 regulation of macromolecule biosynthetic process 11.11% (7/63) 1.84 0.003363 0.025427
GO:0009584 detection of visible light 1.59% (1/63) 8.46 0.002827 0.025441
GO:0031966 mitochondrial membrane 3.17% (2/63) 4.56 0.003324 0.02564
GO:0009583 detection of light stimulus 1.59% (1/63) 8.41 0.002931 0.025769
GO:0000149 SNARE binding 3.17% (2/63) 4.64 0.003002 0.025792
GO:0051540 metal cluster binding 3.17% (2/63) 4.57 0.0033 0.025985
GO:0051536 iron-sulfur cluster binding 3.17% (2/63) 4.57 0.0033 0.025985
GO:0004663 Rab geranylgeranyltransferase activity 1.59% (1/63) 8.31 0.00314 0.02638
GO:0010468 regulation of gene expression 11.11% (7/63) 1.85 0.003241 0.026629
GO:0050794 regulation of cellular process 14.29% (9/63) 1.5 0.004204 0.026936
GO:0005751 mitochondrial respiratory chain complex IV 1.59% (1/63) 7.83 0.004394 0.027681
GO:0098657 import into cell 3.17% (2/63) 4.34 0.00449 0.027825
GO:0004551 dinucleotide phosphatase activity 1.59% (1/63) 7.7 0.004811 0.02798
GO:0035529 NADH pyrophosphatase activity 1.59% (1/63) 7.7 0.004811 0.02798
GO:0006875 obsolete intracellular metal ion homeostasis 1.59% (1/63) 7.73 0.004707 0.028242
GO:0035091 phosphatidylinositol binding 3.17% (2/63) 4.31 0.004658 0.028399
GO:0032807 DNA ligase IV complex 1.59% (1/63) 7.27 0.00648 0.029158
GO:0070419 nonhomologous end joining complex 1.59% (1/63) 7.27 0.00648 0.029158
GO:1990391 DNA repair complex 1.59% (1/63) 7.27 0.00648 0.029158
GO:0051103 DNA ligation involved in DNA repair 1.59% (1/63) 7.27 0.00648 0.029158
GO:0010494 cytoplasmic stress granule 1.59% (1/63) 7.2 0.006792 0.029853
GO:0019222 regulation of metabolic process 11.11% (7/63) 1.65 0.006719 0.029882
GO:0005968 Rab-protein geranylgeranyltransferase complex 1.59% (1/63) 7.55 0.005333 0.030087
GO:0004661 protein geranylgeranyltransferase activity 1.59% (1/63) 7.55 0.005333 0.030087
GO:0016559 peroxisome fission 1.59% (1/63) 7.29 0.006375 0.030123
GO:0009532 plastid stroma 3.17% (2/63) 4.09 0.006329 0.030285
GO:0009570 chloroplast stroma 3.17% (2/63) 4.09 0.006329 0.030285
GO:0060255 regulation of macromolecule metabolic process 11.11% (7/63) 1.71 0.005502 0.030582
GO:0031323 regulation of cellular metabolic process 11.11% (7/63) 1.7 0.005682 0.030682
GO:0050789 regulation of biological process 14.29% (9/63) 1.43 0.005779 0.030765
GO:0009725 response to hormone 3.17% (2/63) 4.1 0.006189 0.030783
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen 1.59% (1/63) 7.31 0.006271 0.030786
GO:0047631 ADP-ribose diphosphatase activity 1.59% (1/63) 7.46 0.005646 0.030929
GO:0009581 detection of external stimulus 1.59% (1/63) 7.34 0.006167 0.031081
GO:0051606 detection of stimulus 1.59% (1/63) 7.34 0.006167 0.031081
GO:0009582 detection of abiotic stimulus 1.59% (1/63) 7.34 0.006167 0.031081
GO:0045277 respiratory chain complex IV 1.59% (1/63) 7.36 0.006063 0.031829
GO:0018344 protein geranylgeranylation 1.59% (1/63) 7.05 0.007521 0.032676
GO:0051603 proteolysis involved in protein catabolic process 4.76% (3/63) 2.91 0.007609 0.032685
GO:0009719 response to endogenous stimulus 3.17% (2/63) 3.94 0.007715 0.032768
GO:0003674 molecular_function 50.79% (32/63) 0.52 0.008508 0.034956
GO:0032991 protein-containing complex 12.7% (8/63) 1.46 0.008423 0.034986
GO:0008318 protein prenyltransferase activity 1.59% (1/63) 6.9 0.008353 0.035082
GO:0034063 stress granule assembly 1.59% (1/63) 6.78 0.009081 0.036515
GO:0065007 biological regulation 14.29% (9/63) 1.33 0.009033 0.036716
GO:0005543 phospholipid binding 3.17% (2/63) 3.78 0.009536 0.037944
GO:0003910 DNA ligase (ATP) activity 1.59% (1/63) 6.55 0.010638 0.040617
GO:0003712 transcription coregulator activity 3.17% (2/63) 3.7 0.010552 0.040702
GO:0018342 protein prenylation 1.59% (1/63) 6.56 0.010534 0.04105
GO:0097354 prenylation 1.59% (1/63) 6.56 0.010534 0.04105
GO:0003909 DNA ligase activity 1.59% (1/63) 6.51 0.010949 0.041388
GO:0044877 protein-containing complex binding 4.76% (3/63) 2.7 0.011272 0.042188
GO:0070069 cytochrome complex 1.59% (1/63) 6.43 0.011571 0.042881
GO:0097602 cullin family protein binding 1.59% (1/63) 6.37 0.011986 0.043986
GO:0006996 organelle organization 6.35% (4/63) 2.17 0.01225 0.0441
GO:0006266 DNA ligation 1.59% (1/63) 6.35 0.012193 0.044316
GO:0035145 exon-exon junction complex 1.59% (1/63) 6.19 0.013642 0.048648
GO:0006297 nucleotide-excision repair, DNA gap filling 1.59% (1/63) 6.15 0.013952 0.048833
GO:0000103 sulfate assimilation 1.59% (1/63) 6.15 0.013952 0.048833
GO:0061024 membrane organization 3.17% (2/63) 3.47 0.014214 0.049294
GO:0022607 cellular component assembly 4.76% (3/63) 2.57 0.014443 0.049633
GO:0097159 organic cyclic compound binding 25.4% (16/63) 0.82 0.014613 0.049762
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (63) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms