Coexpression cluster: Cluster_3074 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0042646 plastid nucleoid 25.0% (1/4) 11.09 0.000459 0.007194
GO:0042644 chloroplast nucleoid 25.0% (1/4) 11.09 0.000459 0.007194
GO:0000703 oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity 25.0% (1/4) 13.61 8e-05 0.007508
GO:0005844 polysome 25.0% (1/4) 10.34 0.000772 0.00907
GO:0000702 oxidized base lesion DNA N-glycosylase activity 25.0% (1/4) 11.34 0.000386 0.009071
GO:0035145 exon-exon junction complex 25.0% (1/4) 10.16 0.000872 0.009104
GO:0009295 nucleoid 25.0% (1/4) 10.39 0.000745 0.010008
GO:0006285 base-excision repair, AP site formation 25.0% (1/4) 11.52 0.000339 0.010636
GO:0006296 obsolete nucleotide-excision repair, DNA incision, 5'-to lesion 25.0% (1/4) 11.99 0.000246 0.011574
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity 25.0% (1/4) 9.63 0.001257 0.01182
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 25.0% (1/4) 9.07 0.001862 0.014589
GO:0019104 DNA N-glycosylase activity 25.0% (1/4) 9.1 0.001823 0.015575
GO:0051539 4 iron, 4 sulfur cluster binding 25.0% (1/4) 8.74 0.002341 0.015718
GO:0006284 base-excision repair 25.0% (1/4) 8.76 0.002301 0.016639
GO:0051536 iron-sulfur cluster binding 25.0% (1/4) 7.55 0.005334 0.029496
GO:0051540 metal cluster binding 25.0% (1/4) 7.55 0.005334 0.029496
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds 25.0% (1/4) 7.7 0.00481 0.030146
GO:0000956 nuclear-transcribed mRNA catabolic process 25.0% (1/4) 7.41 0.005865 0.030626
GO:0006402 mRNA catabolic process 25.0% (1/4) 7.1 0.007282 0.036027
GO:0006401 RNA catabolic process 25.0% (1/4) 6.85 0.008619 0.040508
GO:0090304 nucleic acid metabolic process 50.0% (2/4) 3.65 0.009081 0.040649
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (4) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms