Coexpression cluster: Cluster_1694 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009834 plant-type secondary cell wall biogenesis 5.36% (6/112) 6.76 0.0 0.0
GO:0009832 plant-type cell wall biogenesis 7.14% (8/112) 5.4 0.0 0.0
GO:0071840 cellular component organization or biogenesis 18.75% (21/112) 2.67 0.0 0.0
GO:0042546 cell wall biogenesis 7.14% (8/112) 5.16 0.0 0.0
GO:0071669 plant-type cell wall organization or biogenesis 7.14% (8/112) 5.19 0.0 0.0
GO:0007010 cytoskeleton organization 8.04% (9/112) 4.56 0.0 0.0
GO:0000226 microtubule cytoskeleton organization 7.14% (8/112) 4.78 0.0 0.0
GO:0044085 cellular component biogenesis 7.14% (8/112) 4.52 0.0 0.0
GO:0071554 cell wall organization or biogenesis 7.14% (8/112) 4.55 0.0 0.0
GO:0007017 microtubule-based process 7.14% (8/112) 4.19 0.0 1e-06
GO:0005200 structural constituent of cytoskeleton 3.57% (4/112) 6.83 0.0 2e-06
GO:0005874 microtubule 5.36% (6/112) 4.85 0.0 3e-06
GO:0099081 supramolecular polymer 5.36% (6/112) 4.72 0.0 4e-06
GO:0099512 supramolecular fiber 5.36% (6/112) 4.72 0.0 4e-06
GO:0099513 polymeric cytoskeletal fiber 5.36% (6/112) 4.72 0.0 5e-06
GO:0045492 xylan biosynthetic process 3.57% (4/112) 6.24 0.0 9e-06
GO:0005794 Golgi apparatus 6.25% (7/112) 3.89 1e-06 1.6e-05
GO:0006996 organelle organization 9.82% (11/112) 2.8 1e-06 1.7e-05
GO:0000271 polysaccharide biosynthetic process 5.36% (6/112) 4.28 1e-06 2e-05
GO:0045491 xylan metabolic process 3.57% (4/112) 5.58 2e-06 4.2e-05
GO:0099080 supramolecular complex 5.36% (6/112) 3.98 3e-06 6e-05
GO:0000278 mitotic cell cycle 3.57% (4/112) 5.42 3e-06 6.1e-05
GO:0010417 glucuronoxylan biosynthetic process 2.68% (3/112) 6.79 3e-06 6.1e-05
GO:0010413 glucuronoxylan metabolic process 2.68% (3/112) 6.79 3e-06 6.1e-05
GO:0070592 cell wall polysaccharide biosynthetic process 3.57% (4/112) 5.25 4e-06 8.3e-05
GO:0016051 carbohydrate biosynthetic process 5.36% (6/112) 3.8 5e-06 0.0001
GO:0008092 cytoskeletal protein binding 6.25% (7/112) 3.39 6e-06 0.0001
GO:0005976 polysaccharide metabolic process 5.36% (6/112) 3.7 8e-06 0.000138
GO:0016043 cellular component organization 11.61% (13/112) 2.13 9e-06 0.000145
GO:0010410 hemicellulose metabolic process 3.57% (4/112) 4.99 9e-06 0.000146
GO:0007049 cell cycle 3.57% (4/112) 4.94 1e-05 0.000159
GO:0010383 cell wall polysaccharide metabolic process 3.57% (4/112) 4.79 1.5e-05 0.000228
GO:0016491 oxidoreductase activity 11.61% (13/112) 2.05 1.6e-05 0.000234
GO:0005198 structural molecule activity 5.36% (6/112) 3.49 1.8e-05 0.000257
GO:1901576 organic substance biosynthetic process 12.5% (14/112) 1.93 1.9e-05 0.000262
GO:0044036 cell wall macromolecule metabolic process 3.57% (4/112) 4.55 2.9e-05 0.000384
GO:0009058 biosynthetic process 12.5% (14/112) 1.86 3.4e-05 0.000436
GO:0044249 cellular biosynthetic process 11.61% (13/112) 1.95 3.5e-05 0.000442
GO:0046705 CDP biosynthetic process 1.79% (2/112) 7.46 6.3e-05 0.000746
GO:0046704 CDP metabolic process 1.79% (2/112) 7.46 6.3e-05 0.000746
GO:0110165 cellular anatomical entity 33.04% (37/112) 0.9 6.4e-05 0.000749
GO:0009987 cellular process 33.93% (38/112) 0.88 6.8e-05 0.00077
GO:0009678 diphosphate hydrolysis-driven proton transmembrane transporter activity 1.79% (2/112) 7.2 9e-05 0.000995
GO:0009059 macromolecule biosynthetic process 7.14% (8/112) 2.5 9.6e-05 0.001038
GO:0046048 UDP metabolic process 1.79% (2/112) 7.01 0.000116 0.001044
GO:0009193 pyrimidine ribonucleoside diphosphate metabolic process 1.79% (2/112) 7.01 0.000116 0.001044
GO:0009188 ribonucleoside diphosphate biosynthetic process 1.79% (2/112) 7.03 0.000113 0.001059
GO:0009194 pyrimidine ribonucleoside diphosphate biosynthetic process 1.79% (2/112) 7.03 0.000113 0.001059
GO:0033862 UMP kinase activity 1.79% (2/112) 7.03 0.000113 0.001059
GO:0006225 UDP biosynthetic process 1.79% (2/112) 7.03 0.000113 0.001059
GO:0009041 UMP/dUMP kinase activity 1.79% (2/112) 7.03 0.000113 0.001059
GO:0009139 pyrimidine nucleoside diphosphate biosynthetic process 1.79% (2/112) 6.95 0.000127 0.001105
GO:0009133 nucleoside diphosphate biosynthetic process 1.79% (2/112) 6.95 0.000127 0.001105
GO:0009138 pyrimidine nucleoside diphosphate metabolic process 1.79% (2/112) 6.93 0.00013 0.001111
GO:0004127 cytidylate kinase activity 1.79% (2/112) 7.07 0.000108 0.001117
GO:0003824 catalytic activity 33.04% (37/112) 0.87 0.000108 0.00114
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen 2.68% (3/112) 4.87 0.000163 0.001365
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 2.68% (3/112) 4.64 0.000259 0.002134
GO:0003674 molecular_function 51.79% (58/112) 0.55 0.000268 0.00217
GO:0005575 cellular_component 33.93% (38/112) 0.76 0.000388 0.003085
GO:0004427 inorganic diphosphate phosphatase activity 1.79% (2/112) 6.09 0.000414 0.003235
GO:0050145 nucleoside monophosphate kinase activity 1.79% (2/112) 5.98 0.000485 0.003728
GO:0019748 secondary metabolic process 2.68% (3/112) 4.28 0.000537 0.004064
GO:0008017 microtubule binding 3.57% (4/112) 3.42 0.000573 0.004271
GO:0046658 obsolete anchored component of plasma membrane 2.68% (3/112) 4.18 0.000656 0.004744
GO:0009808 lignin metabolic process 1.79% (2/112) 5.77 0.000649 0.004763
GO:0015631 tubulin binding 3.57% (4/112) 3.33 0.00073 0.005197
GO:0032561 guanyl ribonucleotide binding 3.57% (4/112) 3.3 0.000777 0.005368
GO:0005525 GTP binding 3.57% (4/112) 3.3 0.000777 0.005368
GO:0019001 guanyl nucleotide binding 3.57% (4/112) 3.26 0.000867 0.005909
GO:0051213 dioxygenase activity 2.68% (3/112) 3.78 0.001426 0.009578
GO:0005975 carbohydrate metabolic process 6.25% (7/112) 2.06 0.001541 0.010206
GO:0009698 phenylpropanoid metabolic process 1.79% (2/112) 5.06 0.001711 0.01103
GO:0004497 monooxygenase activity 4.46% (5/112) 2.56 0.001695 0.011077
GO:0005506 iron ion binding 4.46% (5/112) 2.54 0.001805 0.011477
GO:0016407 acetyltransferase activity 2.68% (3/112) 3.64 0.001882 0.011809
GO:0019205 nucleobase-containing compound kinase activity 1.79% (2/112) 4.96 0.001959 0.011982
GO:0003779 actin binding 2.68% (3/112) 3.62 0.001953 0.012096
GO:0009218 pyrimidine ribonucleotide metabolic process 1.79% (2/112) 4.83 0.002319 0.013827
GO:0009220 pyrimidine ribonucleotide biosynthetic process 1.79% (2/112) 4.84 0.002307 0.01393
GO:0016776 phosphotransferase activity, phosphate group as acceptor 1.79% (2/112) 4.82 0.00238 0.014014
GO:0016740 transferase activity 16.07% (18/112) 1.05 0.002444 0.014215
GO:0046914 transition metal ion binding 7.14% (8/112) 1.76 0.002648 0.015034
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 4.46% (5/112) 2.42 0.002623 0.015073
GO:1901566 organonitrogen compound biosynthetic process 5.36% (6/112) 2.11 0.002864 0.016073
GO:0046906 tetrapyrrole binding 4.46% (5/112) 2.34 0.003254 0.017059
GO:0006220 pyrimidine nucleotide metabolic process 1.79% (2/112) 4.59 0.003237 0.017154
GO:0008150 biological_process 40.18% (45/112) 0.53 0.003176 0.017215
GO:0044550 secondary metabolite biosynthetic process 1.79% (2/112) 4.62 0.003111 0.017253
GO:0006221 pyrimidine nucleotide biosynthetic process 1.79% (2/112) 4.59 0.003223 0.017271
GO:0020037 heme binding 4.46% (5/112) 2.35 0.003162 0.017335
GO:0005737 cytoplasm 8.93% (10/112) 1.47 0.003439 0.017833
GO:0044042 glucan metabolic process 2.68% (3/112) 3.18 0.004601 0.023599
GO:0003979 UDP-glucose 6-dehydrogenase activity 0.89% (1/112) 7.63 0.00502 0.025475
GO:0016710 trans-cinnamate 4-monooxygenase activity 0.89% (1/112) 7.58 0.005206 0.026138
GO:0072528 pyrimidine-containing compound biosynthetic process 1.79% (2/112) 4.22 0.005317 0.026418
GO:0050793 regulation of developmental process 1.79% (2/112) 4.16 0.005771 0.02838
GO:0004765 shikimate kinase activity 0.89% (1/112) 7.39 0.005947 0.028946
GO:0072527 pyrimidine-containing compound metabolic process 1.79% (2/112) 4.1 0.006262 0.030172
GO:0010005 cortical microtubule, transverse to long axis 0.89% (1/112) 7.22 0.006688 0.031586
GO:0016413 O-acetyltransferase activity 1.79% (2/112) 4.05 0.006652 0.031731
GO:0003856 3-dehydroquinate synthase activity 0.89% (1/112) 7.14 0.007058 0.032687
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups 3.57% (4/112) 2.42 0.007029 0.032872
GO:0016020 membrane 12.5% (14/112) 1.05 0.00746 0.034214
GO:0016760 cellulose synthase (UDP-forming) activity 1.79% (2/112) 3.94 0.007696 0.03463
GO:0009833 plant-type primary cell wall biogenesis 1.79% (2/112) 3.95 0.007632 0.034673
GO:2000280 regulation of root development 0.89% (1/112) 7.0 0.007798 0.034764
GO:0016759 cellulose synthase activity 1.79% (2/112) 3.89 0.00821 0.036263
GO:1990937 xylan acetylation 0.89% (1/112) 6.83 0.008723 0.038171
GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity 0.89% (1/112) 6.8 0.008907 0.038278
GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity 0.89% (1/112) 6.8 0.008907 0.038278
GO:0051513 regulation of monopolar cell growth 0.89% (1/112) 6.69 0.009646 0.040719
GO:0051510 regulation of unidimensional cell growth 0.89% (1/112) 6.69 0.009646 0.040719
GO:0030243 cellulose metabolic process 1.79% (2/112) 3.71 0.010516 0.04362
GO:0030244 cellulose biosynthetic process 1.79% (2/112) 3.71 0.010492 0.043901
GO:0010497 plasmodesmata-mediated intercellular transport 0.89% (1/112) 6.53 0.010753 0.044218
GO:0006023 aminoglycan biosynthetic process 0.89% (1/112) 6.48 0.011122 0.044959
GO:0006024 glycosaminoglycan biosynthetic process 0.89% (1/112) 6.48 0.011122 0.044959
GO:0016757 glycosyltransferase activity 4.46% (5/112) 1.91 0.011256 0.045117
GO:1902600 proton transmembrane transport 1.79% (2/112) 3.6 0.012047 0.047888
GO:0043733 DNA-3-methylbase glycosylase activity 0.89% (1/112) 6.3 0.012596 0.049247
GO:0008725 DNA-3-methyladenine glycosylase activity 0.89% (1/112) 6.3 0.012596 0.049247
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (112) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms