Coexpression cluster: Cluster_1354 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0051603 proteolysis involved in protein catabolic process 11.84% (9/76) 4.22 0.0 0.0
GO:0005575 cellular_component 51.32% (39/76) 1.36 0.0 1e-06
GO:0010498 proteasomal protein catabolic process 9.21% (7/76) 4.82 0.0 1e-06
GO:0030163 protein catabolic process 9.21% (7/76) 4.7 0.0 1e-06
GO:0008150 biological_process 59.21% (45/76) 1.09 0.0 1e-06
GO:0006511 ubiquitin-dependent protein catabolic process 9.21% (7/76) 4.34 0.0 6e-06
GO:0019941 modification-dependent protein catabolic process 9.21% (7/76) 4.2 0.0 8e-06
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 7.89% (6/76) 4.74 0.0 9e-06
GO:0043632 modification-dependent macromolecule catabolic process 9.21% (7/76) 4.14 0.0 1e-05
GO:0009057 macromolecule catabolic process 10.53% (8/76) 3.54 0.0 2.6e-05
GO:0110165 cellular anatomical entity 42.11% (32/76) 1.25 1e-06 2.9e-05
GO:0006508 proteolysis 11.84% (9/76) 3.06 1e-06 5.7e-05
GO:0007165 signal transduction 11.84% (9/76) 3.05 1e-06 5.7e-05
GO:0019538 protein metabolic process 23.68% (18/76) 1.87 1e-06 6e-05
GO:1901565 organonitrogen compound catabolic process 9.21% (7/76) 3.58 2e-06 7.7e-05
GO:1901575 organic substance catabolic process 11.84% (9/76) 2.78 7e-06 0.000226
GO:0032991 protein-containing complex 18.42% (14/76) 1.99 9e-06 0.000278
GO:1901564 organonitrogen compound metabolic process 25.0% (19/76) 1.59 1e-05 0.000279
GO:0009056 catabolic process 11.84% (9/76) 2.71 1e-05 0.000282
GO:0050789 regulation of biological process 19.74% (15/76) 1.9 9e-06 0.000294
GO:0065007 biological regulation 19.74% (15/76) 1.8 2.2e-05 0.000547
GO:0050794 regulation of cellular process 18.42% (14/76) 1.87 2.4e-05 0.000586
GO:0005737 cytoplasm 14.47% (11/76) 2.17 3.2e-05 0.000744
GO:0140535 intracellular protein-containing complex 7.89% (6/76) 3.14 6.6e-05 0.001462
GO:0044238 primary metabolic process 31.58% (24/76) 1.13 0.00011 0.002346
GO:0043170 macromolecule metabolic process 26.32% (20/76) 1.27 0.000137 0.002815
GO:0051179 localization 14.47% (11/76) 1.85 0.000229 0.004071
GO:0008152 metabolic process 32.89% (25/76) 1.04 0.000223 0.004105
GO:0051643 endoplasmic reticulum localization 2.63% (2/76) 6.56 0.000218 0.004158
GO:0061817 endoplasmic reticulum-plasma membrane tethering 2.63% (2/76) 6.56 0.000218 0.004158
GO:0005488 binding 40.79% (31/76) 0.85 0.000289 0.004811
GO:0071704 organic substance metabolic process 31.58% (24/76) 1.05 0.000282 0.004846
GO:0009987 cellular process 35.53% (27/76) 0.95 0.000313 0.00505
GO:0036033 mediator complex binding 1.32% (1/76) 10.95 0.000506 0.007929
GO:0006807 nitrogen compound metabolic process 26.32% (20/76) 1.12 0.000539 0.00821
GO:0071261 Ssh1 translocon complex 1.32% (1/76) 10.63 0.000632 0.00936
GO:0003674 molecular_function 53.95% (41/76) 0.61 0.000697 0.010045
GO:0043231 intracellular membrane-bounded organelle 18.42% (14/76) 1.39 0.000755 0.010323
GO:0005789 endoplasmic reticulum membrane 3.95% (3/76) 4.11 0.000739 0.010362
GO:0043227 membrane-bounded organelle 18.42% (14/76) 1.38 0.000813 0.010566
GO:0090158 endoplasmic reticulum membrane organization 2.63% (2/76) 5.6 0.000809 0.010784
GO:0019005 SCF ubiquitin ligase complex 2.63% (2/76) 5.57 0.000854 0.01084
GO:0003729 mRNA binding 5.26% (4/76) 3.22 0.000932 0.011551
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 2.63% (2/76) 5.42 0.001045 0.012665
GO:0060255 regulation of macromolecule metabolic process 11.84% (9/76) 1.8 0.001107 0.013116
GO:0000151 ubiquitin ligase complex 3.95% (3/76) 3.89 0.001156 0.013394
GO:0022406 membrane docking 2.63% (2/76) 5.18 0.001445 0.015097
GO:0140056 organelle localization by membrane tethering 2.63% (2/76) 5.18 0.001445 0.015097
GO:0051996 squalene synthase activity 1.32% (1/76) 9.49 0.00139 0.015438
GO:0004310 farnesyl-diphosphate farnesyltransferase activity 1.32% (1/76) 9.49 0.00139 0.015438
GO:0008430 selenium binding 1.32% (1/76) 9.36 0.001517 0.015545
GO:0019222 regulation of metabolic process 11.84% (9/76) 1.75 0.001436 0.015622
GO:0051171 regulation of nitrogen compound metabolic process 10.53% (8/76) 1.86 0.001608 0.015871
GO:1902494 catalytic complex 7.89% (6/76) 2.27 0.001594 0.016035
GO:0080090 regulation of primary metabolic process 10.53% (8/76) 1.85 0.001706 0.01653
GO:0005634 nucleus 11.84% (9/76) 1.68 0.001962 0.018675
GO:0006810 transport 11.84% (9/76) 1.67 0.00201 0.018798
GO:0010183 pollen tube guidance 1.32% (1/76) 8.78 0.002274 0.020544
GO:0050918 positive chemotaxis 1.32% (1/76) 8.78 0.002274 0.020544
GO:0006935 chemotaxis 1.32% (1/76) 8.7 0.0024 0.020634
GO:0042330 taxis 1.32% (1/76) 8.7 0.0024 0.020634
GO:0019899 enzyme binding 3.95% (3/76) 3.52 0.00236 0.020961
GO:0004674 protein serine/threonine kinase activity 6.58% (5/76) 2.41 0.002601 0.022007
GO:0051234 establishment of localization 11.84% (9/76) 1.61 0.002714 0.022606
GO:0040011 locomotion 1.32% (1/76) 8.43 0.002905 0.02382
GO:0010033 response to organic substance 3.95% (3/76) 3.38 0.003139 0.0239
GO:0043226 organelle 18.42% (14/76) 1.18 0.00313 0.024179
GO:0045892 negative regulation of DNA-templated transcription 2.63% (2/76) 4.63 0.003063 0.024369
GO:1902679 negative regulation of RNA biosynthetic process 2.63% (2/76) 4.63 0.003063 0.024369
GO:0043229 intracellular organelle 18.42% (14/76) 1.18 0.003127 0.024512
GO:0140096 catalytic activity, acting on a protein 14.47% (11/76) 1.36 0.003511 0.026355
GO:0004484 mRNA guanylyltransferase activity 1.32% (1/76) 7.99 0.003913 0.028186
GO:0030001 metal ion transport 3.95% (3/76) 3.27 0.003878 0.028312
GO:0051253 negative regulation of RNA metabolic process 2.63% (2/76) 4.42 0.004052 0.02842
GO:0010243 response to organonitrogen compound 2.63% (2/76) 4.46 0.003842 0.028442
GO:0046873 metal ion transmembrane transporter activity 3.95% (3/76) 3.24 0.00405 0.028785
GO:0140647 P450-containing electron transport chain 1.32% (1/76) 7.9 0.004165 0.028832
GO:0036211 protein modification process 13.16% (10/76) 1.41 0.00432 0.029521
GO:0097159 organic cyclic compound binding 26.32% (20/76) 0.87 0.004487 0.029895
GO:0031323 regulation of cellular metabolic process 10.53% (8/76) 1.62 0.004475 0.030193
GO:0034515 proteasome storage granule 1.32% (1/76) 7.66 0.004921 0.032379
GO:1901698 response to nitrogen compound 2.63% (2/76) 4.26 0.005016 0.032603
GO:0071256 translocon complex 1.32% (1/76) 7.49 0.00555 0.0348
GO:1990380 K48-linked deubiquitinase activity 1.32% (1/76) 7.49 0.00555 0.0348
GO:0016020 membrane 14.47% (11/76) 1.27 0.005685 0.03483
GO:0030619 U1 snRNA binding 1.32% (1/76) 7.46 0.005676 0.035175
GO:0140534 endoplasmic reticulum protein-containing complex 2.63% (2/76) 4.19 0.005521 0.035454
GO:0042995 cell projection 1.32% (1/76) 7.39 0.005927 0.035899
GO:1901642 nucleoside transmembrane transport 1.32% (1/76) 7.28 0.00643 0.037251
GO:0015858 nucleoside transport 1.32% (1/76) 7.28 0.00643 0.037251
GO:0042221 response to chemical 3.95% (3/76) 3.01 0.006311 0.037376
GO:1901700 response to oxygen-containing compound 2.63% (2/76) 4.06 0.006545 0.037509
GO:0031204 post-translational protein targeting to membrane, translocation 1.32% (1/76) 7.31 0.006304 0.037755
GO:0035639 purine ribonucleoside triphosphate binding 13.16% (10/76) 1.31 0.006684 0.037898
GO:0015079 potassium ion transmembrane transporter activity 2.63% (2/76) 3.99 0.007169 0.038213
GO:0008192 RNA guanylyltransferase activity 1.32% (1/76) 7.14 0.007058 0.038387
GO:0006793 phosphorus metabolic process 11.84% (9/76) 1.39 0.007147 0.038479
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 2.63% (2/76) 4.01 0.007031 0.038636
GO:0051247 positive regulation of protein metabolic process 2.63% (2/76) 4.02 0.006963 0.038658
GO:0006796 phosphate-containing compound metabolic process 11.84% (9/76) 1.4 0.006893 0.038672
GO:0031461 cullin-RING ubiquitin ligase complex 2.63% (2/76) 3.95 0.007562 0.039517
GO:0006813 potassium ion transport 2.63% (2/76) 3.95 0.007548 0.039833
GO:0010468 regulation of gene expression 9.21% (7/76) 1.58 0.009076 0.042434
GO:0006431 methionyl-tRNA aminoacylation 1.32% (1/76) 6.8 0.00894 0.042546
GO:0019773 proteasome core complex, alpha-subunit complex 1.32% (1/76) 6.8 0.00894 0.042546
GO:0034663 endoplasmic reticulum chaperone complex 1.32% (1/76) 6.8 0.00894 0.042546
GO:0004825 methionine-tRNA ligase activity 1.32% (1/76) 6.8 0.00894 0.042546
GO:0009368 endopeptidase Clp complex 1.32% (1/76) 6.78 0.009066 0.042761
GO:0045338 farnesyl diphosphate metabolic process 1.32% (1/76) 6.74 0.009316 0.042807
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity 1.32% (1/76) 6.74 0.009316 0.042807
GO:0010556 regulation of macromolecule biosynthetic process 9.21% (7/76) 1.57 0.009398 0.042814
GO:0004311 farnesyltranstransferase activity 1.32% (1/76) 6.9 0.008313 0.043019
GO:0009894 regulation of catabolic process 2.63% (2/76) 3.77 0.009621 0.043459
GO:0022890 inorganic cation transmembrane transporter activity 3.95% (3/76) 2.78 0.00975 0.04367
GO:0009893 positive regulation of metabolic process 3.95% (3/76) 2.83 0.008877 0.043809
GO:0051173 positive regulation of nitrogen compound metabolic process 3.95% (3/76) 2.85 0.00855 0.043817
GO:0006812 monoatomic cation transport 3.95% (3/76) 2.84 0.008727 0.04388
GO:0008360 regulation of cell shape 1.32% (1/76) 6.84 0.00869 0.04411
GO:0010604 positive regulation of macromolecule metabolic process 3.95% (3/76) 2.83 0.008863 0.044147
GO:0005788 endoplasmic reticulum lumen 1.32% (1/76) 6.63 0.010068 0.044718
GO:0009889 regulation of biosynthetic process 9.21% (7/76) 1.54 0.010332 0.044771
GO:0006370 7-methylguanosine mRNA capping 1.32% (1/76) 6.57 0.010443 0.04489
GO:0043412 macromolecule modification 13.16% (10/76) 1.22 0.0102 0.044932
GO:0031326 regulation of cellular biosynthetic process 9.21% (7/76) 1.54 0.010293 0.044969
GO:0015931 nucleobase-containing compound transport 2.63% (2/76) 3.68 0.010809 0.045724
GO:0071705 nitrogen compound transport 5.26% (4/76) 2.23 0.010804 0.046067
GO:0051252 regulation of RNA metabolic process 7.89% (6/76) 1.68 0.011081 0.046143
GO:0009719 response to endogenous stimulus 2.63% (2/76) 3.67 0.011061 0.04642
GO:0051640 organelle localization 2.63% (2/76) 3.62 0.011744 0.047784
GO:0009739 response to gibberellin 1.32% (1/76) 6.41 0.011695 0.047947
GO:0008324 monoatomic cation transmembrane transporter activity 3.95% (3/76) 2.64 0.012723 0.048096
GO:0030258 lipid modification 2.63% (2/76) 3.63 0.011641 0.048096
GO:0008138 protein tyrosine/serine/threonine phosphatase activity 1.32% (1/76) 6.28 0.012819 0.048116
GO:0043200 response to amino acid 1.32% (1/76) 6.26 0.012944 0.048245
GO:0071229 cellular response to acid chemical 1.32% (1/76) 6.29 0.012694 0.048328
GO:0071417 cellular response to organonitrogen compound 1.32% (1/76) 6.29 0.012694 0.048328
GO:0030307 positive regulation of cell growth 1.32% (1/76) 6.29 0.012694 0.048328
GO:0071230 cellular response to amino acid stimulus 1.32% (1/76) 6.29 0.012694 0.048328
GO:0009452 7-methylguanosine RNA capping 1.32% (1/76) 6.29 0.012694 0.048328
GO:0071902 positive regulation of protein serine/threonine kinase activity 1.32% (1/76) 6.29 0.012694 0.048328
GO:0009723 response to ethylene 1.32% (1/76) 6.35 0.012194 0.048869
GO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity 1.32% (1/76) 6.35 0.012194 0.048869
GO:0048518 positive regulation of biological process 3.95% (3/76) 2.61 0.013308 0.048918
GO:0019219 regulation of nucleobase-containing compound metabolic process 7.89% (6/76) 1.63 0.013246 0.04903
GO:0070628 proteasome binding 1.32% (1/76) 6.19 0.013568 0.049533
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (76) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms