Coexpression cluster: Cluster_2062 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009142 nucleoside triphosphate biosynthetic process 4.44% (6/135) 5.97 0.0 0.0
GO:0009201 ribonucleoside triphosphate biosynthetic process 4.44% (6/135) 5.99 0.0 1e-06
GO:0046390 ribose phosphate biosynthetic process 5.19% (7/135) 4.6 0.0 3e-06
GO:1901566 organonitrogen compound biosynthetic process 9.63% (13/135) 2.95 0.0 3e-06
GO:0009260 ribonucleotide biosynthetic process 5.19% (7/135) 4.65 0.0 4e-06
GO:0005575 cellular_component 40.0% (54/135) 1.0 0.0 1e-05
GO:0044271 cellular nitrogen compound biosynthetic process 9.63% (13/135) 2.66 0.0 1.1e-05
GO:0003883 CTP synthase activity 2.96% (4/135) 6.43 0.0 1.2e-05
GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process 2.96% (4/135) 6.24 0.0 1.3e-05
GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process 2.96% (4/135) 6.24 0.0 1.3e-05
GO:0006241 CTP biosynthetic process 2.96% (4/135) 6.24 0.0 1.3e-05
GO:0046036 CTP metabolic process 2.96% (4/135) 6.24 0.0 1.3e-05
GO:0009259 ribonucleotide metabolic process 5.93% (8/135) 3.77 0.0 1.3e-05
GO:0005198 structural molecule activity 5.93% (8/135) 3.63 0.0 1.3e-05
GO:0009147 pyrimidine nucleoside triphosphate metabolic process 2.96% (4/135) 6.2 0.0 1.3e-05
GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process 2.96% (4/135) 6.21 0.0 1.3e-05
GO:0009165 nucleotide biosynthetic process 5.19% (7/135) 4.2 0.0 1.4e-05
GO:1901293 nucleoside phosphate biosynthetic process 5.19% (7/135) 4.2 0.0 1.4e-05
GO:0019693 ribose phosphate metabolic process 5.93% (8/135) 3.71 0.0 1.4e-05
GO:0042802 identical protein binding 2.96% (4/135) 6.14 0.0 1.4e-05
GO:0003735 structural constituent of ribosome 5.19% (7/135) 4.16 0.0 1.4e-05
GO:0009199 ribonucleoside triphosphate metabolic process 4.44% (6/135) 4.31 1e-06 2.3e-05
GO:0009987 cellular process 36.3% (49/135) 0.98 1e-06 2.4e-05
GO:0019856 pyrimidine nucleobase biosynthetic process 2.96% (4/135) 5.91 1e-06 2.5e-05
GO:0034641 cellular nitrogen compound metabolic process 17.04% (23/135) 1.67 1e-06 2.5e-05
GO:0009141 nucleoside triphosphate metabolic process 4.44% (6/135) 4.27 1e-06 2.6e-05
GO:0015934 large ribosomal subunit 3.7% (5/135) 4.81 1e-06 3.3e-05
GO:0006206 pyrimidine nucleobase metabolic process 2.96% (4/135) 5.71 1e-06 3.4e-05
GO:0009117 nucleotide metabolic process 5.93% (8/135) 3.34 2e-06 4e-05
GO:0044237 cellular metabolic process 26.67% (36/135) 1.19 2e-06 4e-05
GO:0006753 nucleoside phosphate metabolic process 5.93% (8/135) 3.33 2e-06 4e-05
GO:1901564 organonitrogen compound metabolic process 21.48% (29/135) 1.37 2e-06 4.1e-05
GO:0009218 pyrimidine ribonucleotide metabolic process 2.96% (4/135) 5.57 2e-06 4.2e-05
GO:0009220 pyrimidine ribonucleotide biosynthetic process 2.96% (4/135) 5.57 2e-06 4.2e-05
GO:0090407 organophosphate biosynthetic process 5.93% (8/135) 3.28 2e-06 4.4e-05
GO:0046112 nucleobase biosynthetic process 2.96% (4/135) 5.52 2e-06 4.5e-05
GO:0006807 nitrogen compound metabolic process 26.67% (36/135) 1.14 3e-06 6.3e-05
GO:1901137 carbohydrate derivative biosynthetic process 5.19% (7/135) 3.5 3e-06 6.9e-05
GO:0006220 pyrimidine nucleotide metabolic process 2.96% (4/135) 5.32 4e-06 6.9e-05
GO:0006221 pyrimidine nucleotide biosynthetic process 2.96% (4/135) 5.32 4e-06 7e-05
GO:0055086 nucleobase-containing small molecule metabolic process 5.93% (8/135) 3.12 5e-06 8.9e-05
GO:0009112 nucleobase metabolic process 2.96% (4/135) 5.16 6e-06 0.000102
GO:0006412 translation 4.44% (6/135) 3.76 6e-06 0.000114
GO:0044238 primary metabolic process 28.89% (39/135) 1.01 1.1e-05 0.000172
GO:0072528 pyrimidine-containing compound biosynthetic process 2.96% (4/135) 4.95 1e-05 0.000172
GO:0003723 RNA binding 9.63% (13/135) 2.13 1e-05 0.000173
GO:0043043 peptide biosynthetic process 4.44% (6/135) 3.63 1.1e-05 0.000173
GO:0044391 ribosomal subunit 3.7% (5/135) 4.08 1.4e-05 0.000215
GO:0072527 pyrimidine-containing compound metabolic process 2.96% (4/135) 4.83 1.4e-05 0.000215
GO:0022625 cytosolic large ribosomal subunit 2.96% (4/135) 4.78 1.6e-05 0.000241
GO:0044281 small molecule metabolic process 9.63% (13/135) 2.02 2.3e-05 0.000334
GO:0008152 metabolic process 30.37% (41/135) 0.92 2.4e-05 0.00035
GO:0043603 amide metabolic process 5.19% (7/135) 3.04 2.7e-05 0.00038
GO:1901135 carbohydrate derivative metabolic process 5.93% (8/135) 2.76 2.8e-05 0.000391
GO:0006518 peptide metabolic process 4.44% (6/135) 3.38 2.8e-05 0.000397
GO:0002181 cytoplasmic translation 2.22% (3/135) 5.67 3.2e-05 0.00043
GO:0071704 organic substance metabolic process 28.89% (39/135) 0.92 4.3e-05 0.000571
GO:0110165 cellular anatomical entity 31.85% (43/135) 0.85 4.6e-05 0.000606
GO:0043604 amide biosynthetic process 4.44% (6/135) 3.24 4.8e-05 0.000613
GO:0044249 cellular biosynthetic process 10.37% (14/135) 1.78 6.3e-05 0.000796
GO:0006725 cellular aromatic compound metabolic process 14.07% (19/135) 1.45 6.8e-05 0.000846
GO:1901360 organic cyclic compound metabolic process 14.07% (19/135) 1.41 0.0001 0.001215
GO:0008150 biological_process 42.96% (58/135) 0.63 0.000114 0.001371
GO:0003729 mRNA binding 4.44% (6/135) 2.98 0.000128 0.001515
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 1.48% (2/135) 6.89 0.000138 0.0016
GO:1901576 organic substance biosynthetic process 10.37% (14/135) 1.66 0.000152 0.001736
GO:0019637 organophosphate metabolic process 5.93% (8/135) 2.38 0.000171 0.001935
GO:0034654 nucleobase-containing compound biosynthetic process 5.19% (7/135) 2.6 0.000179 0.001994
GO:1990904 ribonucleoprotein complex 5.19% (7/135) 2.59 0.000183 0.002003
GO:0016879 ligase activity, forming carbon-nitrogen bonds 2.96% (4/135) 3.82 0.000208 0.002244
GO:0006139 nucleobase-containing compound metabolic process 12.59% (17/135) 1.42 0.000213 0.00227
GO:0043226 organelle 17.78% (24/135) 1.12 0.000237 0.00245
GO:0043229 intracellular organelle 17.78% (24/135) 1.12 0.000236 0.00248
GO:0009058 biosynthetic process 10.37% (14/135) 1.59 0.000257 0.002623
GO:0016874 ligase activity 4.44% (6/135) 2.76 0.000289 0.002916
GO:0043228 non-membrane-bounded organelle 5.93% (8/135) 2.25 0.000322 0.003164
GO:0043232 intracellular non-membrane-bounded organelle 5.93% (8/135) 2.25 0.000322 0.003203
GO:0005840 ribosome 2.96% (4/135) 3.58 0.000385 0.003683
GO:0006796 phosphate-containing compound metabolic process 11.85% (16/135) 1.4 0.000383 0.003711
GO:0006793 phosphorus metabolic process 11.85% (16/135) 1.39 0.000408 0.003853
GO:0003674 molecular_function 49.63% (67/135) 0.49 0.000462 0.004312
GO:0046483 heterocycle metabolic process 12.59% (17/135) 1.32 0.00047 0.004329
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 1.48% (2/135) 5.94 0.000512 0.004664
GO:0032991 protein-containing complex 11.85% (16/135) 1.36 0.000544 0.004895
GO:0015986 proton motive force-driven ATP synthesis 1.48% (2/135) 5.73 0.000686 0.006028
GO:0006754 ATP biosynthetic process 1.48% (2/135) 5.73 0.000686 0.006028
GO:0018130 heterocycle biosynthetic process 5.19% (7/135) 2.24 0.000789 0.006854
GO:0005488 binding 34.81% (47/135) 0.63 0.0008 0.006874
GO:0019438 aromatic compound biosynthetic process 5.19% (7/135) 2.17 0.001054 0.008951
GO:0006417 regulation of translation 2.22% (3/135) 3.89 0.001166 0.009689
GO:0034248 regulation of amide metabolic process 2.22% (3/135) 3.89 0.001166 0.009689
GO:0009145 purine nucleoside triphosphate biosynthetic process 1.48% (2/135) 5.27 0.001276 0.01037
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 1.48% (2/135) 5.27 0.001276 0.01037
GO:0097159 organic cyclic compound binding 24.44% (33/135) 0.77 0.001302 0.01047
GO:0043170 macromolecule metabolic process 20.0% (27/135) 0.88 0.001333 0.010612
GO:0016604 nuclear body 1.48% (2/135) 5.13 0.001563 0.012308
GO:1901362 organic cyclic compound biosynthetic process 5.19% (7/135) 2.02 0.00189 0.014733
GO:0052648 ribitol phosphate metabolic process 0.74% (1/135) 8.66 0.002468 0.018476
GO:0046444 FMN metabolic process 0.74% (1/135) 8.66 0.002468 0.018476
GO:0052647 pentitol phosphate metabolic process 0.74% (1/135) 8.66 0.002468 0.018476
GO:0009398 FMN biosynthetic process 0.74% (1/135) 8.66 0.002468 0.018476
GO:0034660 ncRNA metabolic process 4.44% (6/135) 2.15 0.002558 0.018959
GO:0019538 protein metabolic process 13.33% (18/135) 1.04 0.002927 0.021481
GO:0000049 tRNA binding 1.48% (2/135) 4.56 0.003377 0.023212
GO:0048528 post-embryonic root development 0.74% (1/135) 8.21 0.003365 0.023335
GO:0001561 fatty acid alpha-oxidation 0.74% (1/135) 8.21 0.003365 0.023335
GO:0048527 lateral root development 0.74% (1/135) 8.21 0.003365 0.023335
GO:0090696 post-embryonic plant organ development 0.74% (1/135) 8.21 0.003365 0.023335
GO:0005759 mitochondrial matrix 1.48% (2/135) 4.54 0.003482 0.023719
GO:0005829 cytosol 5.19% (7/135) 1.87 0.003307 0.024037
GO:0003676 nucleic acid binding 13.33% (18/135) 1.02 0.003343 0.024068
GO:0006473 protein acetylation 1.48% (2/135) 4.46 0.003862 0.026071
GO:0004108 citrate (Si)-synthase activity 0.74% (1/135) 7.95 0.004036 0.026766
GO:0036440 citrate synthase activity 0.74% (1/135) 7.95 0.004036 0.026766
GO:0004496 mevalonate kinase activity 0.74% (1/135) 7.87 0.00426 0.028004
GO:0005654 nucleoplasm 1.48% (2/135) 4.37 0.004358 0.028404
GO:0008531 riboflavin kinase activity 0.74% (1/135) 7.8 0.004484 0.028725
GO:0005737 cytoplasm 8.15% (11/135) 1.34 0.004475 0.028918
GO:0009931 calcium-dependent protein serine/threonine kinase activity 1.48% (2/135) 4.32 0.004677 0.029467
GO:0010857 calcium-dependent protein kinase activity 1.48% (2/135) 4.32 0.004677 0.029467
GO:0004683 calmodulin-dependent protein kinase activity 1.48% (2/135) 4.3 0.004759 0.029732
GO:0008465 glycerate dehydrogenase activity 0.74% (1/135) 7.66 0.004931 0.030555
GO:0015228 coenzyme A transmembrane transporter activity 0.74% (1/135) 7.26 0.006495 0.036917
GO:0071106 adenosine 3',5'-bisphosphate transmembrane transport 0.74% (1/135) 7.26 0.006495 0.036917
GO:1990559 mitochondrial coenzyme A transmembrane transport 0.74% (1/135) 7.26 0.006495 0.036917
GO:0015880 coenzyme A transport 0.74% (1/135) 7.26 0.006495 0.036917
GO:0071077 adenosine 3',5'-bisphosphate transmembrane transporter activity 0.74% (1/135) 7.26 0.006495 0.036917
GO:0035349 coenzyme A transmembrane transport 0.74% (1/135) 7.26 0.006495 0.036917
GO:0043233 organelle lumen 1.48% (2/135) 4.11 0.006195 0.037468
GO:0070013 intracellular organelle lumen 1.48% (2/135) 4.11 0.006195 0.037468
GO:0031974 membrane-enclosed lumen 1.48% (2/135) 4.11 0.006195 0.037468
GO:0035556 intracellular signal transduction 2.96% (4/135) 2.46 0.00633 0.037979
GO:0000118 histone deacetylase complex 1.48% (2/135) 4.08 0.006404 0.038124
GO:0048039 ubiquinone binding 0.74% (1/135) 7.17 0.006941 0.039159
GO:0009059 macromolecule biosynthetic process 4.44% (6/135) 1.82 0.007647 0.042197
GO:0010608 post-transcriptional regulation of gene expression 2.22% (3/135) 2.92 0.007537 0.042204
GO:0031053 primary miRNA processing 0.74% (1/135) 7.03 0.00761 0.042303
GO:0022890 inorganic cation transmembrane transporter activity 2.96% (4/135) 2.37 0.007935 0.043468
GO:0034399 nuclear periphery 0.74% (1/135) 6.87 0.008502 0.045909
GO:0097255 R2TP complex 0.74% (1/135) 6.87 0.008502 0.045909
GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway 0.74% (1/135) 6.76 0.00917 0.048819
GO:0046777 protein autophosphorylation 1.48% (2/135) 3.81 0.009134 0.048974
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (135) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms