Coexpression cluster: Cluster_837 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0060962 regulation of ribosomal protein gene transcription by RNA polymerase II 2.7% (2/74) 10.18 1e-06 0.000609
GO:1903189 glyoxal metabolic process 2.7% (2/74) 7.92 3.3e-05 0.004914
GO:0018193 peptidyl-amino acid modification 6.76% (5/74) 3.83 3e-05 0.00663
GO:0018195 peptidyl-arginine modification 2.7% (2/74) 6.9 0.000136 0.012173
GO:0018205 peptidyl-lysine modification 4.05% (3/74) 4.71 0.000219 0.012279
GO:0016274 protein-arginine N-methyltransferase activity 2.7% (2/74) 6.56 0.000217 0.01389
GO:0016273 arginine N-methyltransferase activity 2.7% (2/74) 6.56 0.000217 0.01389
GO:0018216 peptidyl-arginine methylation 2.7% (2/74) 6.91 0.000134 0.014994
GO:0034212 peptide N-acetyltransferase activity 2.7% (2/74) 5.77 0.000647 0.015245
GO:0005737 cytoplasm 12.16% (9/74) 1.92 0.000623 0.015508
GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity 1.35% (1/74) 10.67 0.000616 0.016222
GO:0005575 cellular_component 36.49% (27/74) 0.87 0.000734 0.016436
GO:0008641 ubiquitin-like modifier activating enzyme activity 2.7% (2/74) 5.83 0.000596 0.016688
GO:0018393 internal peptidyl-lysine acetylation 2.7% (2/74) 5.85 0.000576 0.017189
GO:0016573 histone acetylation 2.7% (2/74) 5.85 0.000576 0.017189
GO:0006475 internal protein amino acid acetylation 2.7% (2/74) 5.85 0.000576 0.017189
GO:0018394 peptidyl-lysine acetylation 2.7% (2/74) 5.85 0.000576 0.017189
GO:0003729 mRNA binding 5.41% (4/74) 3.26 0.000843 0.017988
GO:0005488 binding 39.19% (29/74) 0.8 0.000965 0.019652
GO:0009056 catabolic process 9.46% (7/74) 2.38 0.0004 0.019924
GO:0006473 protein acetylation 2.7% (2/74) 5.33 0.001185 0.023084
GO:0061733 peptide-lysine-N-acetyltransferase activity 2.7% (2/74) 5.86 0.000567 0.023111
GO:0004402 histone acetyltransferase activity 2.7% (2/74) 5.91 0.000532 0.023822
GO:1902680 positive regulation of RNA biosynthetic process 4.05% (3/74) 3.69 0.001689 0.026099
GO:0045893 positive regulation of DNA-templated transcription 4.05% (3/74) 3.69 0.001689 0.026099
GO:0010498 proteasomal protein catabolic process 4.05% (3/74) 3.64 0.001884 0.02638
GO:0006357 regulation of transcription by RNA polymerase II 5.41% (4/74) 3.03 0.001535 0.026444
GO:0000703 oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity 1.35% (1/74) 9.4 0.001477 0.026463
GO:0016410 N-acyltransferase activity 2.7% (2/74) 4.93 0.002026 0.026689
GO:0060628 regulation of ER to Golgi vesicle-mediated transport 1.35% (1/74) 8.9 0.002091 0.02677
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 4.05% (3/74) 3.77 0.001438 0.026838
GO:0008080 N-acetyltransferase activity 2.7% (2/74) 5.1 0.001622 0.026908
GO:0006914 autophagy 2.7% (2/74) 4.99 0.001872 0.02705
GO:0061919 process utilizing autophagic mechanism 2.7% (2/74) 4.99 0.001872 0.02705
GO:0006081 cellular aldehyde metabolic process 2.7% (2/74) 4.93 0.002018 0.027397
GO:0008152 metabolic process 29.73% (22/74) 0.89 0.002302 0.028651
GO:0030163 protein catabolic process 4.05% (3/74) 3.51 0.002399 0.029049
GO:0043543 protein acylation 2.7% (2/74) 4.64 0.003006 0.030602
GO:0034657 GID complex 1.35% (1/74) 8.34 0.003074 0.030604
GO:1901565 organonitrogen compound catabolic process 5.41% (4/74) 2.81 0.002612 0.030793
GO:0010484 histone H3 acetyltransferase activity 1.35% (1/74) 8.23 0.00332 0.030983
GO:0010557 positive regulation of macromolecule biosynthetic process 4.05% (3/74) 3.4 0.002993 0.031188
GO:0009891 positive regulation of biosynthetic process 4.05% (3/74) 3.4 0.002993 0.031188
GO:0031328 positive regulation of cellular biosynthetic process 4.05% (3/74) 3.4 0.002993 0.031188
GO:0016192 vesicle-mediated transport 5.41% (4/74) 2.72 0.00328 0.031269
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 4.05% (3/74) 3.36 0.003235 0.031508
GO:0051254 positive regulation of RNA metabolic process 4.05% (3/74) 3.44 0.002774 0.031861
GO:0006479 protein methylation 2.7% (2/74) 4.5 0.003637 0.032589
GO:0008213 protein alkylation 2.7% (2/74) 4.5 0.003637 0.032589
GO:0034067 protein localization to Golgi apparatus 1.35% (1/74) 8.4 0.002951 0.033054
GO:0031325 positive regulation of cellular metabolic process 4.05% (3/74) 3.09 0.00545 0.033909
GO:0043227 membrane-bounded organelle 16.22% (12/74) 1.2 0.005544 0.034021
GO:0046391 5-phosphoribose 1-diphosphate metabolic process 1.35% (1/74) 7.53 0.005404 0.034099
GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process 1.35% (1/74) 7.53 0.005404 0.034099
GO:0002189 ribose phosphate diphosphokinase complex 1.35% (1/74) 7.53 0.005404 0.034099
GO:0004749 ribose phosphate diphosphokinase activity 1.35% (1/74) 7.53 0.005404 0.034099
GO:0070939 Dsl1/NZR complex 1.35% (1/74) 7.43 0.005772 0.034941
GO:0016877 ligase activity, forming carbon-sulfur bonds 2.7% (2/74) 4.22 0.005266 0.035209
GO:0140534 endoplasmic reticulum protein-containing complex 2.7% (2/74) 4.23 0.005242 0.035584
GO:0008276 protein methyltransferase activity 2.7% (2/74) 4.25 0.005091 0.03564
GO:0043231 intracellular membrane-bounded organelle 16.22% (12/74) 1.21 0.005226 0.03602
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity 1.35% (1/74) 7.74 0.004669 0.036063
GO:0004181 metallocarboxypeptidase activity 1.35% (1/74) 7.74 0.004669 0.036063
GO:1990234 transferase complex 5.41% (4/74) 2.54 0.005086 0.036166
GO:0006511 ubiquitin-dependent protein catabolic process 4.05% (3/74) 3.16 0.00478 0.036296
GO:0061951 establishment of protein localization to plasma membrane 1.35% (1/74) 7.63 0.005037 0.036393
GO:0043001 Golgi to plasma membrane protein transport 1.35% (1/74) 7.63 0.005037 0.036393
GO:0008170 N-methyltransferase activity 2.7% (2/74) 4.33 0.004596 0.036768
GO:0006285 base-excision repair, AP site formation 1.35% (1/74) 7.31 0.006261 0.036908
GO:0006296 obsolete nucleotide-excision repair, DNA incision, 5'-to lesion 1.35% (1/74) 7.78 0.004546 0.037032
GO:0031510 SUMO activating enzyme complex 1.35% (1/74) 7.86 0.004301 0.037055
GO:0019948 SUMO activating enzyme activity 1.35% (1/74) 7.86 0.004301 0.037055
GO:0019941 modification-dependent protein catabolic process 4.05% (3/74) 3.02 0.006207 0.037074
GO:0051287 NAD binding 2.7% (2/74) 4.27 0.004965 0.037075
GO:0140535 intracellular protein-containing complex 5.41% (4/74) 2.59 0.004496 0.037301
GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e 1.35% (1/74) 7.26 0.006506 0.037368
GO:0043614 multi-eIF complex 1.35% (1/74) 7.26 0.006506 0.037368
GO:0043966 histone H3 acetylation 1.35% (1/74) 7.82 0.004424 0.037393
GO:0000702 oxidized base lesion DNA N-glycosylase activity 1.35% (1/74) 7.13 0.007118 0.038886
GO:0072546 EMC complex 1.35% (1/74) 7.15 0.006995 0.039174
GO:0032991 protein-containing complex 12.16% (9/74) 1.39 0.007109 0.039316
GO:0043632 modification-dependent macromolecule catabolic process 4.05% (3/74) 2.96 0.006951 0.039417
GO:1901564 organonitrogen compound metabolic process 17.57% (13/74) 1.08 0.007493 0.039493
GO:0048522 positive regulation of cellular process 4.05% (3/74) 2.91 0.007611 0.039646
GO:0005515 protein binding 16.22% (12/74) 1.11 0.00868 0.039679
GO:0000287 magnesium ion binding 2.7% (2/74) 3.86 0.008592 0.039681
GO:0002188 translation reinitiation 1.35% (1/74) 7.08 0.007362 0.039738
GO:0140096 catalytic activity, acting on a protein 13.51% (10/74) 1.26 0.008536 0.039836
GO:0042644 chloroplast nucleoid 1.35% (1/74) 6.88 0.008462 0.039904
GO:0042646 plastid nucleoid 1.35% (1/74) 6.88 0.008462 0.039904
GO:0016925 protein sumoylation 1.35% (1/74) 6.82 0.008828 0.039949
GO:1902494 catalytic complex 6.76% (5/74) 2.04 0.007491 0.039954
GO:0009893 positive regulation of metabolic process 4.05% (3/74) 2.87 0.008253 0.040186
GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m 1.35% (1/74) 6.76 0.009194 0.040383
GO:0004034 aldose 1-epimerase activity 1.35% (1/74) 6.76 0.009194 0.040383
GO:0044281 small molecule metabolic process 8.11% (6/74) 1.77 0.008407 0.040498
GO:0010604 positive regulation of macromolecule metabolic process 4.05% (3/74) 2.87 0.008239 0.040562
GO:1990072 TRAPPIII protein complex 1.35% (1/74) 6.94 0.008095 0.04075
GO:0045944 positive regulation of transcription by RNA polymerase II 2.7% (2/74) 3.89 0.008214 0.040889
GO:0051173 positive regulation of nitrogen compound metabolic process 4.05% (3/74) 2.89 0.007947 0.040924
GO:0019538 protein metabolic process 14.86% (11/74) 1.2 0.008061 0.041039
GO:0032386 regulation of intracellular transport 1.35% (1/74) 6.72 0.009438 0.041052
GO:1901575 organic substance catabolic process 6.76% (5/74) 1.97 0.00919 0.041171
GO:0140993 histone modifying activity 2.7% (2/74) 3.74 0.010035 0.04241
GO:0016570 histone modification 2.7% (2/74) 3.75 0.009847 0.042417
GO:0032787 monocarboxylic acid metabolic process 4.05% (3/74) 2.77 0.009964 0.042512
GO:0099023 vesicle tethering complex 2.7% (2/74) 3.73 0.010224 0.042807
GO:0001732 formation of cytoplasmic translation initiation complex 1.35% (1/74) 6.58 0.010414 0.043198
GO:0016407 acetyltransferase activity 2.7% (2/74) 3.66 0.011195 0.045182
GO:0072659 protein localization to plasma membrane 1.35% (1/74) 6.5 0.011023 0.045306
GO:1990778 protein localization to cell periphery 1.35% (1/74) 6.48 0.011145 0.04539
GO:0051603 proteolysis involved in protein catabolic process 4.05% (3/74) 2.68 0.011801 0.047202
GO:0060341 regulation of cellular localization 1.35% (1/74) 6.31 0.012484 0.047801
GO:0008138 protein tyrosine/serine/threonine phosphatase activity 1.35% (1/74) 6.31 0.012484 0.047801
GO:0048518 positive regulation of biological process 4.05% (3/74) 2.65 0.012388 0.048259
GO:0016778 diphosphotransferase activity 1.35% (1/74) 6.27 0.012849 0.048371
GO:0003674 molecular_function 48.65% (36/74) 0.46 0.01276 0.048443
GO:0006090 pyruvate metabolic process 2.7% (2/74) 3.58 0.012342 0.048502
GO:0008150 biological_process 40.54% (30/74) 0.54 0.012302 0.048772
GO:0031420 alkali metal ion binding 1.35% (1/74) 6.19 0.013578 0.04986
GO:0004743 pyruvate kinase activity 1.35% (1/74) 6.19 0.013578 0.04986
GO:0030955 potassium ion binding 1.35% (1/74) 6.19 0.013578 0.04986
GO:0009295 nucleoid 1.35% (1/74) 6.18 0.013699 0.049897
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (74) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms